Wall clock time and date at job start Mon Mar 30 2020 07:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.76200 * 103.00099 * 2 1 4 4 C 1.38958 * 120.05404 * 0.02562 * 3 2 1 5 5 C 1.38080 * 119.94653 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.97459 * 180.02562 * 5 4 3 7 7 C 1.50702 * 115.54844 * 120.33106 * 6 5 4 8 8 H 1.07999 * 119.99824 * 144.12900 * 7 6 5 9 9 C 1.37881 * 119.99940 * 324.12099 * 7 6 5 10 10 N 1.31513 * 119.99913 * 164.33083 * 9 7 6 11 11 Si 1.86802 * 120.00033 * 344.33975 * 9 7 6 12 12 H 1.48497 * 109.47072 * 91.72380 * 11 9 7 13 13 H 1.48502 * 109.46706 * 211.72161 * 11 9 7 14 14 H 1.48494 * 109.47231 * 331.72074 * 11 9 7 15 15 C 1.53002 * 117.49745 * 334.66464 * 6 5 4 16 16 C 1.52992 * 117.50019 * 266.00526 * 6 5 4 17 17 C 1.38506 * 120.05190 * 0.02562 * 5 4 3 18 18 F 1.35099 * 119.94213 * 180.28046 * 17 5 4 19 19 C 1.38453 * 120.11257 * 359.97438 * 17 5 4 20 20 C 1.38125 * 120.05164 * 359.97438 * 19 17 5 21 21 C 1.50705 * 120.02392 * 180.02562 * 20 19 17 22 22 H 1.09004 * 109.47409 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47548 * 299.99921 * 1 2 3 24 24 H 1.08999 * 109.47004 * 60.00141 * 1 2 3 25 25 H 1.08006 * 120.02986 * 359.97438 * 4 3 2 26 26 H 0.96991 * 120.00208 * 179.97438 * 10 9 7 27 27 H 1.09000 * 117.49943 * 359.97438 * 15 6 5 28 28 H 1.09003 * 117.49761 * 145.01922 * 15 6 5 29 29 H 1.09002 * 117.49940 * 214.98149 * 16 6 5 30 30 H 1.09002 * 117.50130 * 359.97438 * 16 6 5 31 31 H 1.07994 * 119.97502 * 179.97438 * 19 17 5 32 32 H 1.09007 * 109.46380 * 90.00453 * 21 20 19 33 33 H 1.08994 * 109.47065 * 210.00220 * 21 20 19 34 34 H 1.08995 * 109.47034 * 330.00773 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1950 2.6655 0.0005 5 6 1.5081 4.0103 0.0011 6 6 0.4075 5.0397 0.0022 7 6 0.4024 5.9845 1.1763 8 1 0.1113 7.0154 1.0386 9 6 0.7694 5.5328 2.4263 10 7 1.0642 6.3934 3.3760 11 14 0.8481 3.6985 2.7706 12 1 2.2218 3.2028 2.5014 13 1 0.5007 3.4465 4.1922 14 1 -0.1155 2.9881 1.8921 15 6 -0.9467 4.6266 -0.5780 16 6 -0.0447 5.5920 -1.3510 17 6 2.8331 4.4140 0.0005 18 9 3.1369 5.7303 0.0068 19 6 3.8466 3.4707 0.0000 20 6 3.5384 2.1243 0.0005 21 6 4.6421 1.0981 0.0005 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.1616 2.3513 0.0005 26 1 1.3220 6.0757 4.2554 27 1 -1.0413 3.6105 -0.9609 28 1 -1.8412 5.0386 -0.1108 29 1 -0.3461 6.6387 -1.3921 30 1 0.4542 5.2112 -2.2422 31 1 4.8789 3.7879 -0.0008 32 1 4.9083 0.8510 1.0283 33 1 4.3020 0.1988 -0.5129 34 1 5.5140 1.5023 -0.5136 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260342160.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:10 Heat of formation + Delta-G solvation = 5.945809 kcal Electronic energy + Delta-G solvation = -18627.908518 eV Core-core repulsion = 15760.348050 eV Total energy + Delta-G solvation = -2867.560468 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.084 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -47.96463 -39.19466 -36.48654 -32.29926 -32.11734 -30.54232 -28.70994 -27.10840 -25.56788 -22.82047 -21.66051 -21.18732 -19.46249 -17.48847 -16.56623 -16.30787 -15.54243 -15.26163 -14.67556 -14.43242 -14.03024 -13.83081 -13.77026 -13.28356 -13.07727 -12.80934 -12.63553 -12.41014 -12.03797 -11.87154 -11.72431 -11.04632 -10.88595 -10.67892 -10.53770 -10.33210 -10.06593 -9.62474 -9.46875 -9.26632 -8.97057 -8.38123 -8.00811 -7.07530 -6.20629 -4.13535 1.48923 1.59148 1.69308 2.52955 3.28593 3.33945 3.39622 3.87728 4.38706 4.69100 4.80405 5.05197 5.07825 5.12383 5.16539 5.30712 5.46032 5.59004 5.64552 5.72002 5.77923 5.86163 5.98839 6.10179 6.21254 6.30927 6.38963 6.44161 6.59685 6.66618 6.77580 6.95590 7.08519 7.37624 7.64404 8.40773 8.84105 9.44030 10.89899 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018489 B = 0.009711 C = 0.009055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.011830 B = 2882.599632 C = 3091.544158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S -0.123 6.123 3 C -0.111 4.111 4 C -0.103 4.103 5 C -0.056 4.056 6 C 0.043 3.957 7 C -0.482 4.482 8 H 0.081 0.919 9 C 0.087 3.913 10 N -0.880 5.880 11 Si 0.856 3.144 12 H -0.268 1.268 13 H -0.295 1.295 14 H -0.256 1.256 15 C -0.205 4.205 16 C -0.175 4.175 17 C 0.132 3.868 18 F -0.118 7.118 19 C -0.153 4.153 20 C -0.052 4.052 21 C -0.110 4.110 22 H 0.105 0.895 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.133 0.867 26 H 0.266 0.734 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.135 0.865 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.627 -12.089 -7.449 14.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 S 0.117 5.883 3 C -0.223 4.223 4 C -0.126 4.126 5 C -0.059 4.059 6 C 0.042 3.958 7 C -0.519 4.519 8 H 0.099 0.901 9 C -0.117 4.117 10 N -0.515 5.515 11 Si 0.684 3.316 12 H -0.193 1.193 13 H -0.222 1.222 14 H -0.181 1.181 15 C -0.243 4.243 16 C -0.213 4.213 17 C 0.110 3.890 18 F -0.096 7.096 19 C -0.173 4.173 20 C -0.058 4.058 21 C -0.167 4.167 22 H 0.124 0.876 23 H 0.103 0.897 24 H 0.103 0.897 25 H 0.151 0.849 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.153 0.847 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.339 -13.048 -7.236 15.289 hybrid contribution -0.846 0.497 0.447 1.078 sum 2.493 -12.551 -6.789 14.486 Atomic orbital electron populations 1.23706 0.95415 1.06610 1.06026 1.84947 1.06057 1.03841 1.93420 1.21357 0.95860 0.96023 1.09099 1.21027 0.98664 0.91892 1.01054 1.19528 0.93766 0.93914 0.98677 1.18031 0.88587 0.94667 0.94502 1.20225 1.46282 0.96100 0.89261 0.90065 1.24906 0.93341 0.97300 0.96170 1.69940 1.43056 1.34439 1.04087 0.87258 0.80194 0.86967 0.77162 1.19316 1.22212 1.18089 1.23197 0.97199 0.97483 1.06394 1.22801 1.04933 0.98682 0.94856 1.17430 0.92544 0.78463 1.00533 1.91537 1.93504 1.31549 1.93043 1.20872 0.98994 0.91849 1.05605 1.19149 0.92496 0.93737 1.00417 1.20742 0.96115 0.97173 1.02628 0.87637 0.89730 0.89744 0.84896 0.92403 0.91405 0.89210 0.89366 0.90857 0.84731 0.90878 0.90996 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.15 101.05 0.92 -0.90 16 2 S -0.12 -1.80 20.77 -107.50 -2.23 -4.03 16 3 C -0.11 -2.01 6.10 -39.06 -0.24 -2.25 16 4 C -0.10 -2.06 5.24 -39.37 -0.21 -2.27 16 5 C -0.06 -1.25 2.66 -104.58 -0.28 -1.53 16 6 C 0.04 1.02 1.23 -156.81 -0.19 0.83 16 7 C -0.48 -13.54 8.88 -34.44 -0.31 -13.85 16 8 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 9 C 0.09 2.52 5.39 -17.82 -0.10 2.43 16 10 N -0.88 -26.83 13.96 55.43 0.77 -26.06 16 11 Si 0.86 21.80 23.41 -169.99 -3.98 17.82 16 12 H -0.27 -6.84 6.96 56.52 0.39 -6.45 16 13 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 14 H -0.26 -6.05 5.55 56.52 0.31 -5.74 16 15 C -0.20 -4.21 9.45 -26.69 -0.25 -4.46 16 16 C -0.18 -3.62 9.94 -26.70 -0.27 -3.89 16 17 C 0.13 2.91 6.62 -39.40 -0.26 2.65 16 18 F -0.12 -2.82 16.31 2.25 0.04 -2.78 16 19 C -0.15 -2.85 9.67 -39.54 -0.38 -3.23 16 20 C -0.05 -0.91 5.90 -104.41 -0.62 -1.53 16 21 C -0.11 -1.44 9.57 36.01 0.34 -1.10 16 22 H 0.11 0.99 8.14 -51.92 -0.42 0.57 16 23 H 0.08 1.13 7.75 -51.92 -0.40 0.73 16 24 H 0.08 0.98 7.75 -51.92 -0.40 0.58 16 25 H 0.13 2.51 3.90 -52.48 -0.20 2.31 16 26 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 27 H 0.07 1.24 6.82 -51.93 -0.35 0.89 16 28 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 29 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 30 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.89 6.78 -51.93 -0.35 0.54 16 34 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 LS Contribution 290.05 15.07 4.37 4.37 Total: -1.00 -30.72 290.05 -7.18 -37.90 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.33 Total: 1.88 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: -1.82 Total: -29.10 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.77 Total: -26.06 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.04 Total: -2.78 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -3.98 Total: 17.82 kcal Atomic # 16 Polarization: -1.80 SS G_CDS: -2.23 Total: -4.03 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.72 -7.18 -37.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260342160.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.849 kcal (2) G-P(sol) polarization free energy of solvation -30.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds