Wall clock time and date at job start Mon Mar 30 2020 07:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.76200 * 103.00099 * 2 1 4 4 C 1.38958 * 120.05404 * 0.02562 * 3 2 1 5 5 C 1.38080 * 119.94653 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.97459 * 180.02562 * 5 4 3 7 7 C 1.50702 * 115.54844 * 120.33106 * 6 5 4 8 8 H 1.07999 * 119.99824 * 144.12900 * 7 6 5 9 9 C 1.37881 * 119.99940 * 324.12099 * 7 6 5 10 10 N 1.31513 * 119.99913 * 164.33083 * 9 7 6 11 11 Si 1.86802 * 120.00033 * 344.33975 * 9 7 6 12 12 H 1.48497 * 109.47072 * 91.72380 * 11 9 7 13 13 H 1.48502 * 109.46706 * 211.72161 * 11 9 7 14 14 H 1.48494 * 109.47231 * 331.72074 * 11 9 7 15 15 C 1.53002 * 117.49745 * 334.66464 * 6 5 4 16 16 C 1.52992 * 117.50019 * 266.00526 * 6 5 4 17 17 C 1.38506 * 120.05190 * 0.02562 * 5 4 3 18 18 F 1.35099 * 119.94213 * 180.28046 * 17 5 4 19 19 C 1.38453 * 120.11257 * 359.97438 * 17 5 4 20 20 C 1.38125 * 120.05164 * 359.97438 * 19 17 5 21 21 C 1.50705 * 120.02392 * 180.02562 * 20 19 17 22 22 H 1.09004 * 109.47409 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47548 * 299.99921 * 1 2 3 24 24 H 1.08999 * 109.47004 * 60.00141 * 1 2 3 25 25 H 1.08006 * 120.02986 * 359.97438 * 4 3 2 26 26 H 0.96991 * 120.00208 * 179.97438 * 10 9 7 27 27 H 1.09000 * 117.49943 * 359.97438 * 15 6 5 28 28 H 1.09003 * 117.49761 * 145.01922 * 15 6 5 29 29 H 1.09002 * 117.49940 * 214.98149 * 16 6 5 30 30 H 1.09002 * 117.50130 * 359.97438 * 16 6 5 31 31 H 1.07994 * 119.97502 * 179.97438 * 19 17 5 32 32 H 1.09007 * 109.46380 * 90.00453 * 21 20 19 33 33 H 1.08994 * 109.47065 * 210.00220 * 21 20 19 34 34 H 1.08995 * 109.47034 * 330.00773 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1950 2.6655 0.0005 5 6 1.5081 4.0103 0.0011 6 6 0.4075 5.0397 0.0022 7 6 0.4024 5.9845 1.1763 8 1 0.1113 7.0154 1.0386 9 6 0.7694 5.5328 2.4263 10 7 1.0642 6.3934 3.3760 11 14 0.8481 3.6985 2.7706 12 1 2.2218 3.2028 2.5014 13 1 0.5007 3.4465 4.1922 14 1 -0.1155 2.9881 1.8921 15 6 -0.9467 4.6266 -0.5780 16 6 -0.0447 5.5920 -1.3510 17 6 2.8331 4.4140 0.0005 18 9 3.1369 5.7303 0.0068 19 6 3.8466 3.4707 0.0000 20 6 3.5384 2.1243 0.0005 21 6 4.6421 1.0981 0.0005 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.1616 2.3513 0.0005 26 1 1.3220 6.0757 4.2554 27 1 -1.0413 3.6105 -0.9609 28 1 -1.8412 5.0386 -0.1108 29 1 -0.3461 6.6387 -1.3921 30 1 0.4542 5.2112 -2.2422 31 1 4.8789 3.7879 -0.0008 32 1 4.9083 0.8510 1.0283 33 1 4.3020 0.1988 -0.5129 34 1 5.5140 1.5023 -0.5136 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260342160.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:08 Heat of formation + Delta-G solvation = -11.593133 kcal Electronic energy + Delta-G solvation = -18628.669064 eV Core-core repulsion = 15760.348050 eV Total energy + Delta-G solvation = -2868.321013 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.084 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -49.66520 -40.69696 -38.11371 -34.42798 -33.48663 -31.94118 -29.72953 -28.62786 -27.39347 -24.33034 -23.14571 -22.79975 -21.19141 -19.33581 -18.02912 -17.81237 -17.24726 -16.98523 -16.24754 -15.96788 -15.50289 -15.31379 -15.04175 -14.78642 -14.35412 -14.30620 -14.22707 -13.80932 -13.46362 -13.14137 -12.94924 -12.90408 -12.55010 -12.40213 -12.12286 -11.94387 -11.70311 -11.30672 -11.27507 -10.98046 -10.44963 -10.40523 -9.53908 -8.43154 -8.27878 -6.35330 0.00503 0.13995 0.54851 1.26646 1.28355 1.36871 1.41319 2.26627 2.42499 2.77950 3.34604 3.44720 3.67451 3.73110 3.96183 4.20161 4.21832 4.26784 4.29998 4.46295 4.54465 4.62188 4.74589 4.76670 4.77435 4.83077 4.85816 5.01827 5.14310 5.20349 5.32124 5.37192 5.46563 5.60488 5.85492 6.22437 6.61477 7.24434 8.74310 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018489 B = 0.009711 C = 0.009055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.011830 B = 2882.599632 C = 3091.544158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 S -0.099 6.099 3 C -0.119 4.119 4 C -0.113 4.113 5 C -0.075 4.075 6 C 0.010 3.990 7 C -0.483 4.483 8 H 0.036 0.964 9 C 0.035 3.965 10 N -0.933 5.933 11 Si 0.916 3.084 12 H -0.269 1.269 13 H -0.304 1.304 14 H -0.226 1.226 15 C -0.181 4.181 16 C -0.167 4.167 17 C 0.090 3.910 18 F -0.144 7.144 19 C -0.151 4.151 20 C -0.053 4.053 21 C -0.108 4.108 22 H 0.138 0.862 23 H 0.075 0.925 24 H 0.093 0.907 25 H 0.144 0.856 26 H 0.265 0.735 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.158 0.842 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.727 -16.143 -8.864 18.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.322 4.322 2 S 0.142 5.858 3 C -0.231 4.231 4 C -0.136 4.136 5 C -0.078 4.078 6 C 0.009 3.991 7 C -0.520 4.520 8 H 0.054 0.946 9 C -0.164 4.164 10 N -0.572 5.572 11 Si 0.742 3.258 12 H -0.195 1.195 13 H -0.232 1.232 14 H -0.149 1.149 15 C -0.219 4.219 16 C -0.205 4.205 17 C 0.069 3.931 18 F -0.122 7.122 19 C -0.171 4.171 20 C -0.059 4.059 21 C -0.164 4.164 22 H 0.156 0.844 23 H 0.094 0.906 24 H 0.111 0.889 25 H 0.162 0.838 26 H 0.074 0.926 27 H 0.118 0.882 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.176 0.824 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.421 -17.122 -8.688 19.503 hybrid contribution -0.876 1.737 0.790 2.099 sum 2.545 -15.386 -7.898 17.481 Atomic orbital electron populations 1.23897 0.93480 1.08809 1.06030 1.84900 1.08173 1.00062 1.92671 1.21806 0.95889 0.98297 1.07081 1.21123 0.99761 0.91113 1.01608 1.19417 0.93122 0.94559 1.00687 1.17920 0.91284 0.95828 0.94031 1.20387 1.45128 0.95145 0.91365 0.94615 1.25642 0.93323 1.01557 0.95924 1.70078 1.45826 1.36580 1.04670 0.86311 0.80692 0.82144 0.76611 1.19460 1.23233 1.14863 1.23185 0.95131 0.99022 1.04548 1.22849 1.04497 0.98667 0.94437 1.17904 0.93811 0.78097 1.03298 1.91463 1.93702 1.33404 1.93646 1.21208 0.99460 0.92058 1.04343 1.19702 0.93726 0.93982 0.98440 1.20846 0.95470 0.96404 1.03686 0.84418 0.90571 0.88855 0.83822 0.92561 0.88184 0.89597 0.90150 0.88664 0.82417 0.89950 0.89801 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.15 113.37 1.04 -1.97 16 2 S -0.10 -2.44 20.77 -56.49 -1.17 -3.61 16 3 C -0.12 -3.86 6.10 22.60 0.14 -3.72 16 4 C -0.11 -4.17 5.24 22.40 0.12 -4.05 16 5 C -0.08 -3.27 2.66 -19.84 -0.05 -3.33 16 6 C 0.01 0.49 1.23 -53.67 -0.07 0.42 16 7 C -0.48 -28.25 8.88 25.60 0.23 -28.03 16 8 H 0.04 2.32 8.06 -2.91 -0.02 2.30 16 9 C 0.03 2.08 5.39 84.66 0.46 2.53 16 10 N -0.93 -59.72 13.96 21.45 0.30 -59.42 16 11 Si 0.92 45.60 23.41 68.60 1.61 47.21 16 12 H -0.27 -13.31 6.96 99.48 0.69 -12.61 16 13 H -0.30 -15.33 7.11 99.48 0.71 -14.62 16 14 H -0.23 -9.91 5.55 99.48 0.55 -9.36 16 15 C -0.18 -7.10 9.45 30.62 0.29 -6.81 16 16 C -0.17 -6.80 9.94 30.61 0.30 -6.49 16 17 C 0.09 3.98 6.62 22.38 0.15 4.13 16 18 F -0.14 -7.12 16.31 44.97 0.73 -6.39 16 19 C -0.15 -5.35 9.67 22.29 0.22 -5.14 16 20 C -0.05 -1.66 5.90 -19.73 -0.12 -1.78 16 21 C -0.11 -2.37 9.57 71.24 0.68 -1.68 16 22 H 0.14 1.81 8.14 -2.39 -0.02 1.80 16 23 H 0.08 1.68 7.75 -2.39 -0.02 1.66 16 24 H 0.09 1.70 7.75 -2.39 -0.02 1.69 16 25 H 0.14 4.84 3.90 -2.91 -0.01 4.83 16 26 H 0.27 16.01 8.31 -92.72 -0.77 15.24 16 27 H 0.10 3.27 6.82 -2.39 -0.02 3.25 16 28 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 29 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 30 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 31 H 0.16 4.65 8.06 -2.91 -0.02 4.62 16 32 H 0.08 1.72 8.14 -2.38 -0.02 1.71 16 33 H 0.08 1.67 6.78 -2.39 -0.02 1.66 16 34 H 0.09 1.63 8.09 -2.39 -0.02 1.62 16 Total: -1.00 -70.04 290.05 5.78 -64.26 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.94 Total: 13.88 kcal Atomic # 6 Polarization: -59.30 SS G_CDS: 3.38 Total: -55.92 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 0.30 Total: -59.42 kcal Atomic # 9 Polarization: -7.12 SS G_CDS: 0.73 Total: -6.39 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.61 Total: 47.21 kcal Atomic # 16 Polarization: -2.44 SS G_CDS: -1.17 Total: -3.61 kcal Total: -70.04 5.78 -64.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260342160.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.667 kcal (2) G-P(sol) polarization free energy of solvation -70.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds