Wall clock time and date at job start Mon Mar 30 2020 06:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38291 * 119.97462 * 264.99789 * 10 9 7 12 12 C 1.38235 * 120.11810 * 180.02562 * 11 10 9 13 13 C 1.38202 * 120.07542 * 359.97438 * 12 11 10 14 14 C 1.38658 * 119.95501 * 359.97438 * 13 12 11 15 15 O 1.35931 * 120.05941 * 180.02562 * 14 13 12 16 16 C 1.42899 * 116.99767 * 0.02562 * 15 14 13 17 17 C 1.52996 * 109.47165 * 180.02562 * 16 15 14 18 18 C 1.53005 * 117.49658 * 243.62114 * 17 16 15 19 19 C 1.52996 * 59.99920 * 252.50879 * 18 17 16 20 20 C 1.38212 * 119.98039 * 84.72595 * 10 9 7 21 21 Cl 1.73597 * 120.03716 * 359.97438 * 20 10 9 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.08003 * 119.94472 * 359.97438 * 11 10 9 26 26 H 1.07999 * 119.96426 * 179.97438 * 12 11 10 27 27 H 1.07997 * 120.01615 * 180.02562 * 13 12 11 28 28 H 1.09001 * 109.47259 * 299.99913 * 16 15 14 29 29 H 1.08996 * 109.47235 * 59.99453 * 16 15 14 30 30 H 1.08997 * 115.54817 * 29.32250 * 17 16 15 31 31 H 1.09006 * 117.49941 * 359.97438 * 18 17 16 32 32 H 1.08994 * 117.49890 * 145.01732 * 18 17 16 33 33 H 1.08998 * 117.49748 * 252.51153 * 19 18 17 34 34 H 1.09000 * 117.49954 * 107.49353 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.5999 -4.2324 -1.2063 12 6 3.4976 -5.2836 -1.2143 13 6 4.0286 -5.7499 -0.0267 14 6 3.6609 -5.1622 1.1741 15 8 4.1823 -5.6189 2.3435 16 6 5.1043 -6.7075 2.2613 17 6 5.5797 -7.0804 3.6669 18 6 7.0663 -6.9003 3.9809 19 6 6.4864 -8.3051 3.8043 20 6 2.7625 -4.1034 1.1798 21 17 2.3042 -3.3604 2.6803 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 2.1860 -3.8700 -2.1358 26 1 3.7842 -5.7410 -2.1497 27 1 4.7301 -6.5710 -0.0341 28 1 4.6126 -7.5664 1.8047 29 1 5.9603 -6.4136 1.6539 30 1 4.8684 -6.8880 4.4702 31 1 7.7057 -6.5165 3.1858 32 1 7.3333 -6.5893 4.9908 33 1 6.3719 -8.9182 4.6982 34 1 6.7442 -8.8452 2.8934 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260351287.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:00 Heat of formation + Delta-G solvation = -6.489681 kcal Electronic energy + Delta-G solvation = -17283.387452 eV Core-core repulsion = 14400.871246 eV Total energy + Delta-G solvation = -2882.516207 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.88489 -37.96882 -36.63767 -35.49507 -33.29517 -31.11390 -29.87171 -27.45364 -26.93197 -23.41683 -22.65041 -22.01465 -21.15151 -20.19148 -17.44994 -16.48205 -16.27949 -15.74594 -15.71647 -15.05175 -14.56546 -14.23472 -13.81713 -13.20517 -13.01816 -12.60760 -12.16697 -11.81243 -11.53528 -11.50792 -11.26352 -11.14199 -10.88460 -10.74225 -10.68838 -10.56320 -10.49746 -10.11916 -9.99971 -9.51280 -9.36977 -8.37639 -7.92567 -7.69235 -6.00367 -4.02550 1.74966 1.88853 3.00725 3.17759 3.32885 3.40474 3.45811 3.62184 4.19151 4.50365 4.52349 4.62916 4.77185 5.03376 5.11080 5.25167 5.34777 5.35567 5.39336 5.40569 5.62680 5.70924 5.81851 5.83787 5.96047 6.08289 6.39977 6.56354 6.78754 6.95368 7.24047 7.53588 7.65574 7.75168 7.95012 8.31953 9.00465 9.60118 11.10171 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026259 B = 0.004902 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.057416 B = 5710.956899 C = 6128.385273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.501 4.501 8 H 0.057 0.943 9 C 0.045 3.955 10 C 0.008 3.992 11 C -0.150 4.150 12 C -0.082 4.082 13 C -0.228 4.228 14 C 0.131 3.869 15 O -0.304 6.304 16 C 0.092 3.908 17 C -0.153 4.153 18 C -0.176 4.176 19 C -0.172 4.172 20 C -0.068 4.068 21 Cl -0.055 7.055 22 H 0.261 0.739 23 H 0.043 0.957 24 H 0.033 0.967 25 H 0.128 0.872 26 H 0.120 0.880 27 H 0.123 0.877 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.117 0.883 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.449 -15.130 3.425 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.539 4.539 8 H 0.075 0.925 9 C 0.008 3.992 10 C 0.007 3.993 11 C -0.169 4.169 12 C -0.100 4.100 13 C -0.247 4.247 14 C 0.085 3.915 15 O -0.218 6.218 16 C 0.017 3.983 17 C -0.172 4.172 18 C -0.213 4.213 19 C -0.209 4.209 20 C -0.095 4.095 21 Cl -0.026 7.026 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.051 0.949 25 H 0.146 0.854 26 H 0.138 0.862 27 H 0.141 0.859 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.135 0.865 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.229 -14.881 3.766 18.446 hybrid contribution 0.576 0.853 -0.064 1.031 sum 10.805 -14.029 3.702 18.090 Atomic orbital electron populations 1.69964 1.05962 1.26614 1.50711 1.24941 0.94833 0.99061 0.95232 0.86513 0.80219 0.83648 0.77564 1.19667 1.21014 1.20953 1.20935 0.92906 0.89398 1.50706 0.92495 1.18481 0.92444 0.89033 0.99235 1.20535 0.94667 0.94465 0.89584 1.21001 1.00396 0.97520 0.97960 1.20904 0.96038 0.96160 0.96945 1.20886 1.07100 1.04851 0.91895 1.18632 0.94111 0.93725 0.85043 1.86112 1.58030 1.49195 1.28414 1.22221 0.91830 0.88534 0.95744 1.22103 0.94156 1.02949 0.97952 1.23090 0.95619 0.99310 1.03283 1.22975 1.03421 0.90970 1.03523 1.20080 1.02684 0.97582 0.89146 1.98328 1.91322 1.81780 1.31136 0.92952 0.93908 0.94921 0.85391 0.86174 0.85900 0.91812 0.92084 0.86490 0.88554 0.88457 0.88298 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.50 -14.00 9.09 -34.44 -0.31 -14.32 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.04 1.15 4.61 -29.03 -0.13 1.02 16 10 C 0.01 0.18 5.07 -104.61 -0.53 -0.35 16 11 C -0.15 -2.84 9.68 -39.56 -0.38 -3.22 16 12 C -0.08 -1.29 10.04 -39.60 -0.40 -1.69 16 13 C -0.23 -3.56 9.04 -39.44 -0.36 -3.92 16 14 C 0.13 2.37 6.68 -39.20 -0.26 2.11 16 15 O -0.30 -5.03 9.60 -19.52 -0.19 -5.21 16 16 C 0.09 1.10 5.02 37.16 0.19 1.29 16 17 C -0.15 -1.59 6.06 -90.62 -0.55 -2.14 16 18 C -0.18 -1.55 10.18 -26.73 -0.27 -1.82 16 19 C -0.17 -1.34 10.25 -26.73 -0.27 -1.61 16 20 C -0.07 -1.43 6.33 -39.36 -0.25 -1.68 16 21 Cl -0.05 -1.18 26.95 -51.86 -1.40 -2.58 16 22 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 23 H 0.04 1.17 7.13 -51.93 -0.37 0.80 16 24 H 0.03 0.87 8.05 -51.93 -0.42 0.45 16 25 H 0.13 2.27 8.06 -52.48 -0.42 1.85 16 26 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 27 H 0.12 1.52 6.30 -52.49 -0.33 1.19 16 28 H 0.06 0.68 7.66 -51.93 -0.40 0.29 16 29 H 0.06 0.68 7.40 -51.93 -0.38 0.29 16 30 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.10 0.82 8.03 -51.93 -0.42 0.40 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 307.50 15.07 4.63 4.63 Total: -1.00 -30.36 307.50 -9.26 -39.62 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -4.40 Total: -2.91 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: -3.63 Total: -24.71 kcal Atomic # 7 Polarization: -26.38 SS G_CDS: 0.74 Total: -25.64 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.19 Total: -5.21 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -1.40 Total: -2.58 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.36 -9.26 -39.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260351287.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.135 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds