Wall clock time and date at job start Mon Mar 30 2020 07:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35932 * 116.99892 * 2 1 4 4 C 1.38851 * 120.05850 * 85.99167 * 3 2 1 5 5 Cl 1.73600 * 120.03754 * 359.97438 * 4 3 2 6 6 C 1.38217 * 119.92499 * 179.70127 * 4 3 2 7 7 C 1.50700 * 119.98126 * 180.27570 * 6 4 3 8 8 C 1.38289 * 120.03918 * 0.25777 * 6 4 3 9 9 C 1.38239 * 120.11830 * 0.03993 * 8 6 4 10 10 C 1.38194 * 120.07835 * 359.95749 * 9 8 6 11 11 C 1.50697 * 120.01796 * 180.02562 * 10 9 8 12 12 C 1.50706 * 115.54862 * 117.22583 * 11 10 9 13 13 H 1.07999 * 119.99785 * 145.95351 * 12 11 10 14 14 C 1.37880 * 119.99541 * 325.95349 * 12 11 10 15 15 N 1.31507 * 120.00345 * 0.68984 * 14 12 11 16 16 Si 1.86804 * 119.99686 * 180.68328 * 14 12 11 17 17 H 1.48506 * 109.46856 * 55.00427 * 16 14 12 18 18 H 1.48494 * 109.46993 * 175.00408 * 16 14 12 19 19 H 1.48501 * 109.46983 * 295.00461 * 16 14 12 20 20 C 1.53001 * 117.50248 * 331.55145 * 11 10 9 21 21 C 1.53004 * 117.49966 * 262.89147 * 11 10 9 22 22 H 1.09003 * 109.46558 * 185.26844 * 1 2 3 23 23 H 1.08998 * 109.46896 * 305.27122 * 1 2 3 24 24 H 1.09001 * 109.47028 * 65.27290 * 1 2 3 25 25 H 1.08999 * 109.46683 * 90.00131 * 7 6 4 26 26 H 1.09001 * 109.46846 * 210.00232 * 7 6 4 27 27 H 1.09003 * 109.46743 * 330.00070 * 7 6 4 28 28 H 1.08000 * 119.94070 * 180.02562 * 8 6 4 29 29 H 1.08001 * 119.95909 * 179.97438 * 9 8 6 30 30 H 0.97001 * 120.00162 * 185.00718 * 15 14 12 31 31 H 1.09000 * 117.49913 * 0.02562 * 20 11 10 32 32 H 1.08999 * 117.49339 * 145.02116 * 20 11 10 33 33 H 1.09003 * 117.49492 * 214.98522 * 21 11 10 34 34 H 1.08998 * 117.49705 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 2.2870 1.8690 1.1988 5 17 1.7998 1.1459 2.7000 6 6 2.9202 3.0976 1.1961 7 6 3.1879 3.8098 2.4969 8 6 3.3087 3.6735 0.0003 9 6 3.0642 3.0229 -1.1947 10 6 2.4315 1.7943 -1.1976 11 6 2.1661 1.0861 -2.5010 12 6 2.8584 -0.2416 -2.6719 13 1 2.3737 -1.0369 -3.2187 14 6 4.1105 -0.4410 -2.1301 15 7 4.6949 0.5228 -1.4526 16 14 4.9767 -2.0803 -2.3582 17 1 5.0592 -2.3992 -3.8063 18 1 6.3463 -1.9996 -1.7902 19 1 4.2130 -3.1451 -1.6595 20 6 1.9779 1.9505 -3.7493 21 6 0.7756 1.2425 -3.1198 22 1 -0.3632 -1.0234 0.0944 23 1 -0.3633 0.5934 0.8390 24 1 -0.3633 0.4299 -0.9334 25 1 4.1638 3.5119 2.8800 26 1 3.1761 4.8870 2.3304 27 1 2.4171 3.5456 3.2210 28 1 3.8037 4.6334 0.0000 29 1 3.3683 3.4752 -2.1271 30 1 5.6040 0.4093 -1.1337 31 1 2.0464 3.0316 -3.6279 32 1 2.3545 1.5587 -4.6941 33 1 0.3617 0.3853 -3.6507 34 1 0.0525 1.8574 -2.5838 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260362610.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:41 Heat of formation + Delta-G solvation = -8.084824 kcal Electronic energy + Delta-G solvation = -18806.151827 eV Core-core repulsion = 15923.566449 eV Total energy + Delta-G solvation = -2882.585377 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.95547 -38.19185 -38.03363 -36.96757 -34.07719 -32.79033 -30.82027 -28.07846 -27.56334 -27.17983 -23.72579 -22.85383 -22.37933 -20.91577 -18.80061 -17.91218 -17.03771 -16.61795 -16.46830 -16.14734 -15.45544 -15.07307 -14.74504 -14.65994 -14.52719 -13.63691 -13.36588 -13.02897 -12.95954 -12.89958 -12.81716 -12.63888 -12.35287 -12.26955 -11.98678 -11.89277 -11.74235 -11.40352 -10.92227 -10.65482 -10.54650 -10.17916 -9.24978 -9.02131 -7.88719 -6.06072 0.48128 0.67571 1.34827 1.41267 1.44917 1.49009 2.46289 2.84912 3.09427 3.18321 3.70694 3.99984 4.20921 4.35906 4.48489 4.50086 4.53467 4.61805 4.70059 4.76682 4.81552 4.87759 4.92109 5.01890 5.05930 5.11920 5.20900 5.42086 5.54299 5.60113 5.72979 5.82039 5.98930 6.11413 6.43104 6.84002 6.97032 7.52679 9.01148 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.017630 B = 0.009109 C = 0.008618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.800695 B = 3073.018973 C = 3248.405467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.333 6.333 3 C 0.105 3.895 4 C -0.077 4.077 5 Cl -0.076 7.076 6 C -0.102 4.102 7 C -0.102 4.102 8 C -0.118 4.118 9 C -0.097 4.097 10 C 0.022 3.978 11 C 0.059 3.941 12 C -0.490 4.490 13 H 0.048 0.952 14 C 0.038 3.962 15 N -0.883 5.883 16 Si 0.938 3.062 17 H -0.272 1.272 18 H -0.287 1.287 19 H -0.282 1.282 20 C -0.200 4.200 21 C -0.185 4.185 22 H 0.100 0.900 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.149 0.851 29 H 0.118 0.882 30 H 0.255 0.745 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.414 6.491 5.341 9.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.250 6.250 3 C 0.060 3.940 4 C -0.104 4.104 5 Cl -0.047 7.047 6 C -0.103 4.103 7 C -0.159 4.159 8 C -0.136 4.136 9 C -0.116 4.116 10 C 0.020 3.980 11 C 0.058 3.942 12 C -0.528 4.528 13 H 0.066 0.934 14 C -0.164 4.164 15 N -0.520 5.520 16 Si 0.766 3.234 17 H -0.197 1.197 18 H -0.213 1.213 19 H -0.208 1.208 20 C -0.238 4.238 21 C -0.222 4.222 22 H 0.118 0.882 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.089 0.911 26 H 0.107 0.893 27 H 0.087 0.913 28 H 0.167 0.833 29 H 0.136 0.864 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.221 6.255 5.641 9.910 hybrid contribution 0.544 -1.154 -0.246 1.299 sum -4.677 5.101 5.395 8.776 Atomic orbital electron populations 1.23027 0.79208 1.03459 1.00239 1.86090 1.19968 1.24790 1.94125 1.18218 0.99022 0.86129 0.90621 1.21304 1.07098 0.96115 0.85852 1.98264 1.90605 1.83549 1.32269 1.19748 0.99794 0.93202 0.97578 1.20753 1.02237 1.00518 0.92377 1.21048 1.00884 1.01036 0.90662 1.20905 0.97435 0.94841 0.98371 1.19301 0.93831 0.91767 0.93070 1.17702 0.94426 0.94541 0.87502 1.20520 1.01614 0.96685 1.33955 0.93428 1.25412 0.98275 0.98721 0.93959 1.70010 1.12801 1.33159 1.35990 0.85924 0.77613 0.81729 0.78177 1.19711 1.21313 1.20774 1.23107 1.03681 0.97626 0.99337 1.22907 0.91406 1.02376 1.05528 0.88167 0.93690 0.93719 0.91129 0.89260 0.91290 0.83301 0.86445 0.93491 0.89645 0.90609 0.90134 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.23 11.10 113.37 1.26 2.49 16 2 O -0.33 -15.29 8.85 -92.79 -0.82 -16.11 16 3 C 0.10 4.75 5.48 22.52 0.12 4.87 16 4 C -0.08 -3.10 6.33 22.41 0.14 -2.96 16 5 Cl -0.08 -2.67 26.62 -2.72 -0.07 -2.74 16 6 C -0.10 -3.63 5.88 -19.86 -0.12 -3.75 16 7 C -0.10 -2.71 9.61 71.24 0.68 -2.03 16 8 C -0.12 -4.20 9.70 22.28 0.22 -3.98 16 9 C -0.10 -4.04 8.78 22.26 0.20 -3.84 16 10 C 0.02 1.00 3.02 -19.77 -0.06 0.94 16 11 C 0.06 2.79 1.72 -53.67 -0.09 2.70 16 12 C -0.49 -26.42 8.46 25.60 0.22 -26.21 16 13 H 0.05 2.60 7.81 -2.91 -0.02 2.57 16 14 C 0.04 2.08 5.37 84.66 0.45 2.53 16 15 N -0.88 -48.88 10.89 21.45 0.23 -48.65 16 16 Si 0.94 44.38 29.54 68.60 2.03 46.41 16 17 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 18 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 19 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 20 C -0.20 -8.38 9.44 30.62 0.29 -8.09 16 21 C -0.19 -7.51 8.79 30.62 0.27 -7.24 16 22 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 23 H 0.04 1.44 7.95 -2.39 -0.02 1.42 16 24 H 0.04 1.55 6.53 -2.39 -0.02 1.53 16 25 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.09 1.86 8.09 -2.39 -0.02 1.84 16 27 H 0.07 1.76 6.90 -2.39 -0.02 1.74 16 28 H 0.15 4.15 8.06 -2.91 -0.02 4.13 16 29 H 0.12 4.70 6.86 -2.91 -0.02 4.68 16 30 H 0.26 13.95 8.32 -92.71 -0.77 13.17 16 31 H 0.09 3.24 6.98 -2.39 -0.02 3.23 16 32 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 33 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.08 3.06 7.78 -2.39 -0.02 3.04 16 Total: -1.00 -60.33 298.73 6.05 -54.28 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 1.10 Total: 11.36 kcal Atomic # 6 Polarization: -48.13 SS G_CDS: 3.58 Total: -44.55 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 0.23 Total: -48.65 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.82 Total: -16.11 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 17 Polarization: -2.67 SS G_CDS: -0.07 Total: -2.74 kcal Total: -60.33 6.05 -54.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260362610.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.196 kcal (2) G-P(sol) polarization free energy of solvation -60.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds