Wall clock time and date at job start Mon Mar 30 2020 07:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35931 * 116.99616 * 2 1 4 4 C 1.38861 * 120.05979 * 85.63983 * 3 2 1 5 5 Cl 1.73593 * 120.03977 * 359.97438 * 4 3 2 6 6 C 1.38219 * 119.91902 * 180.02562 * 4 3 2 7 7 C 1.38284 * 120.04369 * 359.97438 * 6 4 3 8 8 C 1.50694 * 119.93988 * 180.02562 * 7 6 4 9 9 C 1.38240 * 120.12344 * 0.04396 * 7 6 4 10 10 C 1.38204 * 120.06997 * 359.67950 * 9 7 6 11 11 C 1.50704 * 120.01519 * 180.29810 * 10 9 7 12 12 C 1.50703 * 115.54470 * 145.08822 * 11 10 9 13 13 H 1.08001 * 119.99993 * 144.24120 * 12 11 10 14 14 C 1.37873 * 120.00090 * 324.23620 * 12 11 10 15 15 N 1.31520 * 119.99886 * 164.11677 * 14 12 11 16 16 Si 1.86801 * 120.00258 * 344.12120 * 14 12 11 17 17 H 1.48500 * 109.47365 * 95.45643 * 16 14 12 18 18 H 1.48498 * 109.47499 * 215.46268 * 16 14 12 19 19 H 1.48503 * 109.46663 * 335.45960 * 16 14 12 20 20 C 1.52996 * 117.50309 * 359.37736 * 11 10 9 21 21 C 1.52999 * 117.49714 * 290.74976 * 11 10 9 22 22 H 1.08996 * 109.47180 * 54.96550 * 1 2 3 23 23 H 1.08998 * 109.47413 * 294.95844 * 1 2 3 24 24 H 1.09004 * 109.47026 * 174.96073 * 1 2 3 25 25 H 1.07992 * 119.97331 * 179.97438 * 6 4 3 26 26 H 1.08995 * 109.47503 * 90.00049 * 8 7 6 27 27 H 1.09005 * 109.47472 * 210.00194 * 8 7 6 28 28 H 1.08998 * 109.47362 * 329.99704 * 8 7 6 29 29 H 1.07993 * 119.96418 * 179.97438 * 9 7 6 30 30 H 0.96999 * 119.99551 * 185.01954 * 15 14 12 31 31 H 1.08997 * 117.49905 * 359.97438 * 20 11 10 32 32 H 1.08996 * 117.50149 * 145.02149 * 20 11 10 33 33 H 1.09001 * 117.49325 * 214.98010 * 21 11 10 34 34 H 1.08993 * 117.49843 * 0.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2112 0.0000 4 6 2.2803 1.8724 1.1984 5 17 1.7850 1.1536 2.6988 6 6 2.9075 3.1041 1.1949 7 6 3.3016 3.6770 -0.0003 8 6 3.9858 5.0198 -0.0013 9 6 3.0689 3.0205 -1.1944 10 6 2.4473 1.7861 -1.1963 11 6 2.2003 1.0684 -2.4982 12 6 2.3131 -0.4334 -2.4439 13 1 1.6565 -1.0462 -3.0437 14 6 3.2545 -1.0250 -1.6287 15 7 3.1597 -2.3035 -1.3350 16 14 4.6645 -0.0108 -0.9412 17 1 4.3143 0.4642 0.4215 18 1 5.8895 -0.8474 -0.8742 19 1 4.9106 1.1573 -1.8245 20 6 2.6477 1.7649 -3.7849 21 6 1.1587 1.6649 -3.4470 22 1 -0.3633 0.5899 -0.8414 23 1 -0.3634 0.4336 0.9317 24 1 -0.3633 -1.0237 -0.0903 25 1 3.0898 3.6194 2.1264 26 1 5.0637 4.8784 0.0766 27 1 3.7542 5.5449 -0.9280 28 1 3.6342 5.6073 0.8467 29 1 3.3774 3.4705 -2.1264 30 1 3.7787 -2.7033 -0.7042 31 1 3.1203 2.7425 -3.6898 32 1 3.0238 1.1370 -4.5925 33 1 0.5554 0.9709 -4.0324 34 1 0.6525 2.5765 -3.1298 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260362917.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:46 Heat of formation + Delta-G solvation = 2.894070 kcal Electronic energy + Delta-G solvation = -19064.728501 eV Core-core repulsion = 16182.619204 eV Total energy + Delta-G solvation = -2882.109297 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.39888 -38.40968 -38.10765 -37.24407 -34.17085 -32.82288 -31.41016 -28.56967 -27.90007 -26.44814 -24.22785 -23.23108 -22.31453 -20.72470 -19.04432 -18.25078 -17.33922 -16.89812 -16.31108 -16.10095 -15.73965 -15.12321 -14.91855 -14.64051 -14.55688 -14.17961 -13.60303 -13.30593 -13.16031 -13.04717 -12.82328 -12.64160 -12.38818 -12.28420 -11.97743 -11.87738 -11.70938 -11.46538 -11.10866 -10.95468 -10.64718 -10.21521 -9.47318 -9.15464 -8.16747 -6.06696 0.11513 0.21373 1.13320 1.34688 1.41296 1.46926 2.42293 2.47881 2.96307 3.18431 3.61349 3.75888 3.93387 4.20377 4.25241 4.34249 4.36433 4.48992 4.57912 4.64285 4.68869 4.80050 4.86640 4.88426 4.89418 5.05792 5.09573 5.17546 5.25781 5.49103 5.53474 5.57582 5.81093 5.85887 6.40966 6.79347 6.87087 7.52209 8.96697 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.015722 B = 0.012538 C = 0.009896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.501464 B = 2232.726136 C = 2828.621040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.309 6.309 3 C 0.102 3.898 4 C -0.077 4.077 5 Cl -0.069 7.069 6 C -0.114 4.114 7 C -0.087 4.087 8 C -0.105 4.105 9 C -0.120 4.120 10 C -0.064 4.064 11 C 0.019 3.981 12 C -0.470 4.470 13 H 0.034 0.966 14 C 0.075 3.925 15 N -0.926 5.926 16 Si 0.895 3.105 17 H -0.263 1.263 18 H -0.316 1.316 19 H -0.240 1.240 20 C -0.194 4.194 21 C -0.163 4.163 22 H 0.041 0.959 23 H 0.047 0.953 24 H 0.083 0.917 25 H 0.158 0.842 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.148 0.852 30 H 0.258 0.742 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.424 15.604 4.482 16.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.224 6.224 3 C 0.057 3.943 4 C -0.104 4.104 5 Cl -0.040 7.040 6 C -0.133 4.133 7 C -0.088 4.088 8 C -0.161 4.161 9 C -0.137 4.137 10 C -0.065 4.065 11 C 0.018 3.982 12 C -0.507 4.507 13 H 0.053 0.947 14 C -0.126 4.126 15 N -0.565 5.565 16 Si 0.723 3.277 17 H -0.189 1.189 18 H -0.245 1.245 19 H -0.163 1.163 20 C -0.231 4.231 21 C -0.200 4.200 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.102 0.898 25 H 0.176 0.824 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.166 0.834 30 H 0.067 0.933 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.295 15.195 4.659 15.946 hybrid contribution 0.374 -0.636 0.493 0.887 sum -0.921 14.559 5.152 15.471 Atomic orbital electron populations 1.22765 0.79350 1.02742 0.99574 1.86406 1.19585 1.22715 1.93737 1.18455 0.98254 0.86933 0.90700 1.21652 1.05791 0.96463 0.86534 1.98309 1.90257 1.84029 1.31423 1.21076 0.99125 0.93043 1.00049 1.20218 0.98682 0.98671 0.91192 1.20824 1.00106 0.90586 1.04571 1.21332 0.98985 0.93798 0.99626 1.19885 0.98399 0.94132 0.94069 1.17941 1.02361 0.92517 0.85407 1.20049 1.16829 0.88123 1.25651 0.94731 1.25133 0.98313 0.94514 0.94601 1.69982 1.38229 1.13862 1.34387 0.86627 0.79774 0.80319 0.81025 1.18857 1.24481 1.16281 1.23265 0.97010 1.01742 1.01082 1.22854 0.91713 1.01817 1.03608 0.93997 0.93462 0.89817 0.82422 0.90248 0.89802 0.89426 0.83448 0.93312 0.88046 0.90199 0.90269 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.97 11.08 113.37 1.26 3.23 16 2 O -0.31 -14.77 6.33 -92.77 -0.59 -15.36 16 3 C 0.10 4.41 2.98 22.52 0.07 4.47 16 4 C -0.08 -2.92 5.59 22.41 0.13 -2.80 16 5 Cl -0.07 -2.41 28.11 -2.72 -0.08 -2.49 16 6 C -0.11 -3.51 9.48 22.28 0.21 -3.30 16 7 C -0.09 -2.49 5.88 -19.85 -0.12 -2.61 16 8 C -0.10 -1.91 10.01 71.23 0.71 -1.20 16 9 C -0.12 -4.05 8.08 22.26 0.18 -3.87 16 10 C -0.06 -2.67 2.78 -19.77 -0.05 -2.72 16 11 C 0.02 0.84 1.60 -53.67 -0.09 0.75 16 12 C -0.47 -26.25 8.14 25.60 0.21 -26.04 16 13 H 0.03 2.15 8.06 -2.91 -0.02 2.13 16 14 C 0.07 4.36 3.80 84.65 0.32 4.69 16 15 N -0.93 -58.21 13.95 21.45 0.30 -57.91 16 16 Si 0.89 46.09 23.74 68.60 1.63 47.72 16 17 H -0.26 -13.42 5.60 99.48 0.56 -12.87 16 18 H -0.32 -16.85 7.11 99.48 0.71 -16.14 16 19 H -0.24 -11.35 6.49 99.48 0.65 -10.71 16 20 C -0.19 -7.38 9.57 30.60 0.29 -7.09 16 21 C -0.16 -6.14 9.94 30.60 0.30 -5.83 16 22 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.05 1.62 7.80 -2.39 -0.02 1.60 16 24 H 0.08 3.27 8.14 -2.38 -0.02 3.25 16 25 H 0.16 3.77 8.06 -2.91 -0.02 3.74 16 26 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.08 1.29 8.08 -2.38 -0.02 1.27 16 28 H 0.09 1.24 8.08 -2.39 -0.02 1.22 16 29 H 0.15 4.31 5.93 -2.91 -0.02 4.29 16 30 H 0.26 15.69 8.32 -92.71 -0.77 14.92 16 31 H 0.10 3.23 6.08 -2.39 -0.01 3.21 16 32 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 33 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 34 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -67.76 289.50 5.57 -62.19 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 0.89 Total: 8.16 kcal Atomic # 6 Polarization: -45.73 SS G_CDS: 3.42 Total: -42.31 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 0.30 Total: -57.91 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.59 Total: -15.36 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.63 Total: 47.72 kcal Atomic # 17 Polarization: -2.41 SS G_CDS: -0.08 Total: -2.49 kcal Total: -67.76 5.57 -62.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260362917.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.085 kcal (2) G-P(sol) polarization free energy of solvation -67.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds