Wall clock time and date at job start Mon Mar 30 2020 07:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.66295 * 2 1 4 4 C 1.54700 * 110.75268 * 236.77936 * 2 1 3 5 5 C 1.51642 * 101.94618 * 216.44888 * 4 2 1 6 6 C 1.37747 * 132.15164 * 195.61204 * 5 4 2 7 7 C 1.38445 * 119.96610 * 179.10438 * 6 5 4 8 8 Cl 1.73601 * 120.12776 * 179.97438 * 7 6 5 9 9 C 1.38384 * 119.74171 * 359.72977 * 7 6 5 10 10 C 1.37935 * 120.33697 * 0.72999 * 9 7 6 11 11 C 1.50694 * 119.87449 * 179.72714 * 10 9 7 12 12 C 1.53001 * 109.47168 * 264.72643 * 11 10 9 13 13 C 1.50694 * 109.47168 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00563 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.38877 * 107.04843 * 15.14411 * 5 4 2 22 22 O 1.36157 * 111.21529 * 1.42956 * 21 5 4 23 23 H 1.08999 * 109.47107 * 183.21828 * 1 2 3 24 24 H 1.08998 * 109.47518 * 303.21927 * 1 2 3 25 25 H 1.09002 * 109.46935 * 63.21780 * 1 2 3 26 26 H 1.08999 * 110.93718 * 98.27961 * 4 2 1 27 27 H 1.09007 * 110.93728 * 334.60916 * 4 2 1 28 28 H 1.07999 * 120.01668 * 359.12459 * 6 5 4 29 29 H 1.08002 * 119.83817 * 180.48005 * 9 7 6 30 30 H 1.09002 * 109.47054 * 144.72896 * 11 10 9 31 31 H 1.08998 * 109.47224 * 24.72384 * 11 10 9 32 32 H 1.09007 * 109.46922 * 59.99702 * 12 11 10 33 33 H 1.09003 * 109.46836 * 300.00457 * 12 11 10 34 34 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 6 2.0782 -0.7926 -1.2102 5 6 3.3054 -1.4591 -0.6191 6 6 4.3940 -2.0723 -1.1991 7 6 5.4007 -2.5914 -0.4030 8 17 6.7741 -3.3657 -1.1294 9 6 5.3102 -2.4862 0.9739 10 6 4.2161 -1.8807 1.5560 11 6 4.1254 -1.7772 3.0566 12 6 3.3019 -2.9468 3.5996 13 6 3.2117 -2.8437 5.1003 14 1 3.6932 -2.0256 5.6154 15 6 2.5145 -3.7939 5.8160 16 7 1.9277 -4.7899 5.1889 17 14 2.4033 -3.6664 7.6763 18 1 3.5405 -4.3969 8.2914 19 1 2.4569 -2.2380 8.0787 20 1 1.1241 -4.2631 8.1377 21 6 3.1974 -1.3595 0.7619 22 8 2.0394 -0.7406 1.1222 23 1 -0.3633 -1.0260 0.0577 24 1 -0.3634 0.5630 0.8597 25 1 -0.3633 0.4631 -0.9174 26 1 2.3533 -0.1209 -2.0234 27 1 1.3561 -1.5359 -1.5484 28 1 4.4623 -2.1478 -2.2743 29 1 6.0984 -2.8837 1.5961 30 1 3.6443 -0.8374 3.3276 31 1 5.1275 -1.8091 3.4842 32 1 3.7829 -3.8867 3.3286 33 1 2.2998 -2.9150 3.1719 34 1 1.4375 -5.4585 5.6924 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260365693.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:36 Heat of formation + Delta-G solvation = -35.850299 kcal Electronic energy + Delta-G solvation = -17592.122589 eV Core-core repulsion = 14708.333210 eV Total energy + Delta-G solvation = -2883.789379 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.04233 -37.77392 -36.15354 -34.30321 -32.86458 -31.71055 -30.56429 -28.68896 -26.57088 -25.02509 -22.24443 -21.63692 -21.61197 -19.89434 -17.37965 -16.73622 -16.33306 -15.84107 -15.31542 -14.44802 -14.20340 -13.55553 -13.42876 -13.03765 -12.86116 -12.80039 -12.66876 -12.35519 -12.12101 -11.88776 -11.61317 -11.29143 -11.20314 -11.01552 -10.87950 -10.68544 -10.38679 -10.28367 -9.81006 -9.59931 -9.07012 -8.44515 -8.30833 -7.72993 -5.95667 -3.98341 1.36889 1.47017 2.28887 3.34640 3.40113 3.40754 3.44242 3.76824 4.41881 4.49207 4.54306 4.86402 4.97078 5.13888 5.25342 5.39155 5.40009 5.44797 5.59221 5.62200 5.75228 5.86995 5.99881 6.08467 6.18218 6.34916 6.44722 6.58950 6.69130 6.87156 7.05431 7.40124 7.72049 7.86591 8.04317 8.44511 9.08248 9.65079 11.15526 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.015406 B = 0.005880 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.010463 B = 4760.674358 C = 6224.209785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.073 3.927 3 H 0.084 0.916 4 C -0.101 4.101 5 C -0.170 4.170 6 C -0.078 4.078 7 C -0.061 4.061 8 Cl -0.079 7.079 9 C -0.078 4.078 10 C -0.063 4.063 11 C -0.074 4.074 12 C 0.031 3.969 13 C -0.520 4.520 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.274 1.274 20 H -0.287 1.287 21 C 0.118 3.882 22 O -0.285 6.285 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.128 0.872 29 H 0.140 0.860 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.016 0.984 33 H 0.020 0.980 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.285 8.490 -15.204 17.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.017 3.983 3 H 0.102 0.898 4 C -0.138 4.138 5 C -0.172 4.172 6 C -0.097 4.097 7 C -0.088 4.088 8 Cl -0.051 7.051 9 C -0.096 4.096 10 C -0.064 4.064 11 C -0.112 4.112 12 C -0.006 4.006 13 C -0.558 4.558 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.199 1.199 20 H -0.213 1.213 21 C 0.072 3.928 22 O -0.198 6.198 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.146 0.854 29 H 0.158 0.842 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.035 0.965 33 H 0.038 0.962 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.158 8.278 -15.026 17.290 hybrid contribution 0.014 -0.175 0.750 0.771 sum 2.173 8.102 -14.276 16.558 Atomic orbital electron populations 1.21872 0.92163 1.03819 1.02811 1.23371 0.95911 0.95341 0.83661 0.89799 1.21833 0.94506 0.99146 0.98333 1.20593 0.97374 1.05222 0.93975 1.19889 0.91860 0.98464 0.99474 1.20546 0.91357 1.03846 0.93004 1.98334 1.43176 1.80087 1.83453 1.20713 0.98201 0.98386 0.92322 1.19582 0.90569 0.98385 0.97883 1.20781 1.01628 1.02117 0.86642 1.19067 0.94756 0.91472 0.95309 1.21229 1.32790 1.09774 0.91991 0.92606 1.25017 0.95538 0.95408 0.98434 1.69979 1.34641 1.13276 1.35465 0.86599 0.77390 0.78231 0.85812 1.20668 1.19859 1.21254 1.19418 0.86952 0.94503 0.91935 1.87010 1.33976 1.61973 1.36888 0.91161 0.91159 0.90629 0.89340 0.89044 0.85380 0.84211 0.91731 0.91926 0.96527 0.96207 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.58 37.16 0.36 -1.18 16 2 C 0.07 0.92 4.26 -25.83 -0.11 0.81 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.10 -1.16 6.65 -26.52 -0.18 -1.33 16 5 C -0.17 -2.55 6.27 -104.10 -0.65 -3.20 16 6 C -0.08 -1.10 9.82 -39.68 -0.39 -1.49 16 7 C -0.06 -0.93 6.33 -39.45 -0.25 -1.18 16 8 Cl -0.08 -1.06 28.97 -51.86 -1.50 -2.56 16 9 C -0.08 -1.32 9.43 -39.64 -0.37 -1.69 16 10 C -0.06 -1.21 5.15 -104.35 -0.54 -1.74 16 11 C -0.07 -1.60 5.24 -27.89 -0.15 -1.75 16 12 C 0.03 0.83 4.95 -27.89 -0.14 0.69 16 13 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -27.45 13.29 55.43 0.74 -26.71 16 17 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 21 C 0.12 2.13 6.74 -38.96 -0.26 1.86 16 22 O -0.28 -5.13 10.76 -20.24 -0.22 -5.34 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.09 0.97 7.92 -51.92 -0.41 0.56 16 28 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.14 2.22 8.06 -52.49 -0.42 1.80 16 30 H 0.06 1.40 8.12 -51.93 -0.42 0.98 16 31 H 0.06 1.27 8.04 -51.93 -0.42 0.85 16 32 H 0.02 0.47 8.14 -51.92 -0.42 0.04 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 306.12 15.07 4.61 4.61 Total: -1.00 -31.69 306.12 -9.08 -40.77 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: -4.60 Total: -3.76 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -3.09 Total: -23.94 kcal Atomic # 7 Polarization: -27.45 SS G_CDS: 0.74 Total: -26.71 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.22 Total: -5.34 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.50 Total: -2.56 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.69 -9.08 -40.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260365693.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.919 kcal (2) G-P(sol) polarization free energy of solvation -31.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds