Wall clock time and date at job start Mon Mar 30 2020 07:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.66295 * 2 1 4 4 C 1.54700 * 110.75268 * 236.77936 * 2 1 3 5 5 C 1.51642 * 101.94618 * 216.44888 * 4 2 1 6 6 C 1.37747 * 132.15164 * 195.61204 * 5 4 2 7 7 C 1.38445 * 119.96610 * 179.10438 * 6 5 4 8 8 Cl 1.73601 * 120.12776 * 179.97438 * 7 6 5 9 9 C 1.38384 * 119.74171 * 359.72977 * 7 6 5 10 10 C 1.37935 * 120.33697 * 0.72999 * 9 7 6 11 11 C 1.50694 * 119.87449 * 179.72714 * 10 9 7 12 12 C 1.53001 * 109.47168 * 264.72643 * 11 10 9 13 13 C 1.50694 * 109.47168 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00563 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.38877 * 107.04843 * 15.14411 * 5 4 2 22 22 O 1.36157 * 111.21529 * 1.42956 * 21 5 4 23 23 H 1.08999 * 109.47107 * 183.21828 * 1 2 3 24 24 H 1.08998 * 109.47518 * 303.21927 * 1 2 3 25 25 H 1.09002 * 109.46935 * 63.21780 * 1 2 3 26 26 H 1.08999 * 110.93718 * 98.27961 * 4 2 1 27 27 H 1.09007 * 110.93728 * 334.60916 * 4 2 1 28 28 H 1.07999 * 120.01668 * 359.12459 * 6 5 4 29 29 H 1.08002 * 119.83817 * 180.48005 * 9 7 6 30 30 H 1.09002 * 109.47054 * 144.72896 * 11 10 9 31 31 H 1.08998 * 109.47224 * 24.72384 * 11 10 9 32 32 H 1.09007 * 109.46922 * 59.99702 * 12 11 10 33 33 H 1.09003 * 109.46836 * 300.00457 * 12 11 10 34 34 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 6 2.0782 -0.7926 -1.2102 5 6 3.3054 -1.4591 -0.6191 6 6 4.3940 -2.0723 -1.1991 7 6 5.4007 -2.5914 -0.4030 8 17 6.7741 -3.3657 -1.1294 9 6 5.3102 -2.4862 0.9739 10 6 4.2161 -1.8807 1.5560 11 6 4.1254 -1.7772 3.0566 12 6 3.3019 -2.9468 3.5996 13 6 3.2117 -2.8437 5.1003 14 1 3.6932 -2.0256 5.6154 15 6 2.5145 -3.7939 5.8160 16 7 1.9277 -4.7899 5.1889 17 14 2.4033 -3.6664 7.6763 18 1 3.5405 -4.3969 8.2914 19 1 2.4569 -2.2380 8.0787 20 1 1.1241 -4.2631 8.1377 21 6 3.1974 -1.3595 0.7619 22 8 2.0394 -0.7406 1.1222 23 1 -0.3633 -1.0260 0.0577 24 1 -0.3634 0.5630 0.8597 25 1 -0.3633 0.4631 -0.9174 26 1 2.3533 -0.1209 -2.0234 27 1 1.3561 -1.5359 -1.5484 28 1 4.4623 -2.1478 -2.2743 29 1 6.0984 -2.8837 1.5961 30 1 3.6443 -0.8374 3.3276 31 1 5.1275 -1.8091 3.4842 32 1 3.7829 -3.8867 3.3286 33 1 2.2998 -2.9150 3.1719 34 1 1.4375 -5.4585 5.6924 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260365693.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:36 Heat of formation + Delta-G solvation = -53.281818 kcal Electronic energy + Delta-G solvation = -17592.878476 eV Core-core repulsion = 14708.333210 eV Total energy + Delta-G solvation = -2884.545266 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.22291 -38.99981 -37.35605 -36.02226 -34.50192 -33.13848 -31.79451 -30.34538 -27.61178 -26.91843 -23.83366 -23.05479 -22.65366 -21.42693 -18.57663 -18.53062 -17.87364 -17.08615 -16.56435 -16.42667 -15.46562 -15.00787 -14.59029 -14.50275 -14.28339 -14.11910 -13.86731 -13.73027 -13.34933 -13.15575 -13.12292 -12.82049 -12.66062 -12.47398 -12.25149 -12.13733 -11.78411 -11.76880 -11.62984 -11.32747 -11.13842 -10.57322 -9.76312 -9.00229 -8.20537 -6.33113 0.12667 0.20794 1.11421 1.38841 1.41205 1.52368 2.29803 2.40071 2.51769 3.11924 3.38054 3.55228 3.79398 4.03058 4.07615 4.13650 4.23490 4.41649 4.45347 4.65130 4.74038 4.77143 4.83128 4.88040 5.01778 5.10068 5.14469 5.19503 5.23413 5.30232 5.46195 5.53289 5.73339 5.81384 6.17452 6.21984 6.82881 7.36028 8.91359 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.015406 B = 0.005880 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.010463 B = 4760.674358 C = 6224.209785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.061 3.939 3 H 0.101 0.899 4 C -0.092 4.092 5 C -0.166 4.166 6 C -0.067 4.067 7 C -0.064 4.064 8 Cl -0.060 7.060 9 C -0.085 4.085 10 C -0.098 4.098 11 C -0.058 4.058 12 C 0.042 3.958 13 C -0.544 4.544 14 H 0.062 0.938 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.969 3.031 18 H -0.269 1.269 19 H -0.262 1.262 20 H -0.281 1.281 21 C 0.094 3.906 22 O -0.324 6.324 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.113 0.887 26 H 0.127 0.873 27 H 0.102 0.898 28 H 0.164 0.836 29 H 0.141 0.859 30 H 0.056 0.944 31 H 0.070 0.930 32 H -0.010 1.010 33 H -0.017 1.017 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.480 9.503 -16.609 19.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.006 3.994 3 H 0.119 0.881 4 C -0.129 4.129 5 C -0.168 4.168 6 C -0.086 4.086 7 C -0.091 4.091 8 Cl -0.031 7.031 9 C -0.104 4.104 10 C -0.099 4.099 11 C -0.095 4.095 12 C 0.005 3.995 13 C -0.582 4.582 14 H 0.080 0.920 15 C -0.199 4.199 16 N -0.574 5.574 17 Si 0.792 3.208 18 H -0.195 1.195 19 H -0.187 1.187 20 H -0.207 1.207 21 C 0.048 3.952 22 O -0.239 6.239 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.132 0.868 26 H 0.145 0.855 27 H 0.120 0.880 28 H 0.181 0.819 29 H 0.159 0.841 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.008 0.992 33 H 0.001 0.999 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.363 9.305 -16.444 19.041 hybrid contribution -0.046 -0.495 1.086 1.195 sum 2.317 8.810 -15.358 17.856 Atomic orbital electron populations 1.21917 0.90785 1.03099 1.04492 1.23802 0.97066 0.95812 0.82725 0.88126 1.21949 0.92777 0.99593 0.98548 1.21032 0.98550 1.04400 0.92774 1.20289 0.90643 0.96546 1.01082 1.20635 0.92331 1.03695 0.92458 1.98339 1.42213 1.79703 1.82892 1.20748 0.97734 0.98343 0.93566 1.19435 0.92715 1.01439 0.96332 1.20431 1.00701 0.99231 0.89184 1.18848 0.93339 0.92496 0.94806 1.21672 1.33118 1.10183 0.93198 0.91951 1.26030 0.94819 0.94779 1.04233 1.70125 1.35346 1.14156 1.37794 0.85398 0.77748 0.78844 0.78765 1.19460 1.18656 1.20661 1.19675 0.86900 0.95097 0.93480 1.86968 1.34183 1.62741 1.39985 0.92756 0.91852 0.86819 0.85481 0.88010 0.81873 0.84093 0.92578 0.91111 0.99210 0.99886 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.58 71.98 0.69 -2.12 16 2 C 0.06 1.44 4.26 31.18 0.13 1.57 16 3 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 4 C -0.09 -1.83 6.65 30.73 0.20 -1.62 16 5 C -0.17 -4.69 6.27 -19.53 -0.12 -4.82 16 6 C -0.07 -1.73 9.82 22.20 0.22 -1.51 16 7 C -0.06 -1.88 6.33 22.35 0.14 -1.74 16 8 Cl -0.06 -1.51 28.97 -2.72 -0.08 -1.58 16 9 C -0.09 -2.94 9.43 22.23 0.21 -2.73 16 10 C -0.10 -3.90 5.15 -19.69 -0.10 -4.00 16 11 C -0.06 -2.65 5.24 29.85 0.16 -2.49 16 12 C 0.04 2.40 4.95 29.85 0.15 2.55 16 13 C -0.54 -32.44 9.11 25.60 0.23 -32.20 16 14 H 0.06 3.54 7.74 -2.91 -0.02 3.52 16 15 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 16 N -0.93 -59.09 13.29 21.45 0.28 -58.80 16 17 Si 0.97 45.53 29.54 68.60 2.03 47.55 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 19 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 C 0.09 3.46 6.74 22.67 0.15 3.61 16 22 O -0.32 -12.00 10.76 -95.34 -1.03 -13.03 16 23 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.10 1.85 7.92 -2.38 -0.02 1.83 16 28 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 29 H 0.14 4.63 8.06 -2.91 -0.02 4.60 16 30 H 0.06 2.57 8.12 -2.39 -0.02 2.55 16 31 H 0.07 3.00 8.04 -2.39 -0.02 2.98 16 32 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 33 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 34 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -71.63 306.12 4.82 -66.81 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: 1.09 Total: 4.14 kcal Atomic # 6 Polarization: -47.62 SS G_CDS: 2.52 Total: -45.09 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 0.28 Total: -58.80 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -1.03 Total: -13.03 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.08 Total: -1.58 kcal Total: -71.63 4.82 -66.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260365693.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.527 kcal (2) G-P(sol) polarization free energy of solvation -71.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds