Wall clock time and date at job start Mon Mar 30 2020 07:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.66677 * 2 1 4 4 C 1.54705 * 110.74840 * 123.41247 * 2 1 3 5 5 C 1.51644 * 101.92330 * 143.64246 * 4 2 1 6 6 C 1.37739 * 132.16278 * 164.27892 * 5 4 2 7 7 C 1.38448 * 119.97016 * 180.54671 * 6 5 4 8 8 Cl 1.73604 * 120.12890 * 179.97438 * 7 6 5 9 9 C 1.38383 * 119.74074 * 359.70303 * 7 6 5 10 10 C 1.37933 * 120.33346 * 0.35420 * 9 7 6 11 11 C 1.50703 * 119.86809 * 179.86498 * 10 9 7 12 12 C 1.53000 * 109.46653 * 264.72484 * 11 10 9 13 13 C 1.50708 * 109.46973 * 179.97438 * 12 11 10 14 14 H 1.07991 * 119.99789 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00008 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00089 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99938 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 269.99556 * 17 15 13 19 19 H 1.48503 * 109.47261 * 149.99737 * 17 15 13 20 20 H 1.48500 * 109.47454 * 29.99730 * 17 15 13 21 21 C 1.38884 * 107.04087 * 344.49617 * 5 4 2 22 22 O 1.36157 * 111.23123 * 359.10017 * 21 5 4 23 23 H 1.08999 * 109.47487 * 181.76702 * 1 2 3 24 24 H 1.09001 * 109.46858 * 301.76632 * 1 2 3 25 25 H 1.08998 * 109.46865 * 61.75966 * 1 2 3 26 26 H 1.09001 * 110.94115 * 261.79420 * 4 2 1 27 27 H 1.09005 * 110.94063 * 25.45034 * 4 2 1 28 28 H 1.08004 * 120.01148 * 0.52545 * 6 5 4 29 29 H 1.07998 * 119.83459 * 180.09754 * 9 7 6 30 30 H 1.08996 * 109.47057 * 144.72554 * 11 10 9 31 31 H 1.08996 * 109.47084 * 24.71590 * 11 10 9 32 32 H 1.08994 * 109.48028 * 59.99997 * 12 11 10 33 33 H 1.09000 * 109.47206 * 299.99851 * 12 11 10 34 34 H 0.96997 * 119.99848 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 6 2.0780 -0.7967 1.2076 5 6 3.3064 -1.4591 0.6145 6 6 4.3965 -2.0716 1.1923 7 6 5.4005 -2.5930 0.3942 8 17 6.7765 -3.3653 1.1181 9 6 5.3001 -2.5011 -0.9830 10 6 4.2095 -1.8869 -1.5625 11 6 4.1125 -1.7900 -3.0633 12 6 4.6534 -0.4346 -3.5228 13 6 4.5569 -0.3378 -5.0236 14 1 4.1501 -1.1606 -5.5927 15 6 4.9871 0.8015 -5.6701 16 7 4.9024 0.8862 -6.9798 17 14 5.6901 2.2249 -4.6857 18 1 4.5948 3.1533 -4.3064 19 1 6.6906 2.9501 -5.5093 20 1 6.3438 1.7031 -3.4586 21 6 3.1949 -1.3611 -0.7664 22 8 2.0393 -0.7366 -1.1247 23 1 -0.3634 -1.0271 0.0317 24 1 -0.3633 0.5410 0.8737 25 1 -0.3633 0.4863 -0.9053 26 1 2.3519 -0.1279 2.0236 27 1 1.3564 -1.5418 1.5427 28 1 4.4680 -2.1448 2.2674 29 1 6.0817 -2.9087 -1.6070 30 1 3.0702 -1.8871 -3.3670 31 1 4.6993 -2.5882 -3.5176 32 1 5.6956 -0.3373 -3.2191 33 1 4.0666 0.3638 -3.0684 34 1 5.2054 1.6876 -7.4345 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260365703.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:41 Heat of formation + Delta-G solvation = -32.576755 kcal Electronic energy + Delta-G solvation = -17678.230467 eV Core-core repulsion = 14794.583040 eV Total energy + Delta-G solvation = -2883.647427 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.14523 -37.88025 -36.25205 -34.42910 -32.89221 -31.82919 -30.71389 -29.09325 -26.67804 -25.24844 -22.23769 -21.70966 -21.49063 -19.91005 -17.47784 -16.89695 -16.71118 -15.95286 -15.43728 -14.36257 -14.18310 -13.61921 -13.53317 -13.16270 -12.96772 -12.89691 -12.87122 -12.57736 -12.30349 -12.06055 -11.75473 -11.51897 -11.23825 -11.20305 -10.91286 -10.82353 -10.36076 -10.08708 -9.87621 -9.68545 -9.16981 -8.58987 -8.51127 -7.84787 -6.02215 -3.99882 1.25687 1.35022 2.19424 3.28867 3.32476 3.39522 3.44641 3.68416 4.32473 4.44009 4.47577 4.79634 4.88618 5.05454 5.15515 5.29007 5.32271 5.36104 5.49318 5.51784 5.65667 5.78644 5.89378 5.96689 6.06870 6.24174 6.32681 6.45545 6.50870 6.71988 6.86235 7.27405 7.31337 7.45068 7.80530 8.55427 9.02582 9.60440 11.11234 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.014373 B = 0.006696 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.683905 B = 4180.520943 C = 5513.906708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.073 3.927 3 H 0.087 0.913 4 C -0.101 4.101 5 C -0.171 4.171 6 C -0.076 4.076 7 C -0.062 4.062 8 Cl -0.077 7.077 9 C -0.077 4.077 10 C -0.069 4.069 11 C -0.066 4.066 12 C -0.004 4.004 13 C -0.518 4.518 14 H 0.073 0.927 15 C 0.068 3.932 16 N -0.904 5.904 17 Si 0.877 3.123 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.265 1.265 21 C 0.118 3.882 22 O -0.288 6.288 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.129 0.871 29 H 0.142 0.858 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.016 0.984 33 H 0.013 0.987 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.491 -4.579 19.631 20.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.017 3.983 3 H 0.105 0.895 4 C -0.138 4.138 5 C -0.172 4.172 6 C -0.095 4.095 7 C -0.088 4.088 8 Cl -0.049 7.049 9 C -0.096 4.096 10 C -0.070 4.070 11 C -0.103 4.103 12 C -0.041 4.041 13 C -0.556 4.556 14 H 0.091 0.909 15 C -0.133 4.133 16 N -0.543 5.543 17 Si 0.704 3.296 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.190 1.190 21 C 0.072 3.928 22 O -0.202 6.202 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.147 0.853 29 H 0.159 0.841 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.034 0.966 33 H 0.031 0.969 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.466 -4.515 19.329 20.346 hybrid contribution 0.575 0.839 0.645 1.205 sum -3.890 -3.676 19.975 20.679 Atomic orbital electron populations 1.21871 0.92116 1.03328 1.03245 1.23404 0.95832 0.95730 0.83320 0.89494 1.21838 0.94356 0.99138 0.98456 1.20611 0.97500 1.05142 0.93956 1.19914 0.91798 0.98228 0.99541 1.20564 0.91283 1.03990 0.93013 1.98340 1.42940 1.80038 1.83535 1.20746 0.97726 0.98666 0.92421 1.19595 0.90813 0.98625 0.97935 1.20580 1.02367 1.00838 0.86513 1.19530 0.95728 0.91709 0.97172 1.21120 1.41622 1.03017 0.89854 0.90876 1.24990 0.95314 0.98301 0.94725 1.69912 1.48062 1.28621 1.07674 0.86819 0.79343 0.82819 0.80609 1.20323 1.21340 1.18980 1.19433 0.87103 0.94297 0.91995 1.86947 1.34172 1.61989 1.37047 0.91512 0.90509 0.90947 0.89206 0.89102 0.85291 0.84055 0.91078 0.91302 0.96554 0.96898 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.60 37.16 0.36 -1.03 16 2 C 0.07 0.89 4.26 -25.83 -0.11 0.78 16 3 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.10 -1.07 6.65 -26.52 -0.18 -1.25 16 5 C -0.17 -2.40 6.27 -104.10 -0.65 -3.05 16 6 C -0.08 -1.01 9.82 -39.69 -0.39 -1.40 16 7 C -0.06 -0.89 6.33 -39.45 -0.25 -1.14 16 8 Cl -0.08 -0.98 28.97 -51.86 -1.50 -2.48 16 9 C -0.08 -1.23 9.43 -39.64 -0.37 -1.60 16 10 C -0.07 -1.24 5.15 -104.35 -0.54 -1.78 16 11 C -0.07 -1.36 5.24 -27.88 -0.15 -1.50 16 12 C 0.00 -0.10 4.02 -27.88 -0.11 -0.21 16 13 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 14 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 15 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 16 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 17 Si 0.88 22.24 27.47 -169.99 -4.67 17.57 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 21 C 0.12 2.00 6.75 -38.96 -0.26 1.74 16 22 O -0.29 -4.89 10.76 -20.24 -0.22 -5.11 16 23 H 0.07 0.61 8.11 -51.93 -0.42 0.19 16 24 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.09 0.83 7.90 -51.93 -0.41 0.42 16 28 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 29 H 0.14 2.11 8.06 -52.49 -0.42 1.68 16 30 H 0.07 1.51 8.12 -51.93 -0.42 1.08 16 31 H 0.07 1.35 8.04 -51.93 -0.42 0.94 16 32 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 33 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 34 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 302.47 15.07 4.56 4.56 Total: -1.00 -31.80 302.47 -8.70 -40.50 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: -4.56 Total: -3.72 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -3.08 Total: -23.88 kcal Atomic # 7 Polarization: -28.20 SS G_CDS: 0.77 Total: -27.43 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.22 Total: -5.11 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.57 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.50 Total: -2.48 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.80 -8.70 -40.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260365703.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.926 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds