Wall clock time and date at job start Mon Mar 30 2020 07:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.66677 * 2 1 4 4 C 1.54705 * 110.74840 * 123.41247 * 2 1 3 5 5 C 1.51644 * 101.92330 * 143.64246 * 4 2 1 6 6 C 1.37739 * 132.16278 * 164.27892 * 5 4 2 7 7 C 1.38448 * 119.97016 * 180.54671 * 6 5 4 8 8 Cl 1.73604 * 120.12890 * 179.97438 * 7 6 5 9 9 C 1.38383 * 119.74074 * 359.70303 * 7 6 5 10 10 C 1.37933 * 120.33346 * 0.35420 * 9 7 6 11 11 C 1.50703 * 119.86809 * 179.86498 * 10 9 7 12 12 C 1.53000 * 109.46653 * 264.72484 * 11 10 9 13 13 C 1.50708 * 109.46973 * 179.97438 * 12 11 10 14 14 H 1.07991 * 119.99789 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00008 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00089 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99938 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 269.99556 * 17 15 13 19 19 H 1.48503 * 109.47261 * 149.99737 * 17 15 13 20 20 H 1.48500 * 109.47454 * 29.99730 * 17 15 13 21 21 C 1.38884 * 107.04087 * 344.49617 * 5 4 2 22 22 O 1.36157 * 111.23123 * 359.10017 * 21 5 4 23 23 H 1.08999 * 109.47487 * 181.76702 * 1 2 3 24 24 H 1.09001 * 109.46858 * 301.76632 * 1 2 3 25 25 H 1.08998 * 109.46865 * 61.75966 * 1 2 3 26 26 H 1.09001 * 110.94115 * 261.79420 * 4 2 1 27 27 H 1.09005 * 110.94063 * 25.45034 * 4 2 1 28 28 H 1.08004 * 120.01148 * 0.52545 * 6 5 4 29 29 H 1.07998 * 119.83459 * 180.09754 * 9 7 6 30 30 H 1.08996 * 109.47057 * 144.72554 * 11 10 9 31 31 H 1.08996 * 109.47084 * 24.71590 * 11 10 9 32 32 H 1.08994 * 109.48028 * 59.99997 * 12 11 10 33 33 H 1.09000 * 109.47206 * 299.99851 * 12 11 10 34 34 H 0.96997 * 119.99848 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 6 2.0780 -0.7967 1.2076 5 6 3.3064 -1.4591 0.6145 6 6 4.3965 -2.0716 1.1923 7 6 5.4005 -2.5930 0.3942 8 17 6.7765 -3.3653 1.1181 9 6 5.3001 -2.5011 -0.9830 10 6 4.2095 -1.8869 -1.5625 11 6 4.1125 -1.7900 -3.0633 12 6 4.6534 -0.4346 -3.5228 13 6 4.5569 -0.3378 -5.0236 14 1 4.1501 -1.1606 -5.5927 15 6 4.9871 0.8015 -5.6701 16 7 4.9024 0.8862 -6.9798 17 14 5.6901 2.2249 -4.6857 18 1 4.5948 3.1533 -4.3064 19 1 6.6906 2.9501 -5.5093 20 1 6.3438 1.7031 -3.4586 21 6 3.1949 -1.3611 -0.7664 22 8 2.0393 -0.7366 -1.1247 23 1 -0.3634 -1.0271 0.0317 24 1 -0.3633 0.5410 0.8737 25 1 -0.3633 0.4863 -0.9053 26 1 2.3519 -0.1279 2.0236 27 1 1.3564 -1.5418 1.5427 28 1 4.4680 -2.1448 2.2674 29 1 6.0817 -2.9087 -1.6070 30 1 3.0702 -1.8871 -3.3670 31 1 4.6993 -2.5882 -3.5176 32 1 5.6956 -0.3373 -3.2191 33 1 4.0666 0.3638 -3.0684 34 1 5.2054 1.6876 -7.4345 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260365703.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:40 Heat of formation + Delta-G solvation = -50.546223 kcal Electronic energy + Delta-G solvation = -17679.009682 eV Core-core repulsion = 14794.583040 eV Total energy + Delta-G solvation = -2884.426642 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.24214 -39.02072 -37.37116 -36.04487 -34.52823 -33.26941 -31.86337 -30.63961 -27.63735 -27.00433 -23.55941 -22.98682 -22.67733 -21.42698 -19.02186 -18.53758 -17.87919 -17.12395 -16.52936 -16.34898 -15.47368 -15.04171 -14.73575 -14.66409 -14.43609 -14.16766 -13.86788 -13.82429 -13.44193 -13.21612 -13.11292 -12.93519 -12.71398 -12.33114 -12.13260 -12.12220 -11.90208 -11.69604 -11.58209 -11.34031 -11.28065 -10.79661 -9.79341 -9.02087 -8.32375 -6.36319 0.10823 0.18316 1.11129 1.31063 1.32901 1.45490 2.24634 2.32802 2.53637 3.02485 3.37117 3.51362 3.77403 4.01888 4.04559 4.12393 4.22330 4.37429 4.42354 4.63589 4.65803 4.75180 4.78336 4.86240 4.98808 5.04062 5.10737 5.15270 5.22144 5.25065 5.36802 5.48235 5.60238 5.62923 6.16110 6.24610 6.70163 7.27977 8.84451 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.014373 B = 0.006696 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.683905 B = 4180.520943 C = 5513.906708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.059 3.941 3 H 0.087 0.913 4 C -0.090 4.090 5 C -0.165 4.165 6 C -0.065 4.065 7 C -0.065 4.065 8 Cl -0.061 7.061 9 C -0.083 4.083 10 C -0.098 4.098 11 C -0.054 4.054 12 C 0.006 3.994 13 C -0.532 4.532 14 H 0.035 0.965 15 C 0.008 3.992 16 N -0.948 5.948 17 Si 0.946 3.054 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.251 1.251 21 C 0.095 3.905 22 O -0.322 6.322 23 H 0.067 0.933 24 H 0.110 0.890 25 H 0.058 0.942 26 H 0.121 0.879 27 H 0.112 0.888 28 H 0.163 0.837 29 H 0.143 0.857 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.019 0.981 33 H 0.008 0.992 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.337 -3.854 23.449 24.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.003 3.997 3 H 0.105 0.895 4 C -0.127 4.127 5 C -0.167 4.167 6 C -0.083 4.083 7 C -0.091 4.091 8 Cl -0.032 7.032 9 C -0.102 4.102 10 C -0.099 4.099 11 C -0.092 4.092 12 C -0.032 4.032 13 C -0.570 4.570 14 H 0.053 0.947 15 C -0.189 4.189 16 N -0.589 5.589 17 Si 0.769 3.231 18 H -0.192 1.192 19 H -0.203 1.203 20 H -0.175 1.175 21 C 0.049 3.951 22 O -0.237 6.237 23 H 0.086 0.914 24 H 0.128 0.872 25 H 0.077 0.923 26 H 0.139 0.861 27 H 0.130 0.870 28 H 0.181 0.819 29 H 0.161 0.839 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.037 0.963 33 H 0.026 0.974 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.318 -3.805 23.160 23.865 hybrid contribution 0.487 0.533 -0.551 0.909 sum -3.831 -3.272 22.610 23.164 Atomic orbital electron populations 1.21899 0.90184 1.03797 1.04143 1.23796 0.97423 0.95566 0.82874 0.89511 1.21935 0.92925 0.99608 0.98187 1.21021 0.98611 1.04262 0.92760 1.20295 0.90582 0.96329 1.01096 1.20645 0.92170 1.03841 0.92486 1.98347 1.42100 1.79694 1.83022 1.20771 0.97190 0.98658 0.93593 1.19352 0.92909 1.01683 0.95997 1.20277 1.00896 0.98611 0.89406 1.19377 0.95836 0.93946 0.94020 1.21446 1.41229 1.02115 0.92215 0.94686 1.25946 0.95682 1.01444 0.95805 1.70055 1.49367 1.29843 1.09609 0.85719 0.78971 0.78969 0.79411 1.19235 1.20311 1.17498 1.19668 0.87115 0.94822 0.93472 1.86917 1.34358 1.62617 1.39830 0.91402 0.87188 0.92270 0.86118 0.87016 0.81910 0.83886 0.92827 0.91343 0.96310 0.97379 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.60 71.98 0.69 -1.68 16 2 C 0.06 1.31 4.26 31.17 0.13 1.45 16 3 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 4 C -0.09 -1.56 6.65 30.73 0.20 -1.36 16 5 C -0.17 -4.18 6.27 -19.53 -0.12 -4.30 16 6 C -0.06 -1.48 9.82 22.20 0.22 -1.26 16 7 C -0.06 -1.70 6.33 22.35 0.14 -1.56 16 8 Cl -0.06 -1.38 28.97 -2.72 -0.08 -1.46 16 9 C -0.08 -2.62 9.43 22.23 0.21 -2.41 16 10 C -0.10 -3.58 5.15 -19.69 -0.10 -3.68 16 11 C -0.05 -2.35 5.24 29.85 0.16 -2.20 16 12 C 0.01 0.28 4.02 29.85 0.12 0.40 16 13 C -0.53 -32.16 9.66 25.60 0.25 -31.91 16 14 H 0.03 2.30 7.99 -2.92 -0.02 2.28 16 15 C 0.01 0.50 5.47 84.65 0.46 0.96 16 16 N -0.95 -60.91 13.96 21.45 0.30 -60.61 16 17 Si 0.95 46.06 27.47 68.60 1.88 47.94 16 18 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 20 H -0.25 -11.58 6.54 99.48 0.65 -10.92 16 21 C 0.09 3.18 6.75 22.67 0.15 3.33 16 22 O -0.32 -10.95 10.76 -95.34 -1.03 -11.98 16 23 H 0.07 1.10 8.11 -2.39 -0.02 1.08 16 24 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 26 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.11 1.53 7.90 -2.38 -0.02 1.51 16 28 H 0.16 2.63 8.06 -2.91 -0.02 2.60 16 29 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 30 H 0.05 2.43 8.12 -2.39 -0.02 2.41 16 31 H 0.07 2.85 8.04 -2.39 -0.02 2.83 16 32 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 33 H 0.01 0.40 7.57 -2.39 -0.02 0.39 16 34 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -71.18 302.47 4.63 -66.55 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: 1.03 Total: 3.76 kcal Atomic # 6 Polarization: -46.72 SS G_CDS: 2.51 Total: -44.21 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: 0.30 Total: -60.61 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -1.03 Total: -11.98 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.88 Total: 47.94 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.08 Total: -1.46 kcal Total: -71.18 4.63 -66.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260365703.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.007 kcal (2) G-P(sol) polarization free energy of solvation -71.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds