Wall clock time and date at job start Mon Mar 30 2020 07:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38204 * 120.02082 * 2 1 4 4 C 1.38227 * 120.07489 * 180.23751 * 3 2 1 5 5 C 1.50703 * 119.93940 * 179.76721 * 4 3 2 6 6 H 1.08997 * 109.47302 * 359.71972 * 5 4 3 7 7 C 1.50703 * 109.47018 * 239.71938 * 5 4 3 8 8 H 1.07992 * 119.99852 * 265.22002 * 7 5 4 9 9 C 1.37877 * 119.99503 * 85.22190 * 7 5 4 10 10 N 1.31506 * 120.00229 * 5.09018 * 9 7 5 11 11 Si 1.86804 * 119.99560 * 185.08969 * 9 7 5 12 12 H 1.48493 * 109.47253 * 90.00011 * 11 9 7 13 13 H 1.48502 * 109.47047 * 210.00136 * 11 9 7 14 14 H 1.48505 * 109.47269 * 329.99849 * 11 9 7 15 15 C 1.53006 * 109.47395 * 119.71830 * 5 4 3 16 16 C 1.52998 * 117.50032 * 254.13335 * 15 5 4 17 17 C 1.52997 * 117.49952 * 185.46989 * 15 5 4 18 18 C 1.38292 * 120.12537 * 359.48306 * 4 3 2 19 19 C 1.38215 * 120.03851 * 0.24243 * 18 4 3 20 20 Cl 1.73599 * 120.03890 * 180.02562 * 19 18 4 21 21 C 1.38666 * 120.02746 * 179.70532 * 2 1 3 22 22 O 1.35928 * 120.05522 * 0.03539 * 21 2 1 23 23 H 1.08999 * 109.46660 * 270.29333 * 1 2 3 24 24 H 1.08992 * 109.47264 * 30.30036 * 1 2 3 25 25 H 1.08999 * 109.46739 * 150.30558 * 1 2 3 26 26 H 1.08003 * 119.95938 * 359.97438 * 3 2 1 27 27 H 0.97002 * 119.99725 * 179.97438 * 10 9 7 28 28 H 1.09000 * 115.54520 * 39.80357 * 15 5 4 29 29 H 1.08995 * 117.49812 * 359.97438 * 16 15 5 30 30 H 1.08996 * 117.49828 * 145.01746 * 16 15 5 31 31 H 1.08996 * 117.49758 * 214.98304 * 17 15 5 32 32 H 1.08996 * 117.49899 * 359.97438 * 17 15 5 33 33 H 1.07999 * 119.98405 * 180.25707 * 18 4 3 34 34 H 0.96693 * 114.00850 * 269.98289 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1966 0.0000 4 6 3.5807 1.1979 -0.0050 5 6 4.3316 2.5046 -0.0102 6 1 3.6216 3.3316 -0.0144 7 6 5.1986 2.5807 -1.2405 8 1 6.2341 2.2781 -1.1909 9 6 4.6698 3.0366 -2.4294 10 7 3.4392 3.4989 -2.4673 11 14 5.7013 2.9977 -3.9863 12 1 5.5001 1.7009 -4.6811 13 1 5.2884 4.1083 -4.8815 14 1 7.1355 3.1532 -3.6339 15 6 5.2102 2.5930 1.2392 16 6 4.7561 3.5336 2.3572 17 6 5.9584 3.9047 1.4854 18 6 4.2759 0.0025 0.0009 19 6 3.5894 -1.1971 0.0066 20 17 4.4622 -2.6977 0.0146 21 6 2.2009 -1.2005 0.0062 22 8 1.5229 -2.3787 0.0115 23 1 -0.3632 0.0053 1.0277 24 1 -0.3633 0.8872 -0.5184 25 1 -0.3633 -0.8927 -0.5091 26 1 1.6581 2.1318 -0.0004 27 1 3.0673 3.8200 -3.3037 28 1 5.7072 1.6678 1.5308 29 1 3.8315 4.0898 2.2024 30 1 4.9546 3.2274 3.3842 31 1 6.9474 3.8424 1.9393 32 1 5.8250 4.7045 0.7570 33 1 5.3559 0.0062 0.0012 34 1 1.3265 -2.7155 0.8963 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260366048.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:42 Heat of formation + Delta-G solvation = -19.338313 kcal Electronic energy + Delta-G solvation = -17989.377115 eV Core-core repulsion = 15106.303750 eV Total energy + Delta-G solvation = -2883.073365 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.43994 -37.28156 -36.03973 -35.72092 -33.01161 -31.96346 -30.12057 -27.24848 -26.08387 -23.67152 -21.67665 -21.58427 -20.89655 -18.98448 -17.86929 -16.49922 -15.61838 -15.36852 -14.95529 -14.71637 -14.19247 -13.41270 -13.23965 -12.84132 -12.72965 -12.30314 -12.13182 -11.86227 -11.63713 -11.35348 -11.13055 -10.88539 -10.82146 -10.77432 -10.48470 -10.44293 -9.96970 -9.93033 -9.44363 -9.33702 -8.80095 -8.53424 -7.99033 -7.59982 -6.13738 -4.16525 1.84991 1.91950 2.66478 3.27272 3.34535 3.36664 4.23692 4.37199 4.63169 4.71581 5.18568 5.29826 5.51456 5.65014 5.81202 5.85279 5.87432 5.96825 6.07006 6.17141 6.25251 6.25759 6.38103 6.41892 6.62820 6.71996 6.85966 6.91045 6.99334 7.11521 7.37249 7.51932 7.71860 7.84476 8.01843 8.23672 8.88753 9.47465 10.94271 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.007493 C = 0.006940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.748029 B = 3735.865614 C = 4033.812483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.105 4.105 3 C -0.098 4.098 4 C -0.004 4.004 5 C 0.096 3.904 6 H 0.065 0.935 7 C -0.504 4.504 8 H 0.060 0.940 9 C 0.068 3.932 10 N -0.883 5.883 11 Si 0.889 3.111 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.272 1.272 15 C -0.121 4.121 16 C -0.200 4.200 17 C -0.170 4.170 18 C -0.098 4.098 19 C -0.057 4.057 20 Cl -0.087 7.087 21 C 0.072 3.928 22 O -0.489 6.489 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.125 0.875 27 H 0.263 0.737 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.129 0.871 34 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.656 -5.609 7.655 9.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.106 4.106 3 C -0.116 4.116 4 C -0.005 4.005 5 C 0.078 3.922 6 H 0.083 0.917 7 C -0.541 4.541 8 H 0.078 0.922 9 C -0.135 4.135 10 N -0.520 5.520 11 Si 0.716 3.284 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.197 1.197 15 C -0.139 4.139 16 C -0.237 4.237 17 C -0.207 4.207 18 C -0.117 4.117 19 C -0.084 4.084 20 Cl -0.058 7.058 21 C 0.027 3.973 22 O -0.297 6.297 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.143 0.857 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.147 0.853 34 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -2.683 -5.597 6.903 9.283 hybrid contribution 0.604 -0.297 -0.582 0.889 sum -2.079 -5.894 6.321 8.889 Atomic orbital electron populations 1.20602 0.91134 1.02832 1.01550 1.20028 0.96140 0.92084 1.02309 1.21004 0.94227 0.96593 0.99821 1.20692 0.92933 0.96621 0.90284 1.17658 0.93532 0.90238 0.90816 0.91689 1.20913 0.96477 1.43624 0.93126 0.92163 1.24966 0.95077 0.94377 0.99066 1.69899 1.14537 1.40786 1.26798 0.86633 0.80704 0.77797 0.83238 1.20515 1.21215 1.19704 1.22449 1.01830 0.92963 0.96657 1.22992 0.99184 1.06135 0.95349 1.22731 0.94625 1.00896 1.02496 1.20800 1.00403 0.89645 1.00849 1.21307 0.91190 0.87072 1.08866 1.98304 1.76530 1.33799 1.97200 1.17744 0.87616 0.85176 1.06796 1.84844 1.76285 1.36127 1.32416 0.91939 0.91483 0.91445 0.85667 0.92742 0.89675 0.89468 0.90457 0.90473 0.88611 0.85314 0.77044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.51 9.79 36.00 0.35 -1.16 16 2 C -0.10 -1.89 5.89 -104.48 -0.62 -2.51 16 3 C -0.10 -1.98 9.32 -39.60 -0.37 -2.35 16 4 C 0.00 -0.09 4.77 -104.60 -0.50 -0.59 16 5 C 0.10 2.18 2.06 -92.92 -0.19 1.99 16 6 H 0.06 1.62 7.07 -51.93 -0.37 1.26 16 7 C -0.50 -12.79 7.72 -34.44 -0.27 -13.06 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.07 1.80 5.45 -17.82 -0.10 1.71 16 10 N -0.88 -24.04 12.92 55.43 0.72 -23.33 16 11 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 15 C -0.12 -2.36 4.92 -90.62 -0.45 -2.80 16 16 C -0.20 -3.40 10.18 -26.69 -0.27 -3.68 16 17 C -0.17 -3.08 10.02 -26.69 -0.27 -3.35 16 18 C -0.10 -2.01 8.44 -39.57 -0.33 -2.34 16 19 C -0.06 -1.09 6.33 -39.36 -0.25 -1.34 16 20 Cl -0.09 -1.47 28.51 -51.86 -1.48 -2.94 16 21 C 0.07 1.30 6.67 -39.19 -0.26 1.04 16 22 O -0.49 -7.59 12.01 -19.51 -0.23 -7.82 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 25 H 0.07 0.94 7.53 -51.93 -0.39 0.55 16 26 H 0.13 2.52 7.94 -52.48 -0.42 2.10 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.09 1.60 7.42 -51.93 -0.39 1.22 16 29 H 0.09 1.50 8.08 -51.93 -0.42 1.08 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 33 H 0.13 2.60 7.80 -52.49 -0.41 2.19 16 34 H 0.38 4.08 9.06 45.56 0.41 4.49 16 LS Contribution 307.54 15.07 4.63 4.63 Total: -1.00 -27.51 307.54 -8.53 -36.04 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -3.63 Total: 6.03 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: -3.52 Total: -28.45 kcal Atomic # 7 Polarization: -24.04 SS G_CDS: 0.72 Total: -23.33 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.23 Total: -7.82 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -1.48 Total: -2.94 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.51 -8.53 -36.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260366048.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.701 kcal (2) G-P(sol) polarization free energy of solvation -27.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds