Wall clock time and date at job start Mon Mar 30 2020 07:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38204 * 120.02082 * 2 1 4 4 C 1.38227 * 120.07489 * 180.23751 * 3 2 1 5 5 C 1.50703 * 119.93940 * 179.76721 * 4 3 2 6 6 H 1.08997 * 109.47302 * 359.71972 * 5 4 3 7 7 C 1.50703 * 109.47018 * 239.71938 * 5 4 3 8 8 H 1.07992 * 119.99852 * 265.22002 * 7 5 4 9 9 C 1.37877 * 119.99503 * 85.22190 * 7 5 4 10 10 N 1.31506 * 120.00229 * 5.09018 * 9 7 5 11 11 Si 1.86804 * 119.99560 * 185.08969 * 9 7 5 12 12 H 1.48493 * 109.47253 * 90.00011 * 11 9 7 13 13 H 1.48502 * 109.47047 * 210.00136 * 11 9 7 14 14 H 1.48505 * 109.47269 * 329.99849 * 11 9 7 15 15 C 1.53006 * 109.47395 * 119.71830 * 5 4 3 16 16 C 1.52998 * 117.50032 * 254.13335 * 15 5 4 17 17 C 1.52997 * 117.49952 * 185.46989 * 15 5 4 18 18 C 1.38292 * 120.12537 * 359.48306 * 4 3 2 19 19 C 1.38215 * 120.03851 * 0.24243 * 18 4 3 20 20 Cl 1.73599 * 120.03890 * 180.02562 * 19 18 4 21 21 C 1.38666 * 120.02746 * 179.70532 * 2 1 3 22 22 O 1.35928 * 120.05522 * 0.03539 * 21 2 1 23 23 H 1.08999 * 109.46660 * 270.29333 * 1 2 3 24 24 H 1.08992 * 109.47264 * 30.30036 * 1 2 3 25 25 H 1.08999 * 109.46739 * 150.30558 * 1 2 3 26 26 H 1.08003 * 119.95938 * 359.97438 * 3 2 1 27 27 H 0.97002 * 119.99725 * 179.97438 * 10 9 7 28 28 H 1.09000 * 115.54520 * 39.80357 * 15 5 4 29 29 H 1.08995 * 117.49812 * 359.97438 * 16 15 5 30 30 H 1.08996 * 117.49828 * 145.01746 * 16 15 5 31 31 H 1.08996 * 117.49758 * 214.98304 * 17 15 5 32 32 H 1.08996 * 117.49899 * 359.97438 * 17 15 5 33 33 H 1.07999 * 119.98405 * 180.25707 * 18 4 3 34 34 H 0.96693 * 114.00850 * 269.98289 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1966 0.0000 4 6 3.5807 1.1979 -0.0050 5 6 4.3316 2.5046 -0.0102 6 1 3.6216 3.3316 -0.0144 7 6 5.1986 2.5807 -1.2405 8 1 6.2341 2.2781 -1.1909 9 6 4.6698 3.0366 -2.4294 10 7 3.4392 3.4989 -2.4673 11 14 5.7013 2.9977 -3.9863 12 1 5.5001 1.7009 -4.6811 13 1 5.2884 4.1083 -4.8815 14 1 7.1355 3.1532 -3.6339 15 6 5.2102 2.5930 1.2392 16 6 4.7561 3.5336 2.3572 17 6 5.9584 3.9047 1.4854 18 6 4.2759 0.0025 0.0009 19 6 3.5894 -1.1971 0.0066 20 17 4.4622 -2.6977 0.0146 21 6 2.2009 -1.2005 0.0062 22 8 1.5229 -2.3787 0.0115 23 1 -0.3632 0.0053 1.0277 24 1 -0.3633 0.8872 -0.5184 25 1 -0.3633 -0.8927 -0.5091 26 1 1.6581 2.1318 -0.0004 27 1 3.0673 3.8200 -3.3037 28 1 5.7072 1.6678 1.5308 29 1 3.8315 4.0898 2.2024 30 1 4.9546 3.2274 3.3842 31 1 6.9474 3.8424 1.9393 32 1 5.8250 4.7045 0.7570 33 1 5.3559 0.0062 0.0012 34 1 1.3265 -2.7155 0.8963 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260366048.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:42 Heat of formation + Delta-G solvation = -33.474698 kcal Electronic energy + Delta-G solvation = -17989.990115 eV Core-core repulsion = 15106.303750 eV Total energy + Delta-G solvation = -2883.686365 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.89301 -38.76768 -37.42772 -37.13085 -34.82980 -33.43764 -31.73218 -28.86091 -27.52286 -25.48257 -23.15066 -23.02238 -22.35866 -20.58323 -19.23540 -18.38301 -17.07474 -16.85699 -16.63716 -16.30360 -15.69935 -14.92601 -14.72080 -14.42800 -14.03695 -13.83613 -13.53031 -13.32839 -13.19459 -12.93637 -12.87485 -12.52661 -12.41517 -12.21788 -12.12372 -11.92255 -11.56972 -11.36280 -11.11078 -10.96043 -10.52368 -10.38969 -9.46069 -9.12448 -8.12140 -6.19111 0.34131 0.44600 1.21788 1.38545 1.42057 1.48769 2.41053 2.77148 3.17449 3.26995 3.29724 3.92644 4.04967 4.26819 4.36049 4.42154 4.48525 4.56526 4.71525 4.82820 4.86990 4.92429 4.96654 4.97330 5.22570 5.29277 5.34633 5.41385 5.47348 5.55487 5.74119 5.79166 5.99628 6.05639 6.36116 6.85861 6.91557 7.46206 8.94398 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.007493 C = 0.006940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.748029 B = 3735.865614 C = 4033.812483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.104 4.104 3 C -0.113 4.113 4 C -0.025 4.025 5 C 0.101 3.899 6 H 0.032 0.968 7 C -0.506 4.506 8 H 0.053 0.947 9 C 0.023 3.977 10 N -0.911 5.911 11 Si 0.937 3.063 12 H -0.284 1.284 13 H -0.285 1.285 14 H -0.266 1.266 15 C -0.140 4.140 16 C -0.178 4.178 17 C -0.171 4.171 18 C -0.109 4.109 19 C -0.065 4.065 20 Cl -0.068 7.068 21 C 0.081 3.919 22 O -0.488 6.488 23 H 0.090 0.910 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.116 0.884 27 H 0.260 0.740 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.124 0.876 34 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.889 -7.031 8.640 11.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.105 4.105 3 C -0.131 4.131 4 C -0.026 4.026 5 C 0.082 3.918 6 H 0.051 0.949 7 C -0.544 4.544 8 H 0.072 0.928 9 C -0.177 4.177 10 N -0.550 5.550 11 Si 0.764 3.236 12 H -0.210 1.210 13 H -0.211 1.211 14 H -0.190 1.190 15 C -0.158 4.158 16 C -0.215 4.215 17 C -0.208 4.208 18 C -0.128 4.128 19 C -0.092 4.092 20 Cl -0.039 7.039 21 C 0.036 3.964 22 O -0.299 6.299 23 H 0.108 0.892 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.134 0.866 27 H 0.069 0.931 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.125 0.875 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.142 0.858 34 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -2.909 -7.032 7.911 10.977 hybrid contribution 0.642 0.038 -0.818 1.041 sum -2.267 -6.994 7.093 10.216 Atomic orbital electron populations 1.20654 0.88427 1.03167 1.03424 1.20349 0.98086 0.91242 1.00848 1.21015 0.93963 0.97288 1.00828 1.20553 0.93557 0.96320 0.92135 1.17448 0.92980 0.89994 0.91356 0.94950 1.21188 0.96500 1.42435 0.94272 0.92830 1.25572 0.95975 0.94772 1.01412 1.70005 1.15716 1.42308 1.26962 0.85869 0.79871 0.77318 0.80572 1.21029 1.21067 1.18987 1.22344 1.02733 0.94007 0.96763 1.23027 0.98396 1.03988 0.96049 1.22752 0.96328 0.99211 1.02499 1.20730 1.00199 0.90012 1.01871 1.21405 0.91880 0.87432 1.08477 1.98305 1.76257 1.32281 1.97096 1.17765 0.87390 0.85981 1.05280 1.84780 1.75699 1.34877 1.34592 0.89188 0.91641 0.90559 0.86620 0.93111 0.88938 0.90059 0.87478 0.88028 0.90790 0.85799 0.74138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.66 9.79 71.24 0.70 -1.96 16 2 C -0.10 -3.63 5.89 -19.77 -0.12 -3.75 16 3 C -0.11 -4.59 9.32 22.26 0.21 -4.38 16 4 C -0.02 -1.08 4.77 -19.85 -0.09 -1.17 16 5 C 0.10 4.70 2.06 -12.28 -0.03 4.67 16 6 H 0.03 1.69 7.07 -2.39 -0.02 1.68 16 7 C -0.51 -26.29 7.72 25.60 0.20 -26.09 16 8 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 9 C 0.02 1.21 5.45 84.66 0.46 1.67 16 10 N -0.91 -51.09 12.92 21.45 0.28 -50.81 16 11 Si 0.94 43.40 29.54 68.60 2.03 45.42 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 13 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 14 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 15 C -0.14 -5.47 4.92 -10.79 -0.05 -5.52 16 16 C -0.18 -5.86 10.18 30.62 0.31 -5.55 16 17 C -0.17 -6.08 10.02 30.62 0.31 -5.78 16 18 C -0.11 -4.45 8.44 22.28 0.19 -4.26 16 19 C -0.06 -2.37 6.33 22.41 0.14 -2.23 16 20 Cl -0.07 -2.17 28.51 -2.72 -0.08 -2.25 16 21 C 0.08 2.77 6.67 22.52 0.15 2.92 16 22 O -0.49 -13.58 12.01 -92.74 -1.11 -14.70 16 23 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.06 1.76 8.09 -2.39 -0.02 1.74 16 25 H 0.08 1.90 7.53 -2.39 -0.02 1.88 16 26 H 0.12 4.82 7.94 -2.91 -0.02 4.80 16 27 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 28 H 0.09 3.44 7.42 -2.39 -0.02 3.42 16 29 H 0.08 2.77 8.08 -2.39 -0.02 2.75 16 30 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 31 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 32 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 33 H 0.12 5.03 7.80 -2.91 -0.02 5.01 16 34 H 0.40 7.14 9.06 -74.06 -0.67 6.47 16 Total: -1.00 -59.12 307.54 3.93 -55.20 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.44 Total: 18.56 kcal Atomic # 6 Polarization: -53.80 SS G_CDS: 2.37 Total: -51.43 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.28 Total: -50.81 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -1.11 Total: -14.70 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 17 Polarization: -2.17 SS G_CDS: -0.08 Total: -2.25 kcal Total: -59.12 3.93 -55.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260366048.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.721 kcal (2) G-P(sol) polarization free energy of solvation -59.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds