Wall clock time and date at job start Mon Mar 30 2020 07:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38190 * 120.02227 * 2 1 4 4 C 1.38231 * 120.07607 * 179.76876 * 3 2 1 5 5 C 1.50701 * 119.94299 * 180.27902 * 4 3 2 6 6 H 1.09005 * 109.46799 * 0.23143 * 5 4 3 7 7 C 1.50700 * 109.47627 * 120.23094 * 5 4 3 8 8 H 1.08001 * 119.99274 * 0.02562 * 7 5 4 9 9 C 1.37877 * 120.00274 * 180.02562 * 7 5 4 10 10 N 1.31507 * 120.00068 * 359.97438 * 9 7 5 11 11 Si 1.86804 * 119.99875 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47239 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47258 * 119.99603 * 11 9 7 14 14 H 1.48498 * 109.46926 * 240.00161 * 11 9 7 15 15 C 1.52999 * 109.47404 * 240.23392 * 5 4 3 16 16 C 1.53000 * 117.50021 * 128.62055 * 15 5 4 17 17 C 1.53001 * 60.00075 * 252.50981 * 16 15 5 18 18 C 1.38288 * 120.12157 * 0.51329 * 4 3 2 19 19 C 1.38213 * 120.03875 * 359.74073 * 18 4 3 20 20 Cl 1.73606 * 120.03696 * 180.02562 * 19 18 4 21 21 C 1.38663 * 120.02157 * 180.28112 * 2 1 3 22 22 O 1.35927 * 120.06066 * 359.97438 * 21 2 1 23 23 H 1.09002 * 109.47152 * 269.72009 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.72110 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.72090 * 1 2 3 26 26 H 1.08006 * 119.96284 * 0.02562 * 3 2 1 27 27 H 0.97005 * 120.00402 * 180.02562 * 10 9 7 28 28 H 1.08998 * 115.55042 * 274.32735 * 15 5 4 29 29 H 1.08997 * 117.49793 * 359.97438 * 16 15 5 30 30 H 1.08993 * 117.50032 * 145.02256 * 16 15 5 31 31 H 1.09003 * 117.50051 * 252.51433 * 17 16 15 32 32 H 1.09005 * 117.51708 * 107.47615 * 17 16 15 33 33 H 1.08001 * 119.98377 * 179.77269 * 18 4 3 34 34 H 0.96692 * 114.00213 * 89.99724 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1965 0.0000 4 6 3.5807 1.1978 0.0048 5 6 4.3317 2.5044 0.0112 6 1 3.6217 3.3314 0.0152 7 6 5.1980 2.5800 1.2420 8 1 5.2044 1.7634 1.9487 9 6 5.9823 3.6917 1.4658 10 7 5.9748 4.6858 0.6049 11 14 7.0566 3.7850 2.9911 12 1 6.8861 2.5470 3.7932 13 1 8.4790 3.9216 2.5872 14 1 6.6582 4.9609 3.8059 15 6 5.2111 2.5933 -1.2377 16 6 5.0966 3.8561 -2.0939 17 6 4.5139 2.5343 -2.5983 18 6 4.2759 0.0023 -0.0010 19 6 3.5893 -1.1972 -0.0063 20 17 4.4620 -2.6979 -0.0130 21 6 2.2008 -1.2006 -0.0059 22 8 1.5229 -2.3787 -0.0111 23 1 -0.3633 -0.0050 1.0277 24 1 -0.3633 -0.8875 -0.5182 25 1 -0.3633 0.8925 -0.5095 26 1 1.6582 2.1317 0.0004 27 1 6.5268 5.4678 0.7622 28 1 6.1935 2.1283 -1.1550 29 1 4.3944 4.6233 -1.7678 30 1 6.0037 4.2222 -2.5746 31 1 5.0379 2.0308 -3.4108 32 1 3.4287 2.4318 -2.6037 33 1 5.3559 0.0060 -0.0010 34 1 1.3263 -2.7154 -0.8960 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260366052.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:49 Heat of formation + Delta-G solvation = -30.527288 kcal Electronic energy + Delta-G solvation = -17968.302914 eV Core-core repulsion = 15084.744358 eV Total energy + Delta-G solvation = -2883.558556 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 3.79 seconds Orbital eigenvalues (eV) -40.98710 -38.80086 -37.45270 -37.07478 -34.66741 -33.50272 -31.87620 -28.89139 -27.54376 -25.30408 -23.24167 -22.87371 -22.40115 -20.53780 -19.28648 -18.47359 -16.98819 -16.95958 -16.47327 -16.28012 -15.77289 -14.96869 -14.67970 -14.44005 -14.04136 -13.91727 -13.53815 -13.42151 -13.06079 -12.92731 -12.87802 -12.57883 -12.28727 -12.13486 -12.04844 -11.79247 -11.59527 -11.55966 -11.33364 -10.64116 -10.53766 -10.21193 -9.52788 -9.20840 -8.05195 -6.17564 0.24852 0.37052 1.19145 1.39354 1.43839 1.53038 2.43554 2.69908 3.20854 3.26039 3.38197 3.88903 4.08221 4.27346 4.38976 4.46130 4.50225 4.58099 4.64978 4.84081 4.90729 4.93098 4.94884 5.07863 5.27157 5.32136 5.35068 5.50349 5.52058 5.53915 5.65906 5.83614 5.90612 6.03949 6.36276 6.82858 6.89071 7.48865 8.98608 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018251 B = 0.006626 C = 0.006049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.789730 B = 4224.602852 C = 4627.948651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.097 4.097 3 C -0.119 4.119 4 C -0.037 4.037 5 C 0.112 3.888 6 H 0.014 0.986 7 C -0.529 4.529 8 H 0.046 0.954 9 C 0.028 3.972 10 N -0.892 5.892 11 Si 0.940 3.060 12 H -0.275 1.275 13 H -0.282 1.282 14 H -0.281 1.281 15 C -0.100 4.100 16 C -0.141 4.141 17 C -0.190 4.190 18 C -0.102 4.102 19 C -0.064 4.064 20 Cl -0.067 7.067 21 C 0.090 3.910 22 O -0.487 6.487 23 H 0.074 0.926 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.132 0.868 27 H 0.259 0.741 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.119 0.881 34 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.473 -9.527 -5.154 13.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.098 4.098 3 C -0.137 4.137 4 C -0.037 4.037 5 C 0.094 3.906 6 H 0.032 0.968 7 C -0.568 4.568 8 H 0.064 0.936 9 C -0.173 4.173 10 N -0.529 5.529 11 Si 0.767 3.233 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.207 1.207 15 C -0.119 4.119 16 C -0.178 4.178 17 C -0.227 4.227 18 C -0.121 4.121 19 C -0.091 4.091 20 Cl -0.039 7.039 21 C 0.045 3.955 22 O -0.299 6.299 23 H 0.092 0.908 24 H 0.102 0.898 25 H 0.098 0.902 26 H 0.150 0.850 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.137 0.863 34 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -8.293 -9.442 -4.588 13.379 hybrid contribution 1.247 0.293 0.460 1.361 sum -7.047 -9.149 -4.128 12.264 Atomic orbital electron populations 1.20681 0.87896 1.03934 1.03119 1.20332 0.98228 0.90910 1.00343 1.21135 0.93246 0.98120 1.01234 1.20290 0.93795 0.95591 0.94065 1.17313 0.92342 0.88570 0.92408 0.96789 1.21269 1.25678 1.03057 1.06748 0.93613 1.25528 0.97743 0.95577 0.98457 1.70114 1.39868 1.07020 1.35894 0.85779 0.78989 0.77787 0.80721 1.19947 1.20794 1.20743 1.21963 0.98386 1.01083 0.90496 1.22356 1.01178 0.90975 1.03287 1.23058 0.99732 1.01789 0.98158 1.20731 1.00190 0.90125 1.01037 1.21441 0.92058 0.87400 1.08186 1.98319 1.76352 1.32143 1.97041 1.17825 0.87178 0.86267 1.04257 1.84806 1.75573 1.34828 1.34688 0.90760 0.89786 0.90247 0.85030 0.93193 0.91850 0.91048 0.90883 0.88900 0.89469 0.86346 0.73918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.10 9.79 71.24 0.70 -1.40 16 2 C -0.10 -2.85 5.89 -19.77 -0.12 -2.97 16 3 C -0.12 -4.13 9.32 22.26 0.21 -3.93 16 4 C -0.04 -1.50 4.39 -19.85 -0.09 -1.59 16 5 C 0.11 5.30 2.10 -12.29 -0.03 5.28 16 6 H 0.01 0.72 7.63 -2.38 -0.02 0.70 16 7 C -0.53 -28.14 8.22 25.60 0.21 -27.93 16 8 H 0.05 2.49 7.60 -2.91 -0.02 2.47 16 9 C 0.03 1.51 5.30 84.66 0.45 1.96 16 10 N -0.89 -48.53 11.44 21.45 0.25 -48.29 16 11 Si 0.94 43.06 29.54 68.60 2.03 45.09 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 13 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 14 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 15 C -0.10 -4.50 3.87 -10.79 -0.04 -4.54 16 16 C -0.14 -5.95 9.05 30.59 0.28 -5.67 16 17 C -0.19 -7.01 9.87 30.60 0.30 -6.71 16 18 C -0.10 -3.98 8.60 22.28 0.19 -3.79 16 19 C -0.06 -2.16 6.33 22.41 0.14 -2.02 16 20 Cl -0.07 -2.04 28.51 -2.72 -0.08 -2.12 16 21 C 0.09 2.72 6.67 22.52 0.15 2.87 16 22 O -0.49 -11.83 12.01 -92.72 -1.11 -12.94 16 23 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.08 1.43 7.53 -2.39 -0.02 1.41 16 25 H 0.08 1.46 8.08 -2.38 -0.02 1.44 16 26 H 0.13 4.28 7.94 -2.91 -0.02 4.26 16 27 H 0.26 13.56 8.31 -92.70 -0.77 12.79 16 28 H 0.06 3.06 8.11 -2.39 -0.02 3.04 16 29 H 0.07 3.20 8.05 -2.39 -0.02 3.19 16 30 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 31 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 32 H 0.09 3.04 8.14 -2.38 -0.02 3.02 16 33 H 0.12 4.91 8.05 -2.91 -0.02 4.89 16 34 H 0.40 5.94 9.06 -74.06 -0.67 5.27 16 Total: -1.00 -58.43 305.14 3.87 -54.56 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.44 Total: 14.15 kcal Atomic # 6 Polarization: -52.80 SS G_CDS: 2.36 Total: -50.44 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: 0.25 Total: -48.29 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -1.11 Total: -12.94 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -0.08 Total: -2.12 kcal Total: -58.43 3.87 -54.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260366052.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.030 kcal (2) G-P(sol) polarization free energy of solvation -58.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.79 seconds