Wall clock time and date at job start Mon Mar 30 2020 06:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38283 * 119.94101 * 2 1 4 4 C 1.38217 * 120.04438 * 180.02562 * 3 2 1 5 5 Cl 1.73597 * 120.03855 * 179.97438 * 4 3 2 6 6 C 1.38851 * 119.92161 * 359.97438 * 4 3 2 7 7 O 1.35925 * 120.05820 * 179.97438 * 6 4 3 8 8 C 1.38671 * 119.88184 * 359.97438 * 6 4 3 9 9 C 1.50705 * 120.02009 * 180.02562 * 8 6 4 10 10 C 1.50692 * 115.54749 * 264.28026 * 9 8 6 11 11 H 1.07997 * 120.00454 * 279.57150 * 10 9 8 12 12 C 1.37880 * 119.99612 * 99.57757 * 10 9 8 13 13 N 1.31510 * 120.00314 * 355.30951 * 12 10 9 14 14 Si 1.86802 * 119.99839 * 175.04121 * 12 10 9 15 15 H 1.48497 * 109.47485 * 89.99573 * 14 12 10 16 16 H 1.48507 * 109.46981 * 210.00009 * 14 12 10 17 17 H 1.48509 * 109.47110 * 329.99250 * 14 12 10 18 18 C 1.53001 * 117.51859 * 49.98596 * 9 8 6 19 19 C 1.53000 * 60.00156 * 107.47570 * 18 9 8 20 20 C 1.38189 * 119.95373 * 0.27464 * 8 6 4 21 21 C 1.50706 * 119.95958 * 179.70438 * 20 8 6 22 22 H 1.09000 * 109.47204 * 89.99710 * 1 2 3 23 23 H 1.09007 * 109.46832 * 209.99559 * 1 2 3 24 24 H 1.08993 * 109.47118 * 329.99596 * 1 2 3 25 25 H 1.08001 * 119.97883 * 0.02909 * 3 2 1 26 26 H 0.96698 * 113.99840 * 270.01882 * 7 6 4 27 27 H 0.96999 * 119.99931 * 4.86866 * 13 12 10 28 28 H 1.08996 * 117.49989 * 214.97257 * 18 9 8 29 29 H 1.09002 * 117.49486 * 359.97438 * 18 9 8 30 30 H 1.08996 * 117.50001 * 252.51186 * 19 18 9 31 31 H 1.08999 * 117.49610 * 107.47971 * 19 18 9 32 32 H 1.08996 * 109.47407 * 94.95887 * 21 20 8 33 33 H 1.09000 * 109.47140 * 214.96013 * 21 20 8 34 34 H 1.09001 * 109.46833 * 334.95686 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5794 1.2008 -0.0005 5 17 4.4457 2.7051 -0.0012 6 6 4.2742 -0.0014 -0.0005 7 8 5.6334 -0.0022 -0.0016 8 6 3.5788 -1.2012 0.0005 9 6 4.3298 -2.5078 0.0011 10 6 4.5356 -3.1397 -1.3513 11 1 3.7381 -3.7051 -1.8103 12 6 5.7423 -2.9961 -2.0028 13 7 6.6809 -2.2324 -1.4879 14 14 6.0467 -3.8925 -3.6132 15 1 5.6156 -3.0349 -4.7463 16 1 7.4944 -4.1960 -3.7448 17 1 5.2721 -5.1595 -3.6286 18 6 5.4389 -2.6853 1.0401 19 6 4.1187 -3.4433 1.1933 20 6 2.1970 -1.1979 -0.0041 21 6 1.4412 -2.5017 -0.0097 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 1.6559 2.1328 0.0005 26 1 6.0260 -0.0025 -0.8853 27 1 6.5520 -1.8266 -0.6163 28 1 6.3175 -3.2591 0.7453 29 1 5.6258 -1.8567 1.7231 30 1 3.4371 -3.1135 1.9773 31 1 4.1288 -4.5158 0.9992 32 1 1.1787 -2.7739 1.0126 33 1 0.5323 -2.3923 -0.6014 34 1 2.0660 -3.2819 -0.4444 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260368999.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:41 Heat of formation + Delta-G solvation = -28.928655 kcal Electronic energy + Delta-G solvation = -18691.460398 eV Core-core repulsion = 15807.971164 eV Total energy + Delta-G solvation = -2883.489234 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.33354 -38.33691 -38.03733 -37.25455 -33.90533 -33.19963 -32.25400 -28.39578 -27.24153 -26.79229 -24.01440 -23.10260 -21.94546 -20.91462 -19.38504 -18.27156 -17.33591 -16.76572 -16.29632 -15.61849 -15.45215 -15.24472 -14.62171 -14.49449 -14.27675 -13.84660 -13.58645 -13.41266 -13.35794 -12.95105 -12.68414 -12.54940 -12.40462 -12.17002 -11.95375 -11.92004 -11.80386 -11.78458 -11.12530 -10.71672 -10.39241 -10.23458 -9.34815 -9.20684 -8.41318 -6.24375 0.16644 0.34628 1.15375 1.55866 1.62649 1.79906 2.49876 2.61532 3.20392 3.29074 3.41326 3.83622 3.94651 4.23177 4.27636 4.36518 4.43486 4.53557 4.65142 4.79042 4.83654 4.85800 4.90809 4.92005 5.04152 5.15924 5.24503 5.30485 5.38333 5.45620 5.55669 5.74593 5.96112 6.17610 6.32098 6.72010 6.81111 7.58037 8.97638 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.017217 B = 0.008780 C = 0.007201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.868249 B = 3188.247112 C = 3887.156312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.087 4.087 3 C -0.115 4.115 4 C -0.077 4.077 5 Cl -0.069 7.069 6 C 0.087 3.913 7 O -0.491 6.491 8 C -0.054 4.054 9 C 0.047 3.953 10 C -0.576 4.576 11 H 0.050 0.950 12 C -0.014 4.014 13 N -0.939 5.939 14 Si 1.108 2.892 15 H -0.280 1.280 16 H -0.288 1.288 17 H -0.275 1.275 18 C -0.169 4.169 19 C -0.171 4.171 20 C -0.078 4.078 21 C -0.107 4.107 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.157 0.843 26 H 0.387 0.613 27 H 0.290 0.710 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.590 4.750 2.353 12.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.088 4.088 3 C -0.133 4.133 4 C -0.104 4.104 5 Cl -0.040 7.040 6 C 0.041 3.959 7 O -0.303 6.303 8 C -0.056 4.056 9 C 0.046 3.954 10 C -0.613 4.613 11 H 0.068 0.932 12 C -0.215 4.215 13 N -0.580 5.580 14 Si 0.932 3.068 15 H -0.206 1.206 16 H -0.214 1.214 17 H -0.200 1.200 18 C -0.206 4.206 19 C -0.208 4.208 20 C -0.078 4.078 21 C -0.163 4.163 22 H 0.100 0.900 23 H 0.099 0.901 24 H 0.103 0.897 25 H 0.175 0.825 26 H 0.245 0.755 27 H 0.106 0.894 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.468 4.708 1.770 11.614 hybrid contribution -0.063 0.398 0.738 0.841 sum -10.531 5.106 2.508 11.969 Atomic orbital electron populations 1.20833 0.87568 1.04226 1.03479 1.20068 0.98189 0.90750 0.99749 1.20968 0.90338 0.99719 1.02323 1.21467 0.93575 0.85907 1.09425 1.98309 1.77552 1.31018 1.97109 1.18354 0.83863 0.90901 1.02793 1.84726 1.15645 1.95978 1.33904 1.20164 0.94087 0.94064 0.97248 1.17621 0.96894 0.90325 0.90562 1.21513 1.01054 1.35658 1.03115 0.93227 1.26892 0.92616 0.95898 1.06129 1.70748 1.37156 1.29459 1.20636 0.83034 0.75871 0.75632 0.72275 1.20602 1.21417 1.19971 1.22535 0.92653 1.01887 1.03555 1.23038 0.98928 0.97718 1.01103 1.19877 0.91838 0.96839 0.99241 1.20822 0.99602 0.93285 1.02637 0.89955 0.90108 0.89680 0.82517 0.75503 0.89374 0.91903 0.91379 0.89520 0.89802 0.90242 0.89634 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.08 9.21 71.24 0.66 -1.42 16 2 C -0.09 -2.62 5.88 -19.85 -0.12 -2.74 16 3 C -0.11 -3.57 9.48 22.28 0.21 -3.36 16 4 C -0.08 -2.86 6.33 22.41 0.14 -2.72 16 5 Cl -0.07 -2.31 28.51 -2.72 -0.08 -2.39 16 6 C 0.09 3.81 6.56 22.52 0.15 3.96 16 7 O -0.49 -23.11 9.65 -92.71 -0.89 -24.01 16 8 C -0.05 -2.40 5.00 -19.77 -0.10 -2.50 16 9 C 0.05 2.22 0.37 -53.67 -0.02 2.20 16 10 C -0.58 -30.50 8.45 25.60 0.22 -30.28 16 11 H 0.05 2.63 7.34 -2.91 -0.02 2.60 16 12 C -0.01 -0.75 5.30 84.66 0.45 -0.30 16 13 N -0.94 -53.20 12.43 21.45 0.27 -52.93 16 14 Si 1.11 48.67 29.91 68.60 2.05 50.72 16 15 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 16 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 18 C -0.17 -8.19 6.96 30.59 0.21 -7.97 16 19 C -0.17 -7.29 8.57 30.60 0.26 -7.03 16 20 C -0.08 -2.82 5.86 -19.87 -0.12 -2.94 16 21 C -0.11 -3.33 7.99 71.24 0.57 -2.76 16 22 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.08 1.44 6.80 -2.38 -0.02 1.42 16 24 H 0.08 1.34 8.08 -2.39 -0.02 1.32 16 25 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 26 H 0.39 18.75 7.63 -74.06 -0.57 18.19 16 27 H 0.29 16.19 3.02 -92.71 -0.28 15.91 16 28 H 0.06 3.33 7.34 -2.39 -0.02 3.31 16 29 H 0.07 3.30 7.69 -2.39 -0.02 3.28 16 30 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 31 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.08 2.14 7.00 -2.39 -0.02 2.13 16 34 H 0.06 2.21 5.64 -2.39 -0.01 2.20 16 Total: -1.00 -60.65 288.94 4.91 -55.74 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 1.05 Total: 30.72 kcal Atomic # 6 Polarization: -60.37 SS G_CDS: 2.51 Total: -57.86 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.27 Total: -52.93 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.89 Total: -24.01 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 2.05 Total: 50.72 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -0.08 Total: -2.39 kcal Total: -60.65 4.91 -55.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260368999.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.810 kcal (2) G-P(sol) polarization free energy of solvation -60.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds