Wall clock time and date at job start Mon Mar 30 2020 06:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76199 * 102.99985 * 2 1 4 4 C 1.39185 * 120.05158 * 269.99885 * 3 2 1 5 5 C 1.38988 * 119.80137 * 180.02562 * 4 3 2 6 6 C 1.38748 * 119.87325 * 359.97438 * 5 4 3 7 7 C 1.38204 * 120.17803 * 0.02562 * 6 5 4 8 8 C 1.38215 * 120.20433 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.97699 * 179.70102 * 8 7 6 10 10 C 1.52999 * 109.47109 * 264.99679 * 9 8 7 11 11 C 1.50699 * 109.47109 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99771 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00035 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00040 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99881 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47144 * 90.00356 * 15 13 11 17 17 H 1.48504 * 109.46837 * 209.99770 * 15 13 11 18 18 H 1.48495 * 109.47440 * 329.99804 * 15 13 11 19 19 O 1.36529 * 108.67289 * 179.97438 * 5 4 3 20 20 C 1.43995 * 105.49862 * 342.72437 * 19 5 4 21 21 O 1.36611 * 131.51477 * 359.97438 * 4 3 2 22 22 H 1.09002 * 109.47079 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.46833 * 299.99814 * 1 2 3 24 24 H 1.09001 * 109.47584 * 60.00089 * 1 2 3 25 25 H 1.08005 * 119.91425 * 180.02562 * 6 5 4 26 26 H 1.08004 * 119.90266 * 179.97438 * 7 6 5 27 27 H 1.08993 * 109.47152 * 25.00306 * 9 8 7 28 28 H 1.09005 * 109.46915 * 144.99852 * 9 8 7 29 29 H 1.09000 * 109.47351 * 300.00605 * 10 9 8 30 30 H 1.09000 * 109.46670 * 60.00418 * 10 9 8 31 31 H 0.97005 * 120.00017 * 179.97438 * 14 13 11 32 32 H 1.08999 * 110.57626 * 268.53920 * 20 19 5 33 33 H 1.08998 * 110.58154 * 145.64180 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 2.3671 2.3960 -1.2048 5 6 2.6803 3.7501 -1.1987 6 6 2.8345 4.4183 0.0074 7 6 2.6781 3.7410 1.2019 8 6 2.3677 2.3941 1.2021 9 6 2.2050 1.6591 2.5075 10 6 3.5254 0.9815 2.8793 11 6 3.3625 0.2459 4.1844 12 1 2.4121 0.2599 4.6972 13 6 4.4267 -0.4450 4.7239 14 7 4.2847 -1.0865 5.8631 15 14 6.0707 -0.4686 3.8373 16 1 6.8989 0.6740 4.2996 17 1 6.7748 -1.7421 4.1339 18 1 5.8456 -0.3567 2.3738 19 8 2.7804 4.1814 -2.4902 20 6 2.9277 2.9889 -3.2838 21 8 2.2704 1.9750 -2.5008 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 3.0775 5.4707 0.0129 26 1 2.7996 4.2655 2.1382 27 1 1.9260 2.3650 3.2896 28 1 1.4255 0.9041 2.4046 29 1 3.8045 0.2755 2.0971 30 1 4.3048 1.7365 2.9822 31 1 5.0333 -1.5729 6.2424 32 1 3.9818 2.7459 -3.4180 33 1 2.4349 3.1075 -4.2487 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260369006.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:06 Heat of formation + Delta-G solvation = -40.148532 kcal Electronic energy + Delta-G solvation = -17814.993120 eV Core-core repulsion = 14933.061062 eV Total energy + Delta-G solvation = -2881.932058 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.15545 -38.21265 -36.29576 -33.89356 -31.95726 -30.52338 -29.12296 -28.61477 -26.16066 -24.94430 -23.10074 -22.20900 -20.32945 -18.25068 -17.62048 -17.51879 -16.71297 -16.18995 -15.61647 -14.70070 -14.27917 -14.23913 -13.86503 -13.66556 -13.30951 -13.17624 -12.98687 -12.75861 -12.64209 -12.54650 -12.06995 -11.63461 -11.40902 -10.91352 -10.88435 -10.10902 -10.03598 -9.79895 -9.67455 -9.15713 -8.62412 -8.48370 -7.91708 -7.29369 -5.99828 -3.96887 0.92160 1.22281 1.94994 2.70403 2.85332 3.34897 3.37110 3.42771 3.49280 3.64817 4.50653 4.55122 4.61454 4.74471 5.07262 5.10948 5.28063 5.30908 5.34380 5.35643 5.39098 5.79122 5.86028 5.98023 6.04372 6.27256 6.37927 6.46555 6.65719 6.85250 7.09082 7.32039 7.50107 7.82986 8.57203 9.04689 9.63253 11.13608 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022872 B = 0.006071 C = 0.005642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.890596 B = 4610.804864 C = 4961.751778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.117 6.117 3 C -0.109 4.109 4 C 0.079 3.921 5 C 0.000 4.000 6 C -0.072 4.072 7 C -0.123 4.123 8 C -0.007 4.007 9 C -0.071 4.071 10 C -0.002 4.002 11 C -0.514 4.514 12 H 0.073 0.927 13 C 0.069 3.931 14 N -0.904 5.904 15 Si 0.873 3.127 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.264 1.264 19 O -0.312 6.312 20 C 0.211 3.789 21 O -0.298 6.298 22 H 0.103 0.897 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.136 0.864 26 H 0.145 0.855 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.027 0.973 30 H 0.009 0.991 31 H 0.262 0.738 32 H 0.083 0.917 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.041 9.059 -16.389 19.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.115 5.885 3 C -0.221 4.221 4 C 0.032 3.968 5 C -0.046 4.046 6 C -0.091 4.091 7 C -0.142 4.142 8 C -0.009 4.009 9 C -0.109 4.109 10 C -0.039 4.039 11 C -0.552 4.552 12 H 0.091 0.909 13 C -0.132 4.132 14 N -0.544 5.544 15 Si 0.701 3.299 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.188 1.188 19 O -0.229 6.229 20 C 0.099 3.901 21 O -0.214 6.214 22 H 0.121 0.879 23 H 0.098 0.902 24 H 0.089 0.911 25 H 0.154 0.846 26 H 0.162 0.838 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.045 0.955 30 H 0.027 0.973 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.398 8.009 -16.479 18.843 hybrid contribution 0.289 1.079 -0.715 1.326 sum -4.109 9.088 -17.194 19.877 Atomic orbital electron populations 1.23588 0.95995 1.06312 1.04816 1.85721 1.05279 1.00352 1.97146 1.20524 1.12391 0.98597 0.90545 1.19769 0.99970 0.91703 0.85387 1.19653 1.07152 0.91903 0.85855 1.20208 1.00210 1.00545 0.88089 1.20961 1.01921 0.93900 0.97443 1.20621 0.91957 0.93260 0.95109 1.20797 1.01987 0.98580 0.89527 1.19539 0.91326 0.95408 0.97643 1.21062 0.99244 1.30470 1.04396 0.90900 1.24952 0.98654 0.94944 0.94636 1.69906 1.31828 1.33846 1.18789 0.86865 0.84443 0.77427 0.81189 1.20412 1.21373 1.18803 1.87327 1.90398 1.30723 1.14438 1.25611 0.98685 0.72610 0.93166 1.87438 1.74316 1.45440 1.14191 0.87882 0.90200 0.91054 0.84638 0.83755 0.91205 0.90228 0.95492 0.97255 0.92801 0.89986 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 10.72 101.05 1.08 -0.78 16 2 S -0.12 -2.04 20.18 -107.50 -2.17 -4.21 16 3 C -0.11 -1.90 5.70 -39.00 -0.22 -2.12 16 4 C 0.08 1.29 6.89 -38.95 -0.27 1.02 16 5 C 0.00 0.00 7.15 -39.12 -0.28 -0.28 16 6 C -0.07 -0.97 10.06 -39.41 -0.40 -1.36 16 7 C -0.12 -1.79 9.67 -39.60 -0.38 -2.17 16 8 C -0.01 -0.12 5.15 -104.40 -0.54 -0.65 16 9 C -0.07 -1.39 4.74 -27.88 -0.13 -1.52 16 10 C 0.00 -0.04 4.02 -27.88 -0.11 -0.15 16 11 C -0.51 -14.45 9.66 -34.44 -0.33 -14.79 16 12 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 13 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 14 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 15 Si 0.87 22.05 27.47 -169.99 -4.67 17.38 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 18 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 19 O -0.31 -4.17 11.40 -45.79 -0.52 -4.69 16 20 C 0.21 2.27 8.89 101.05 0.90 3.17 16 21 O -0.30 -4.39 11.40 -46.06 -0.53 -4.91 16 22 H 0.10 1.19 8.14 -51.92 -0.42 0.77 16 23 H 0.08 1.04 8.05 -51.92 -0.42 0.62 16 24 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 25 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16 26 H 0.14 1.80 8.06 -52.48 -0.42 1.38 16 27 H 0.07 1.28 8.05 -51.93 -0.42 0.86 16 28 H 0.08 1.55 6.92 -51.93 -0.36 1.20 16 29 H 0.03 0.67 6.77 -51.93 -0.35 0.32 16 30 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 295.63 15.07 4.46 4.46 Total: -1.00 -32.48 295.63 -7.50 -39.98 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: -4.06 Total: -3.18 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -0.78 Total: -17.72 kcal Atomic # 7 Polarization: -27.88 SS G_CDS: 0.77 Total: -27.10 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -1.05 Total: -9.60 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Atomic # 16 Polarization: -2.04 SS G_CDS: -2.17 Total: -4.21 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.48 -7.50 -39.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260369006.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.173 kcal (2) G-P(sol) polarization free energy of solvation -32.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds