Wall clock time and date at job start Mon Mar 30 2020 06:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76199 * 102.99985 * 2 1 4 4 C 1.39185 * 120.05158 * 269.99885 * 3 2 1 5 5 C 1.38988 * 119.80137 * 180.02562 * 4 3 2 6 6 C 1.38748 * 119.87325 * 359.97438 * 5 4 3 7 7 C 1.38204 * 120.17803 * 0.02562 * 6 5 4 8 8 C 1.38215 * 120.20433 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.97699 * 179.70102 * 8 7 6 10 10 C 1.52999 * 109.47109 * 264.99679 * 9 8 7 11 11 C 1.50699 * 109.47109 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99771 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00035 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00040 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99881 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47144 * 90.00356 * 15 13 11 17 17 H 1.48504 * 109.46837 * 209.99770 * 15 13 11 18 18 H 1.48495 * 109.47440 * 329.99804 * 15 13 11 19 19 O 1.36529 * 108.67289 * 179.97438 * 5 4 3 20 20 C 1.43995 * 105.49862 * 342.72437 * 19 5 4 21 21 O 1.36611 * 131.51477 * 359.97438 * 4 3 2 22 22 H 1.09002 * 109.47079 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.46833 * 299.99814 * 1 2 3 24 24 H 1.09001 * 109.47584 * 60.00089 * 1 2 3 25 25 H 1.08005 * 119.91425 * 180.02562 * 6 5 4 26 26 H 1.08004 * 119.90266 * 179.97438 * 7 6 5 27 27 H 1.08993 * 109.47152 * 25.00306 * 9 8 7 28 28 H 1.09005 * 109.46915 * 144.99852 * 9 8 7 29 29 H 1.09000 * 109.47351 * 300.00605 * 10 9 8 30 30 H 1.09000 * 109.46670 * 60.00418 * 10 9 8 31 31 H 0.97005 * 120.00017 * 179.97438 * 14 13 11 32 32 H 1.08999 * 110.57626 * 268.53920 * 20 19 5 33 33 H 1.08998 * 110.58154 * 145.64180 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 2.3671 2.3960 -1.2048 5 6 2.6803 3.7501 -1.1987 6 6 2.8345 4.4183 0.0074 7 6 2.6781 3.7410 1.2019 8 6 2.3677 2.3941 1.2021 9 6 2.2050 1.6591 2.5075 10 6 3.5254 0.9815 2.8793 11 6 3.3625 0.2459 4.1844 12 1 2.4121 0.2599 4.6972 13 6 4.4267 -0.4450 4.7239 14 7 4.2847 -1.0865 5.8631 15 14 6.0707 -0.4686 3.8373 16 1 6.8989 0.6740 4.2996 17 1 6.7748 -1.7421 4.1339 18 1 5.8456 -0.3567 2.3738 19 8 2.7804 4.1814 -2.4902 20 6 2.9277 2.9889 -3.2838 21 8 2.2704 1.9750 -2.5008 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 3.0775 5.4707 0.0129 26 1 2.7996 4.2655 2.1382 27 1 1.9260 2.3650 3.2896 28 1 1.4255 0.9041 2.4046 29 1 3.8045 0.2755 2.0971 30 1 4.3048 1.7365 2.9822 31 1 5.0333 -1.5729 6.2424 32 1 3.9818 2.7459 -3.4180 33 1 2.4349 3.1075 -4.2487 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260369006.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:05 Heat of formation + Delta-G solvation = -60.077064 kcal Electronic energy + Delta-G solvation = -17815.857286 eV Core-core repulsion = 14933.061062 eV Total energy + Delta-G solvation = -2882.796224 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.076 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.19135 -39.40561 -37.32910 -35.69617 -33.82770 -31.68824 -30.64500 -29.71274 -27.42562 -26.30381 -24.23317 -23.68948 -21.99655 -19.34861 -19.11177 -18.57160 -18.40117 -17.37376 -16.72445 -16.34471 -15.84295 -15.33837 -15.07505 -14.93039 -14.77567 -14.36576 -14.33415 -14.23266 -14.00850 -13.66397 -13.61306 -13.09963 -12.87443 -12.60907 -12.28880 -11.82047 -11.59836 -11.42193 -11.38193 -11.18998 -10.70815 -9.79925 -9.06661 -8.63747 -8.24721 -6.25997 -0.22188 0.05555 0.72180 1.34736 1.38330 1.50194 1.66682 1.70047 2.38838 2.44280 2.48059 3.11740 3.49683 3.77513 3.84085 4.01169 4.09118 4.15065 4.27099 4.30556 4.37706 4.62262 4.66680 4.74457 4.81810 4.86223 5.06779 5.13935 5.29405 5.35231 5.50993 5.68873 5.72514 6.01447 6.33652 6.80579 7.37614 8.91982 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022872 B = 0.006071 C = 0.005642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.890596 B = 4610.804864 C = 4961.751778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.182 6.182 3 C -0.116 4.116 4 C 0.064 3.936 5 C 0.002 3.998 6 C -0.064 4.064 7 C -0.115 4.115 8 C -0.030 4.030 9 C -0.060 4.060 10 C 0.005 3.995 11 C -0.517 4.517 12 H 0.040 0.960 13 C 0.011 3.989 14 N -0.950 5.950 15 Si 0.937 3.063 16 H -0.264 1.264 17 H -0.285 1.285 18 H -0.257 1.257 19 O -0.315 6.315 20 C 0.202 3.798 21 O -0.315 6.315 22 H 0.120 0.880 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.171 0.829 26 H 0.167 0.833 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.016 0.984 30 H 0.015 0.985 31 H 0.265 0.735 32 H 0.100 0.900 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.461 11.037 -18.442 21.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S 0.050 5.950 3 C -0.228 4.228 4 C 0.016 3.984 5 C -0.044 4.044 6 C -0.083 4.083 7 C -0.135 4.135 8 C -0.033 4.033 9 C -0.098 4.098 10 C -0.032 4.032 11 C -0.556 4.556 12 H 0.058 0.942 13 C -0.186 4.186 14 N -0.591 5.591 15 Si 0.762 3.238 16 H -0.189 1.189 17 H -0.210 1.210 18 H -0.181 1.181 19 O -0.232 6.232 20 C 0.092 3.908 21 O -0.231 6.231 22 H 0.138 0.862 23 H 0.099 0.901 24 H 0.101 0.899 25 H 0.189 0.811 26 H 0.184 0.816 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.034 0.966 30 H 0.033 0.967 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.824 10.002 -18.554 21.422 hybrid contribution 0.011 0.486 -0.152 0.509 sum -3.813 10.488 -18.706 21.782 Atomic orbital electron populations 1.23591 0.92270 1.07636 1.05383 1.85794 1.09488 1.02384 1.97322 1.20503 1.13211 0.97731 0.91379 1.19829 1.00498 0.92408 0.85624 1.19918 1.06120 0.91409 0.86904 1.20553 0.98696 1.02038 0.86987 1.21212 1.00478 0.92770 0.99012 1.20376 0.94765 0.94444 0.93717 1.20507 0.99310 0.98530 0.91415 1.19392 0.93989 0.95081 0.94778 1.21399 0.97840 1.30478 1.05836 0.94178 1.25818 1.02661 0.94747 0.95373 1.70046 1.33173 1.35286 1.20628 0.85845 0.79898 0.77933 0.80167 1.18863 1.21034 1.18089 1.87320 1.90250 1.31789 1.13845 1.26170 1.00164 0.70947 0.93533 1.87411 1.74864 1.46934 1.13856 0.86189 0.90087 0.89900 0.81120 0.81576 0.90447 0.91204 0.96566 0.96674 0.92631 0.88291 0.81488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.17 10.72 113.37 1.21 -1.95 16 2 S -0.18 -6.39 20.18 -56.49 -1.14 -7.53 16 3 C -0.12 -3.98 5.70 22.65 0.13 -3.85 16 4 C 0.06 1.98 6.89 22.68 0.16 2.14 16 5 C 0.00 0.06 7.15 22.57 0.16 0.22 16 6 C -0.06 -1.51 10.06 22.38 0.23 -1.28 16 7 C -0.12 -3.06 9.67 22.26 0.22 -2.84 16 8 C -0.03 -1.01 5.15 -19.72 -0.10 -1.11 16 9 C -0.06 -2.33 4.74 29.85 0.14 -2.19 16 10 C 0.01 0.24 4.02 29.85 0.12 0.36 16 11 C -0.52 -29.77 9.66 25.60 0.25 -29.52 16 12 H 0.04 2.50 7.99 -2.91 -0.02 2.47 16 13 C 0.01 0.63 5.47 84.65 0.46 1.09 16 14 N -0.95 -59.91 13.96 21.44 0.30 -59.61 16 15 Si 0.94 45.57 27.47 68.60 1.88 47.45 16 16 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 18 H -0.26 -12.11 6.54 99.48 0.65 -11.46 16 19 O -0.32 -7.41 11.40 -76.39 -0.87 -8.28 16 20 C 0.20 3.75 8.89 113.37 1.01 4.76 16 21 O -0.31 -8.71 11.40 -77.35 -0.88 -9.59 16 22 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 23 H 0.08 2.08 8.05 -2.39 -0.02 2.07 16 24 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 26 H 0.17 3.59 8.06 -2.91 -0.02 3.57 16 27 H 0.08 2.81 8.05 -2.39 -0.02 2.79 16 28 H 0.07 2.79 6.92 -2.38 -0.02 2.78 16 29 H 0.02 0.80 6.77 -2.39 -0.02 0.79 16 30 H 0.01 0.69 7.57 -2.39 -0.02 0.68 16 31 H 0.26 15.63 8.31 -92.70 -0.77 14.86 16 32 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.17 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -71.34 295.63 4.33 -67.02 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: 1.06 Total: 4.72 kcal Atomic # 6 Polarization: -38.15 SS G_CDS: 3.98 Total: -34.17 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: 0.30 Total: -59.61 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -1.75 Total: -17.88 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.88 Total: 47.45 kcal Atomic # 16 Polarization: -6.39 SS G_CDS: -1.14 Total: -7.53 kcal Total: -71.34 4.33 -67.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260369006.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.939 kcal (2) G-P(sol) polarization free energy of solvation -71.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds