Wall clock time and date at job start Mon Mar 30 2020 08:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00113 * 2 1 4 4 H 1.48500 * 109.46991 * 240.00708 * 3 2 1 5 5 H 1.48502 * 109.46928 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46986 * 120.00610 * 3 2 1 7 7 C 1.37875 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00113 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.52030 * 299.87160 * 9 7 2 11 11 C 1.53118 * 109.52135 * 59.99931 * 9 7 2 12 12 C 1.53031 * 109.27760 * 62.25400 * 11 9 7 13 13 N 1.46853 * 109.52787 * 59.17789 * 12 11 9 14 14 C 1.46849 * 111.19233 * 298.25866 * 13 12 11 15 15 H 1.08999 * 109.46055 * 301.73154 * 14 13 12 16 16 C 1.50708 * 109.45662 * 181.75354 * 14 13 12 17 17 C 1.38158 * 120.42997 * 339.95498 * 16 14 13 18 18 N 1.31878 * 120.77676 * 180.02562 * 17 16 14 19 19 C 1.31902 * 121.76149 * 0.02562 * 18 17 16 20 20 C 1.38122 * 120.77833 * 0.02562 * 19 18 17 21 21 C 1.38773 * 120.42319 * 159.99625 * 16 14 13 22 22 Cl 1.73606 * 120.80752 * 0.25936 * 21 16 14 23 23 C 1.53031 * 109.52599 * 61.74125 * 14 13 12 24 24 H 0.97003 * 120.00019 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.50557 * 302.30951 * 11 9 7 26 26 H 1.09002 * 109.53274 * 182.21239 * 11 9 7 27 27 H 1.08993 * 109.46441 * 299.15874 * 12 11 9 28 28 H 1.09007 * 109.46408 * 179.18986 * 12 11 9 29 29 H 1.00903 * 110.99419 * 62.35025 * 13 12 11 30 30 H 1.08004 * 119.61525 * 0.02562 * 17 16 14 31 31 H 1.07997 * 119.61177 * 179.97438 * 19 18 17 32 32 H 1.07995 * 120.43050 * 179.97438 * 20 19 18 33 33 H 1.09002 * 109.50599 * 60.75734 * 23 14 13 34 34 H 1.09001 * 109.50470 * 180.87584 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6261 -2.5590 0.8905 11 6 0.3697 -2.5812 -1.2500 12 6 1.2571 -2.5566 -2.4966 13 7 2.1894 -3.6905 -2.4580 14 6 3.0779 -3.6078 -1.2917 15 1 3.6327 -2.6701 -1.3236 16 6 4.0443 -4.7640 -1.3138 17 6 3.7648 -5.8955 -2.0558 18 7 4.6053 -6.9114 -2.0796 19 6 5.7373 -6.8921 -1.4028 20 6 6.0846 -5.7960 -0.6375 21 6 5.2259 -4.7063 -0.5883 22 17 5.6166 -3.3089 0.3648 23 6 2.2450 -3.6639 -0.0091 24 1 -0.4850 0.8401 0.0004 25 1 -0.3116 -1.7307 -1.2714 26 1 -0.2048 -3.5073 -1.2306 27 1 1.8205 -1.6239 -2.5229 28 1 0.6335 -2.6293 -3.3878 29 1 1.6919 -4.5682 -2.4720 30 1 2.8473 -5.9486 -2.6230 31 1 6.4000 -7.7437 -1.4469 32 1 7.0126 -5.7863 -0.0852 33 1 1.7004 -4.6073 0.0302 34 1 2.9034 -3.5868 0.8561 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260370608.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:12:36 Heat of formation + Delta-G solvation = 5.139782 kcal Electronic energy + Delta-G solvation = -18380.889690 eV Core-core repulsion = 15531.170526 eV Total energy + Delta-G solvation = -2849.719164 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.48432 -39.53922 -37.66690 -35.23266 -33.64309 -32.76856 -32.16923 -29.99989 -27.10466 -25.39002 -24.67082 -23.45097 -22.30025 -20.95557 -18.54505 -17.98881 -17.61950 -16.96113 -16.46340 -15.54188 -15.48594 -15.21261 -15.01505 -14.76764 -14.72206 -14.02906 -13.91871 -13.44938 -13.26425 -12.92862 -12.83217 -12.59253 -12.57782 -12.27340 -11.93514 -11.75642 -11.71614 -11.02873 -10.72343 -10.51163 -10.48946 -10.39800 -10.01200 -9.09479 -8.06336 -6.16629 0.03466 0.08204 1.01864 1.39295 1.40712 1.46835 2.43061 2.72273 3.21800 3.26870 3.45203 3.76755 3.91069 4.04158 4.24488 4.37199 4.45148 4.57522 4.67062 4.69651 4.74612 4.79842 4.94593 5.05599 5.15339 5.24938 5.40586 5.55438 5.59346 5.63298 5.80331 5.97766 6.28910 6.41409 6.62129 6.92062 6.92846 7.49886 8.98142 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.024649 B = 0.007063 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.697200 B = 3963.363947 C = 4742.556393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.019 3.981 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.507 4.507 8 H 0.052 0.948 9 C 0.043 3.957 10 H -0.012 1.012 11 C -0.140 4.140 12 C 0.083 3.917 13 N -0.672 5.672 14 C 0.147 3.853 15 H 0.080 0.920 16 C -0.123 4.123 17 C 0.118 3.882 18 N -0.496 5.496 19 C 0.103 3.897 20 C -0.158 4.158 21 C -0.008 4.008 22 Cl -0.056 7.056 23 C -0.119 4.119 24 H 0.258 0.742 25 H 0.066 0.934 26 H 0.030 0.970 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.339 0.661 30 H 0.173 0.827 31 H 0.200 0.800 32 H 0.171 0.829 33 H 0.046 0.954 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.195 -11.679 -2.896 15.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.179 4.179 3 Si 0.762 3.238 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.545 4.545 8 H 0.070 0.930 9 C 0.024 3.976 10 H 0.007 0.993 11 C -0.180 4.180 12 C -0.047 4.047 13 N -0.301 5.301 14 C 0.036 3.964 15 H 0.098 0.902 16 C -0.126 4.126 17 C -0.039 4.039 18 N -0.204 5.204 19 C -0.053 4.053 20 C -0.178 4.178 21 C -0.043 4.043 22 Cl -0.027 7.027 23 C -0.158 4.158 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.158 0.842 30 H 0.190 0.810 31 H 0.217 0.783 32 H 0.189 0.811 33 H 0.065 0.935 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.325 -11.862 -3.756 16.168 hybrid contribution -0.348 2.048 1.699 2.683 sum 9.977 -9.814 -2.057 14.145 Atomic orbital electron populations 1.69977 1.06897 1.26810 1.51837 1.25542 0.95410 1.01570 0.95381 0.85956 0.78688 0.80482 0.78650 1.19754 1.21165 1.20241 1.21302 0.92652 0.91265 1.49293 0.92957 1.18655 0.92847 0.92693 0.93359 0.99341 1.22066 0.99141 0.99629 0.97127 1.21690 0.93151 0.93491 0.96319 1.60890 1.23287 1.05819 1.40145 1.20118 0.91994 0.94972 0.89274 0.90203 1.20920 0.95239 0.98265 0.98217 1.22744 0.99051 0.87030 0.95076 1.67754 1.04371 1.28184 1.20121 1.23378 0.93263 0.97810 0.90895 1.22386 1.01262 0.92388 1.01793 1.21472 0.95839 0.90864 0.96158 1.98415 1.93578 1.40791 1.69955 1.22064 0.98227 0.97870 0.97666 0.93248 0.91512 0.95170 0.92848 0.90751 0.84246 0.80974 0.78303 0.81129 0.93533 0.93199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.71 11.31 21.45 0.24 -51.47 16 2 C 0.02 1.05 5.30 84.65 0.45 1.50 16 3 Si 0.94 43.35 29.54 68.60 2.03 45.37 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.51 -26.67 6.74 25.60 0.17 -26.50 16 8 H 0.05 2.75 6.88 -2.91 -0.02 2.73 16 9 C 0.04 2.08 2.61 -11.46 -0.03 2.05 16 10 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 11 C -0.14 -6.29 5.39 30.64 0.17 -6.12 16 12 C 0.08 3.25 6.35 86.32 0.55 3.80 16 13 N -0.67 -22.88 6.04 -495.55 -3.00 -25.88 16 14 C 0.15 5.33 1.93 44.19 0.09 5.41 16 15 H 0.08 3.36 6.11 -2.39 -0.01 3.34 16 16 C -0.12 -3.78 5.10 -19.75 -0.10 -3.88 16 17 C 0.12 3.21 10.42 84.67 0.88 4.10 16 18 N -0.50 -12.52 10.36 -195.92 -2.03 -14.55 16 19 C 0.10 2.04 11.18 84.65 0.95 2.99 16 20 C -0.16 -3.33 9.94 22.38 0.22 -3.11 16 21 C -0.01 -0.23 6.37 22.54 0.14 -0.09 16 22 Cl -0.06 -1.73 26.94 -2.72 -0.07 -1.80 16 23 C -0.12 -4.77 4.77 30.64 0.15 -4.62 16 24 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 25 H 0.07 3.45 6.02 -2.39 -0.01 3.44 16 26 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.05 2.42 7.31 -2.39 -0.02 2.40 16 28 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 29 H 0.34 9.96 6.99 -89.69 -0.63 9.33 16 30 H 0.17 4.24 6.20 -2.91 -0.02 4.22 16 31 H 0.20 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 34 H 0.05 2.04 7.36 -2.39 -0.02 2.03 16 Total: -1.00 -59.74 285.45 1.30 -58.45 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.50 Total: 14.34 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: 3.63 Total: -24.46 kcal Atomic # 7 Polarization: -87.11 SS G_CDS: -4.78 Total: -91.89 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.07 Total: -1.80 kcal Total: -59.74 1.30 -58.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260370608.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.587 kcal (2) G-P(sol) polarization free energy of solvation -59.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds