Wall clock time and date at job start Mon Mar 30 2020 07:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47003 * 2 1 4 4 C 1.38163 * 120.02546 * 264.97820 * 3 2 1 5 5 C 1.38340 * 120.04692 * 180.02562 * 4 3 2 6 6 Cl 1.73606 * 119.95794 * 179.97438 * 5 4 3 7 7 C 1.38389 * 120.08218 * 359.70067 * 5 4 3 8 8 C 1.38115 * 120.04615 * 0.55023 * 7 5 4 9 9 C 1.50700 * 120.02389 * 179.74468 * 8 7 5 10 10 C 1.50706 * 115.54584 * 114.87613 * 9 8 7 11 11 H 1.07994 * 119.99977 * 99.51671 * 10 9 8 12 12 C 1.37875 * 119.99966 * 279.52019 * 10 9 8 13 13 N 1.31523 * 119.99911 * 2.43310 * 12 10 9 14 14 Si 1.86801 * 120.00054 * 182.16535 * 12 10 9 15 15 H 1.48498 * 109.47173 * 59.99586 * 14 12 10 16 16 H 1.48497 * 109.47069 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46749 * 299.99428 * 14 12 10 18 18 C 1.52999 * 117.52184 * 260.57587 * 9 8 7 19 19 C 1.52993 * 117.49952 * 329.20968 * 9 8 7 20 20 C 1.38701 * 120.02357 * 85.00314 * 3 2 1 21 21 O 1.35932 * 120.04021 * 359.97438 * 20 3 2 22 22 H 1.09006 * 109.47460 * 300.00000 * 1 2 3 23 23 H 1.08999 * 109.47506 * 59.99713 * 1 2 3 24 24 H 1.08995 * 109.47217 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47167 * 239.99730 * 2 1 3 26 26 H 1.09002 * 109.47022 * 120.00205 * 2 1 3 27 27 H 1.08006 * 119.97523 * 0.02562 * 4 3 2 28 28 H 1.08004 * 119.97514 * 180.30318 * 7 5 4 29 29 H 0.97001 * 119.99974 * 5.13967 * 13 12 10 30 30 H 1.08999 * 117.49746 * 214.97387 * 18 9 8 31 31 H 1.09000 * 117.49852 * 359.97438 * 18 9 8 32 32 H 1.09001 * 117.49919 * 359.97057 * 19 9 8 33 33 H 1.09005 * 117.49983 * 144.99790 * 19 9 8 34 34 H 0.96696 * 113.99599 * 273.02748 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3614 2.0377 -1.1916 5 6 2.8231 3.3418 -1.1921 6 17 3.2367 4.1145 -2.6907 7 6 2.9503 4.0330 0.0000 8 6 2.6272 3.4182 1.1938 9 6 2.7714 4.1695 2.4922 10 6 1.4869 4.4395 3.2328 11 1 1.1988 3.8097 4.0615 12 6 0.6797 5.4906 2.8525 13 7 1.0063 6.2281 1.8136 14 14 -0.8817 5.8625 3.8082 15 1 -0.5371 6.1674 5.2201 16 1 -1.5665 7.0321 3.2015 17 1 -1.7829 4.6832 3.7621 18 6 4.0258 3.9043 3.3269 19 6 3.8718 5.2290 2.5769 20 6 2.1650 2.1100 1.1963 21 8 1.8417 1.5048 2.3698 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.2582 1.5014 -2.1234 28 1 3.3062 5.0527 -0.0028 29 1 1.7734 5.9883 1.2705 30 1 3.9222 3.9252 4.4118 31 1 4.7471 3.1859 2.9373 32 1 4.4919 5.3822 1.6936 33 1 3.6669 6.1213 3.1684 34 1 0.9081 1.5842 2.6090 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260389111.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:12 Heat of formation + Delta-G solvation = -22.162756 kcal Electronic energy + Delta-G solvation = -18394.669519 eV Core-core repulsion = 15511.473676 eV Total energy + Delta-G solvation = -2883.195842 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 3.62 seconds Orbital eigenvalues (eV) -39.72860 -36.65290 -36.56362 -35.42194 -33.36052 -31.97646 -29.36358 -28.50398 -25.27634 -23.68367 -22.62008 -21.46192 -20.71960 -19.28401 -17.64952 -16.87710 -15.77772 -15.70561 -14.57790 -14.06486 -13.98149 -13.79577 -13.59211 -13.11158 -12.80739 -12.46584 -12.23423 -12.08045 -11.90868 -11.30796 -11.26081 -10.90641 -10.82393 -10.57220 -10.55441 -10.41487 -10.18529 -9.98706 -9.56100 -9.02330 -8.64528 -8.35937 -8.05784 -7.70532 -6.42028 -4.20070 1.62645 1.81672 2.54487 3.36167 3.38244 3.56988 4.01431 4.43100 4.86633 4.94849 5.12937 5.17129 5.28641 5.41638 5.52050 5.64490 5.72896 5.86615 5.98254 6.03314 6.15287 6.20176 6.30847 6.37674 6.43076 6.56985 6.67045 6.70803 6.81970 6.95380 7.17696 7.26848 7.37361 8.14502 8.32020 8.33762 8.77912 9.55714 10.95750 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.015114 B = 0.008443 C = 0.007169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.165453 B = 3315.455748 C = 3904.954638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.075 4.075 3 C -0.109 4.109 4 C -0.121 4.121 5 C -0.039 4.039 6 Cl -0.089 7.089 7 C -0.101 4.101 8 C -0.019 4.019 9 C 0.058 3.942 10 C -0.566 4.566 11 H 0.057 0.943 12 C 0.028 3.972 13 N -0.897 5.897 14 Si 1.064 2.936 15 H -0.287 1.287 16 H -0.282 1.282 17 H -0.288 1.288 18 C -0.175 4.175 19 C -0.185 4.185 20 C 0.125 3.875 21 O -0.484 6.484 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.125 0.875 28 H 0.130 0.870 29 H 0.278 0.722 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.992 -8.603 -4.632 9.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.110 4.110 4 C -0.140 4.140 5 C -0.066 4.066 6 Cl -0.061 7.061 7 C -0.120 4.120 8 C -0.020 4.020 9 C 0.058 3.942 10 C -0.603 4.603 11 H 0.076 0.924 12 C -0.179 4.179 13 N -0.530 5.530 14 Si 0.892 3.108 15 H -0.213 1.213 16 H -0.207 1.207 17 H -0.214 1.214 18 C -0.212 4.212 19 C -0.223 4.223 20 C 0.080 3.920 21 O -0.294 6.294 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.142 0.858 28 H 0.148 0.852 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 0.350 -7.600 -4.649 8.916 hybrid contribution 0.826 -0.737 -0.351 1.161 sum 1.176 -8.337 -5.000 9.792 Atomic orbital electron populations 1.21710 0.94997 1.01258 1.02292 1.20356 0.95922 0.92300 1.02654 1.20029 1.01884 0.97042 0.92066 1.20506 1.02524 0.93296 0.97662 1.20796 1.05316 0.93961 0.86483 1.98319 1.92392 1.81653 1.33703 1.20860 1.01043 1.00238 0.89888 1.20250 0.94483 0.91844 0.95417 1.17717 0.90587 0.95793 0.90144 1.21212 1.04868 1.17348 1.16893 0.92450 1.25816 1.01959 0.92859 0.97294 1.70713 1.28629 1.38167 1.15505 0.83605 0.75262 0.76467 0.75420 1.21349 1.20730 1.21405 1.22791 1.01403 0.98766 0.98218 1.22912 1.04386 0.93486 1.01471 1.18053 0.99202 0.90128 0.84629 1.84661 1.31776 1.75954 1.37035 0.92528 0.92695 0.92637 0.91540 0.90453 0.85753 0.85223 0.91051 0.89849 0.91427 0.91392 0.89549 0.75699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.89 37.16 0.37 -1.43 16 2 C -0.07 -1.02 5.79 -27.89 -0.16 -1.18 16 3 C -0.11 -1.88 5.15 -104.48 -0.54 -2.42 16 4 C -0.12 -2.05 9.46 -39.57 -0.37 -2.43 16 5 C -0.04 -0.73 6.32 -39.49 -0.25 -0.98 16 6 Cl -0.09 -1.47 28.95 -51.86 -1.50 -2.97 16 7 C -0.10 -2.13 8.16 -39.57 -0.32 -2.46 16 8 C -0.02 -0.41 4.97 -104.48 -0.52 -0.93 16 9 C 0.06 1.38 0.69 -156.81 -0.11 1.27 16 10 C -0.57 -14.69 8.35 -34.44 -0.29 -14.98 16 11 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 12 C 0.03 0.74 5.43 -17.82 -0.10 0.65 16 13 N -0.90 -25.47 13.54 55.43 0.75 -24.72 16 14 Si 1.06 23.82 29.90 -169.99 -5.08 18.74 16 15 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 18 C -0.17 -3.82 9.94 -26.73 -0.27 -4.08 16 19 C -0.19 -4.21 8.51 -26.73 -0.23 -4.44 16 20 C 0.13 2.50 6.59 -39.22 -0.26 2.24 16 21 O -0.48 -9.22 11.72 -19.53 -0.23 -9.45 16 22 H 0.06 0.74 8.11 -51.93 -0.42 0.31 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 26 H 0.08 1.06 7.69 -51.93 -0.40 0.66 16 27 H 0.12 1.79 8.06 -52.48 -0.42 1.36 16 28 H 0.13 2.80 6.56 -52.48 -0.34 2.45 16 29 H 0.28 7.76 5.30 -40.82 -0.22 7.54 16 30 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.07 1.44 7.11 -51.93 -0.37 1.07 16 33 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 34 H 0.39 6.45 9.03 45.56 0.41 6.86 16 LS Contribution 303.12 15.07 4.57 4.57 Total: -1.00 -28.37 303.12 -8.04 -36.41 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -3.50 Total: 8.57 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: -3.04 Total: -31.15 kcal Atomic # 7 Polarization: -25.47 SS G_CDS: 0.75 Total: -24.72 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.23 Total: -9.45 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -5.08 Total: 18.74 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -1.50 Total: -2.97 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.37 -8.04 -36.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260389111.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.249 kcal (2) G-P(sol) polarization free energy of solvation -28.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.62 seconds