Wall clock time and date at job start Mon Mar 30 2020 07:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47003 * 2 1 4 4 C 1.38163 * 120.02546 * 264.97820 * 3 2 1 5 5 C 1.38340 * 120.04692 * 180.02562 * 4 3 2 6 6 Cl 1.73606 * 119.95794 * 179.97438 * 5 4 3 7 7 C 1.38389 * 120.08218 * 359.70067 * 5 4 3 8 8 C 1.38115 * 120.04615 * 0.55023 * 7 5 4 9 9 C 1.50700 * 120.02389 * 179.74468 * 8 7 5 10 10 C 1.50706 * 115.54584 * 114.87613 * 9 8 7 11 11 H 1.07994 * 119.99977 * 99.51671 * 10 9 8 12 12 C 1.37875 * 119.99966 * 279.52019 * 10 9 8 13 13 N 1.31523 * 119.99911 * 2.43310 * 12 10 9 14 14 Si 1.86801 * 120.00054 * 182.16535 * 12 10 9 15 15 H 1.48498 * 109.47173 * 59.99586 * 14 12 10 16 16 H 1.48497 * 109.47069 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46749 * 299.99428 * 14 12 10 18 18 C 1.52999 * 117.52184 * 260.57587 * 9 8 7 19 19 C 1.52993 * 117.49952 * 329.20968 * 9 8 7 20 20 C 1.38701 * 120.02357 * 85.00314 * 3 2 1 21 21 O 1.35932 * 120.04021 * 359.97438 * 20 3 2 22 22 H 1.09006 * 109.47460 * 300.00000 * 1 2 3 23 23 H 1.08999 * 109.47506 * 59.99713 * 1 2 3 24 24 H 1.08995 * 109.47217 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47167 * 239.99730 * 2 1 3 26 26 H 1.09002 * 109.47022 * 120.00205 * 2 1 3 27 27 H 1.08006 * 119.97523 * 0.02562 * 4 3 2 28 28 H 1.08004 * 119.97514 * 180.30318 * 7 5 4 29 29 H 0.97001 * 119.99974 * 5.13967 * 13 12 10 30 30 H 1.08999 * 117.49746 * 214.97387 * 18 9 8 31 31 H 1.09000 * 117.49852 * 359.97438 * 18 9 8 32 32 H 1.09001 * 117.49919 * 359.97057 * 19 9 8 33 33 H 1.09005 * 117.49983 * 144.99790 * 19 9 8 34 34 H 0.96696 * 113.99599 * 273.02748 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3614 2.0377 -1.1916 5 6 2.8231 3.3418 -1.1921 6 17 3.2367 4.1145 -2.6907 7 6 2.9503 4.0330 0.0000 8 6 2.6272 3.4182 1.1938 9 6 2.7714 4.1695 2.4922 10 6 1.4869 4.4395 3.2328 11 1 1.1988 3.8097 4.0615 12 6 0.6797 5.4906 2.8525 13 7 1.0063 6.2281 1.8136 14 14 -0.8817 5.8625 3.8082 15 1 -0.5371 6.1674 5.2201 16 1 -1.5665 7.0321 3.2015 17 1 -1.7829 4.6832 3.7621 18 6 4.0258 3.9043 3.3269 19 6 3.8718 5.2290 2.5769 20 6 2.1650 2.1100 1.1963 21 8 1.8417 1.5048 2.3698 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.2582 1.5014 -2.1234 28 1 3.3062 5.0527 -0.0028 29 1 1.7734 5.9883 1.2705 30 1 3.9222 3.9252 4.4118 31 1 4.7471 3.1859 2.9373 32 1 4.4919 5.3822 1.6936 33 1 3.6669 6.1213 3.1684 34 1 0.9081 1.5842 2.6090 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260389111.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:10 Heat of formation + Delta-G solvation = -37.100677 kcal Electronic energy + Delta-G solvation = -18395.317275 eV Core-core repulsion = 15511.473676 eV Total energy + Delta-G solvation = -2883.843599 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.22454 -38.35468 -37.98734 -36.83846 -34.63271 -33.95528 -30.80389 -29.87562 -27.23535 -24.97574 -24.18069 -23.14254 -22.24127 -20.97789 -19.15764 -18.65699 -17.26331 -17.17688 -16.15585 -15.67948 -15.57330 -15.28369 -14.88267 -14.64221 -14.33942 -14.11229 -13.61646 -13.60338 -13.19776 -12.96999 -12.66049 -12.42614 -12.25421 -12.03639 -11.99222 -11.95247 -11.74939 -11.65598 -11.15364 -10.78419 -10.56144 -10.25446 -9.57165 -9.23628 -8.49135 -6.27813 0.14785 0.34488 1.12744 1.55691 1.61475 1.80469 2.52025 2.59639 3.20106 3.29802 3.47980 3.75706 3.82186 4.12359 4.25115 4.33723 4.38767 4.43494 4.51332 4.65377 4.73162 4.78194 4.90798 5.00352 5.02819 5.07464 5.18387 5.32732 5.36136 5.39950 5.44635 5.69735 5.80313 6.18073 6.26877 6.72543 6.90776 7.55078 8.89597 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.015114 B = 0.008443 C = 0.007169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.165453 B = 3315.455748 C = 3904.954638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.072 4.072 3 C -0.100 4.100 4 C -0.113 4.113 5 C -0.044 4.044 6 Cl -0.071 7.071 7 C -0.119 4.119 8 C -0.046 4.046 9 C 0.042 3.958 10 C -0.570 4.570 11 H 0.052 0.948 12 C -0.016 4.016 13 N -0.929 5.929 14 Si 1.105 2.895 15 H -0.276 1.276 16 H -0.291 1.291 17 H -0.267 1.267 18 C -0.162 4.162 19 C -0.187 4.187 20 C 0.110 3.890 21 O -0.489 6.489 22 H 0.043 0.957 23 H 0.053 0.947 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.158 0.842 28 H 0.112 0.888 29 H 0.271 0.729 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.376 -10.696 -5.489 12.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 C -0.101 4.101 4 C -0.131 4.131 5 C -0.070 4.070 6 Cl -0.042 7.042 7 C -0.138 4.138 8 C -0.048 4.048 9 C 0.042 3.958 10 C -0.607 4.607 11 H 0.070 0.930 12 C -0.217 4.217 13 N -0.565 5.565 14 Si 0.928 3.072 15 H -0.202 1.202 16 H -0.217 1.217 17 H -0.193 1.193 18 C -0.199 4.199 19 C -0.225 4.225 20 C 0.065 3.935 21 O -0.300 6.300 22 H 0.062 0.938 23 H 0.072 0.928 24 H 0.099 0.901 25 H 0.111 0.889 26 H 0.096 0.904 27 H 0.176 0.824 28 H 0.130 0.870 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -0.253 -9.714 -5.497 11.165 hybrid contribution 1.082 -0.134 -0.132 1.098 sum 0.829 -9.849 -5.629 11.374 Atomic orbital electron populations 1.21706 0.93966 1.02775 1.01624 1.20450 0.96657 0.89817 1.03964 1.20414 1.00185 0.98591 0.90938 1.20912 1.00676 0.92568 0.98976 1.20896 1.05012 0.94625 0.86516 1.98321 1.92227 1.81554 1.32139 1.20753 1.02467 0.99728 0.90861 1.20177 0.96721 0.93104 0.94763 1.17778 0.90105 0.96501 0.91420 1.21430 1.05589 1.16959 1.16709 0.93013 1.26975 1.04353 0.92916 0.97443 1.70794 1.29316 1.39478 1.16901 0.83075 0.72707 0.76632 0.74742 1.20172 1.21695 1.19251 1.22786 1.00910 0.98160 0.98040 1.22794 1.04850 0.93007 1.01800 1.18233 0.99638 0.89801 0.85823 1.84627 1.32553 1.75656 1.37144 0.93773 0.92822 0.90066 0.88945 0.90432 0.82414 0.87005 0.91841 0.89853 0.90061 0.90448 0.91617 0.74860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.89 71.98 0.71 -2.37 16 2 C -0.07 -1.70 5.79 29.85 0.17 -1.52 16 3 C -0.10 -3.22 5.15 -19.77 -0.10 -3.32 16 4 C -0.11 -3.52 9.46 22.28 0.21 -3.31 16 5 C -0.04 -1.58 6.32 22.33 0.14 -1.44 16 6 Cl -0.07 -2.24 28.95 -2.72 -0.08 -2.31 16 7 C -0.12 -5.05 8.16 22.28 0.18 -4.87 16 8 C -0.05 -2.06 4.97 -19.77 -0.10 -2.16 16 9 C 0.04 2.05 0.69 -53.67 -0.04 2.01 16 10 C -0.57 -29.93 8.35 25.60 0.21 -29.71 16 11 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 12 C -0.02 -0.85 5.43 84.65 0.46 -0.39 16 13 N -0.93 -54.05 13.54 21.45 0.29 -53.76 16 14 Si 1.11 48.11 29.90 68.60 2.05 50.16 16 15 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 16 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 17 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 18 C -0.16 -7.11 9.94 30.59 0.30 -6.80 16 19 C -0.19 -8.75 8.51 30.59 0.26 -8.49 16 20 C 0.11 4.30 6.59 22.50 0.15 4.45 16 21 O -0.49 -18.20 11.72 -92.78 -1.09 -19.29 16 22 H 0.04 1.05 8.11 -2.38 -0.02 1.03 16 23 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.09 1.75 8.05 -2.39 -0.02 1.73 16 26 H 0.08 1.87 7.69 -2.39 -0.02 1.85 16 27 H 0.16 3.84 8.06 -2.91 -0.02 3.82 16 28 H 0.11 5.02 6.56 -2.91 -0.02 5.00 16 29 H 0.27 15.65 5.30 -92.71 -0.49 15.16 16 30 H 0.08 3.60 8.14 -2.39 -0.02 3.58 16 31 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 32 H 0.08 3.40 7.11 -2.39 -0.02 3.38 16 33 H 0.07 3.29 8.14 -2.38 -0.02 3.27 16 34 H 0.39 12.93 9.03 -74.06 -0.67 12.27 16 Total: -1.00 -61.01 303.12 4.47 -56.54 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: 0.72 Total: 26.57 kcal Atomic # 6 Polarization: -60.48 SS G_CDS: 2.57 Total: -57.92 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.29 Total: -53.76 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -1.09 Total: -19.29 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.05 Total: 50.16 kcal Atomic # 17 Polarization: -2.24 SS G_CDS: -0.08 Total: -2.31 kcal Total: -61.01 4.47 -56.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260389111.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.443 kcal (2) G-P(sol) polarization free energy of solvation -61.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds