Wall clock time and date at job start Mon Mar 30 2020 07:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35908 * 116.99286 * 2 1 4 4 C 1.38722 * 120.05017 * 359.97186 * 3 2 1 5 5 C 1.38245 * 119.92869 * 179.74860 * 4 3 2 6 6 Cl 1.73600 * 119.98430 * 180.29630 * 5 4 3 7 7 C 1.38407 * 120.02794 * 0.55129 * 5 4 3 8 8 C 1.38220 * 120.09529 * 359.44790 * 7 5 4 9 9 C 1.38171 * 120.07334 * 0.27518 * 8 7 5 10 10 C 1.50697 * 120.01713 * 179.97438 * 9 8 7 11 11 H 1.08993 * 109.47052 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47025 * 59.99979 * 10 9 8 13 13 H 1.07994 * 120.00158 * 304.89050 * 12 10 9 14 14 C 1.37876 * 119.99880 * 124.88606 * 12 10 9 15 15 N 1.31514 * 120.00070 * 184.79588 * 14 12 10 16 16 Si 1.86803 * 120.00196 * 4.80256 * 14 12 10 17 17 H 1.48504 * 109.47021 * 84.60271 * 16 14 12 18 18 H 1.48496 * 109.47170 * 204.60941 * 16 14 12 19 19 H 1.48507 * 109.46884 * 324.60529 * 16 14 12 20 20 C 1.53007 * 109.47316 * 300.00221 * 10 9 8 21 21 C 1.52995 * 117.49794 * 243.83862 * 20 10 9 22 22 C 1.52994 * 117.50015 * 175.21255 * 20 10 9 23 23 H 1.08992 * 109.47761 * 300.00247 * 1 2 3 24 24 H 1.08998 * 109.47022 * 60.00944 * 1 2 3 25 25 H 1.09004 * 109.46281 * 180.02562 * 1 2 3 26 26 H 1.08003 * 120.03907 * 0.02562 * 4 3 2 27 27 H 1.08002 * 119.94953 * 179.72286 * 7 5 4 28 28 H 1.08011 * 119.96141 * 180.29863 * 8 7 5 29 29 H 0.96999 * 120.00170 * 179.97438 * 15 14 12 30 30 H 1.09000 * 115.54744 * 29.54234 * 20 10 9 31 31 H 1.08995 * 117.50154 * 359.97438 * 21 20 10 32 32 H 1.08999 * 117.49945 * 145.02326 * 21 20 10 33 33 H 1.08998 * 117.49911 * 214.97873 * 22 20 10 34 34 H 1.09010 * 117.49578 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2912 2.3750 -0.0006 5 6 1.9213 3.6055 0.0047 6 17 0.9783 5.0631 0.0117 7 6 3.3036 3.6759 -0.0010 8 6 4.0566 2.5169 -0.0004 9 6 3.4311 1.2848 0.0001 10 6 4.2534 0.0219 0.0001 11 1 3.5904 -0.8432 0.0001 12 6 5.1232 -0.0111 1.2304 13 1 5.7911 0.8109 1.4417 14 6 5.0663 -1.0906 2.0861 15 7 5.7538 -1.0781 3.2072 16 14 4.0127 -2.5712 1.6532 17 1 4.7808 -3.4836 0.7683 18 1 3.6340 -3.2897 2.8963 19 1 2.7857 -2.1171 0.9506 20 6 5.1358 -0.0123 -1.2494 21 6 4.8832 -1.1309 -2.2621 22 6 6.1323 -1.1659 -1.3792 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3632 -1.0278 0.0005 26 1 0.2126 2.3200 -0.0006 27 1 3.7945 4.6379 -0.0014 28 1 5.1352 2.5743 0.0000 29 1 5.7135 -1.8374 3.8094 30 1 5.4382 0.9602 -1.6381 31 1 4.0888 -1.8427 -2.0381 32 1 5.0194 -0.8946 -3.3174 33 1 7.0901 -0.9526 -1.8536 34 1 6.1589 -1.9008 -0.5745 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260392139.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:52 Heat of formation + Delta-G solvation = -15.942377 kcal Electronic energy + Delta-G solvation = -18224.314751 eV Core-core repulsion = 15341.388644 eV Total energy + Delta-G solvation = -2882.926106 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.24778 -38.79907 -38.24006 -37.09771 -34.74738 -33.00056 -31.14673 -29.35878 -27.98513 -25.35536 -23.43685 -22.95860 -22.72022 -20.64231 -19.19926 -18.93044 -17.30610 -16.84751 -16.66138 -16.31885 -16.02167 -15.32472 -15.22427 -14.62190 -14.57728 -14.20544 -14.09709 -13.56768 -12.90186 -12.86471 -12.77750 -12.73438 -12.19426 -12.16821 -11.94013 -11.89020 -11.73242 -11.64667 -11.27785 -10.89964 -10.67990 -10.32835 -9.64457 -8.95078 -8.24836 -6.24849 0.30006 0.46185 1.14245 1.33221 1.36233 1.48294 2.36787 2.47701 2.75218 3.09715 3.26669 3.82829 3.97181 4.13520 4.21307 4.29929 4.34276 4.39611 4.42211 4.56546 4.68537 4.73094 4.78402 4.87861 4.94806 5.05777 5.21860 5.24503 5.41401 5.46461 5.55942 5.67374 5.73540 5.83931 6.37380 6.51713 6.80136 7.38756 8.91255 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.019783 B = 0.006998 C = 0.006701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.041861 B = 4000.043531 C = 4177.602182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.332 6.332 3 C 0.115 3.885 4 C -0.198 4.198 5 C -0.019 4.019 6 Cl -0.065 7.065 7 C -0.144 4.144 8 C -0.073 4.073 9 C -0.081 4.081 10 C 0.069 3.931 11 H 0.053 0.947 12 C -0.481 4.481 13 H 0.042 0.958 14 C 0.020 3.980 15 N -0.948 5.948 16 Si 0.912 3.088 17 H -0.266 1.266 18 H -0.296 1.296 19 H -0.232 1.232 20 C -0.137 4.137 21 C -0.180 4.180 22 C -0.178 4.178 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.113 0.887 26 H 0.155 0.845 27 H 0.149 0.851 28 H 0.132 0.868 29 H 0.262 0.738 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.661 5.903 -10.301 15.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.246 6.246 3 C 0.069 3.931 4 C -0.217 4.217 5 C -0.046 4.046 6 Cl -0.037 7.037 7 C -0.163 4.163 8 C -0.092 4.092 9 C -0.082 4.082 10 C 0.051 3.949 11 H 0.071 0.929 12 C -0.519 4.519 13 H 0.060 0.940 14 C -0.176 4.176 15 N -0.589 5.589 16 Si 0.737 3.263 17 H -0.191 1.191 18 H -0.223 1.223 19 H -0.156 1.156 20 C -0.155 4.155 21 C -0.216 4.216 22 C -0.215 4.215 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.131 0.869 26 H 0.172 0.828 27 H 0.167 0.833 28 H 0.150 0.850 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.097 0.903 32 H 0.130 0.870 33 H 0.120 0.880 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.638 5.732 -10.145 15.778 hybrid contribution -0.294 -0.602 0.595 0.897 sum -10.932 5.129 -9.549 15.395 Atomic orbital electron populations 1.23359 0.76952 1.05315 1.02372 1.86179 1.23115 1.26501 1.88762 1.18833 0.91748 0.84500 0.97981 1.21099 1.01034 0.90057 1.09484 1.20547 0.91812 0.87083 1.05135 1.98332 1.72620 1.35671 1.97028 1.21092 0.91632 0.99541 1.03991 1.20834 1.00352 0.90433 0.97541 1.19936 0.90963 0.97502 0.99845 1.17860 0.92485 0.92349 0.92254 0.92854 1.21020 1.21066 1.04207 1.05577 0.94010 1.25736 0.96575 1.00901 0.94422 1.70029 1.44786 1.32103 1.11954 0.86264 0.81908 0.80364 0.77722 1.19133 1.22341 1.15583 1.22506 1.01938 0.93827 0.97243 1.23086 0.99399 1.02132 0.97018 1.22754 0.94433 1.02433 1.01835 0.92013 0.90861 0.86875 0.82775 0.83294 0.84993 0.92889 0.88103 0.90311 0.86967 0.87986 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.34 9.81 113.37 1.11 1.45 16 2 O -0.33 -12.03 9.13 -92.52 -0.84 -12.88 16 3 C 0.11 4.27 6.66 22.50 0.15 4.42 16 4 C -0.20 -6.08 8.82 22.39 0.20 -5.89 16 5 C -0.02 -0.57 6.32 22.31 0.14 -0.43 16 6 Cl -0.07 -1.61 28.95 -2.72 -0.08 -1.69 16 7 C -0.14 -4.48 9.83 22.31 0.22 -4.26 16 8 C -0.07 -2.70 8.52 22.25 0.19 -2.51 16 9 C -0.08 -3.35 4.78 -19.77 -0.09 -3.44 16 10 C 0.07 3.15 2.04 -12.28 -0.03 3.13 16 11 H 0.05 2.53 3.06 -2.39 -0.01 2.52 16 12 C -0.48 -26.43 7.94 25.60 0.20 -26.23 16 13 H 0.04 2.52 7.89 -2.91 -0.02 2.50 16 14 C 0.02 1.18 5.47 84.65 0.46 1.64 16 15 N -0.95 -58.97 13.96 21.45 0.30 -58.67 16 16 Si 0.91 44.31 26.75 68.60 1.83 46.14 16 17 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 19 H -0.23 -10.67 6.07 99.48 0.60 -10.07 16 20 C -0.14 -5.38 5.10 -10.79 -0.06 -5.43 16 21 C -0.18 -6.06 10.18 30.59 0.31 -5.75 16 22 C -0.18 -6.80 9.78 30.59 0.30 -6.50 16 23 H 0.06 1.34 7.66 -2.39 -0.02 1.32 16 24 H 0.07 1.40 7.66 -2.39 -0.02 1.38 16 25 H 0.11 2.22 8.14 -2.38 -0.02 2.21 16 26 H 0.15 3.82 6.30 -2.91 -0.02 3.80 16 27 H 0.15 3.84 8.06 -2.91 -0.02 3.81 16 28 H 0.13 4.85 7.81 -2.90 -0.02 4.82 16 29 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 30 H 0.10 3.66 7.40 -2.39 -0.02 3.64 16 31 H 0.08 2.74 8.03 -2.39 -0.02 2.72 16 32 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 33 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 34 H 0.06 2.90 7.37 -2.38 -0.02 2.88 16 Total: -1.00 -65.09 298.29 5.33 -59.76 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 1.00 Total: 17.15 kcal Atomic # 6 Polarization: -52.92 SS G_CDS: 3.11 Total: -49.81 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.30 Total: -58.67 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.84 Total: -12.88 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.83 Total: 46.14 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.08 Total: -1.69 kcal Total: -65.09 5.33 -59.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260392139.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.822 kcal (2) G-P(sol) polarization free energy of solvation -65.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds