Wall clock time and date at job start Mon Mar 30 2020 07:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35895 * 117.00318 * 2 1 4 4 C 1.38731 * 120.04865 * 0.02564 * 3 2 1 5 5 C 1.38237 * 119.93002 * 179.97438 * 4 3 2 6 6 Cl 1.73604 * 119.98213 * 179.97438 * 5 4 3 7 7 C 1.38399 * 120.02917 * 0.02562 * 5 4 3 8 8 C 1.38221 * 120.10228 * 359.74177 * 7 5 4 9 9 C 1.38179 * 120.06267 * 0.51152 * 8 7 5 10 10 C 1.50702 * 120.01084 * 179.76339 * 9 8 7 11 11 H 1.09000 * 109.46873 * 179.72260 * 10 9 8 12 12 C 1.50698 * 109.47833 * 299.72470 * 10 9 8 13 13 H 1.08009 * 119.99742 * 64.94083 * 12 10 9 14 14 C 1.37877 * 120.00369 * 244.95252 * 12 10 9 15 15 N 1.31506 * 119.99932 * 184.78719 * 14 12 10 16 16 Si 1.86801 * 119.99576 * 4.78040 * 14 12 10 17 17 H 1.48495 * 109.47158 * 84.63752 * 16 14 12 18 18 H 1.48507 * 109.47019 * 204.63172 * 16 14 12 19 19 H 1.48503 * 109.47382 * 324.63410 * 16 14 12 20 20 C 1.53004 * 109.46895 * 59.72874 * 10 9 8 21 21 C 1.53004 * 117.49696 * 174.85478 * 20 10 9 22 22 C 1.52995 * 60.03060 * 252.49740 * 21 20 10 23 23 H 1.09003 * 109.47142 * 300.00084 * 1 2 3 24 24 H 1.09000 * 109.47397 * 59.99132 * 1 2 3 25 25 H 1.08996 * 109.47617 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.03043 * 359.95517 * 4 3 2 27 27 H 1.08007 * 119.95293 * 179.97438 * 7 5 4 28 28 H 1.08000 * 119.96904 * 180.25179 * 8 7 5 29 29 H 0.97001 * 120.00043 * 179.97438 * 15 14 12 30 30 H 1.09001 * 115.55212 * 320.52089 * 20 10 9 31 31 H 1.09004 * 117.49943 * 0.02562 * 21 20 10 32 32 H 1.09000 * 117.49931 * 144.99416 * 21 20 10 33 33 H 1.09003 * 117.50131 * 107.50193 * 22 21 20 34 34 H 1.09000 * 117.50142 * 252.52565 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3750 0.0005 5 6 1.9217 3.6053 0.0011 6 17 0.9788 5.0630 0.0011 7 6 3.3039 3.6755 0.0005 8 6 4.0569 2.5165 0.0049 9 6 3.4312 1.2845 -0.0010 10 6 4.2534 0.0215 -0.0016 11 1 3.5903 -0.8436 -0.0015 12 6 5.1223 -0.0118 -1.2324 13 1 5.9004 0.7256 -1.3641 14 6 4.9240 -0.9834 -2.1904 15 7 5.7409 -1.0707 -3.2172 16 14 3.4950 -2.1757 -2.0294 17 1 2.2688 -1.5580 -2.5950 18 1 3.8067 -3.4247 -2.7697 19 1 3.2736 -2.4923 -0.5955 20 6 5.1365 -0.0128 1.2473 21 6 5.9623 -1.2770 1.4942 22 6 4.7412 -0.9792 2.3666 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 0.2129 2.3200 0.0002 27 1 3.7950 4.6375 0.0005 28 1 5.1354 2.5738 0.0085 29 1 5.6016 -1.7545 -3.8910 30 1 5.5772 0.9409 1.5378 31 1 5.8767 -2.0841 0.7665 32 1 6.9462 -1.1550 1.9470 33 1 3.8519 -1.5906 2.2133 34 1 4.9218 -0.6609 3.3933 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260392143.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:55 Heat of formation + Delta-G solvation = -16.478529 kcal Electronic energy + Delta-G solvation = -18259.746329 eV Core-core repulsion = 15376.796973 eV Total energy + Delta-G solvation = -2882.949356 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.26193 -38.79226 -38.22883 -37.09520 -34.80639 -32.98902 -31.15376 -29.38583 -28.00402 -25.30910 -23.46392 -22.97316 -22.72926 -20.65199 -19.18104 -18.96528 -17.32875 -16.79667 -16.72977 -16.39558 -16.00712 -15.33684 -15.18544 -14.62946 -14.51129 -14.21525 -14.13734 -13.56455 -13.02025 -12.89501 -12.77852 -12.68854 -12.25819 -12.17355 -11.96799 -11.89065 -11.76148 -11.63907 -11.28866 -10.83703 -10.69162 -10.39363 -9.64773 -8.95961 -8.26580 -6.26516 0.30104 0.45638 1.13914 1.32367 1.35724 1.44666 2.35226 2.45547 2.75496 3.06181 3.27380 3.82191 3.97473 4.12371 4.21021 4.28849 4.34152 4.37502 4.40935 4.55186 4.66699 4.75468 4.77809 4.88416 4.92784 5.04390 5.21109 5.24164 5.41984 5.45455 5.53709 5.65950 5.74288 5.83483 6.36320 6.49397 6.78618 7.37104 8.89465 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018479 B = 0.007354 C = 0.006962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.870091 B = 3806.574816 C = 4020.701864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.334 6.334 3 C 0.112 3.888 4 C -0.197 4.197 5 C -0.020 4.020 6 Cl -0.065 7.065 7 C -0.143 4.143 8 C -0.072 4.072 9 C -0.082 4.082 10 C 0.070 3.930 11 H 0.052 0.948 12 C -0.482 4.482 13 H 0.043 0.957 14 C 0.020 3.980 15 N -0.946 5.946 16 Si 0.926 3.074 17 H -0.271 1.271 18 H -0.294 1.294 19 H -0.246 1.246 20 C -0.136 4.136 21 C -0.176 4.176 22 C -0.176 4.176 23 H 0.075 0.925 24 H 0.060 0.940 25 H 0.114 0.886 26 H 0.154 0.846 27 H 0.150 0.850 28 H 0.133 0.867 29 H 0.263 0.737 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.781 6.087 10.115 15.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.248 6.248 3 C 0.067 3.933 4 C -0.217 4.217 5 C -0.047 4.047 6 Cl -0.037 7.037 7 C -0.162 4.162 8 C -0.091 4.091 9 C -0.084 4.084 10 C 0.051 3.949 11 H 0.070 0.930 12 C -0.520 4.520 13 H 0.061 0.939 14 C -0.177 4.177 15 N -0.586 5.586 16 Si 0.752 3.248 17 H -0.197 1.197 18 H -0.221 1.221 19 H -0.170 1.170 20 C -0.154 4.154 21 C -0.213 4.213 22 C -0.213 4.213 23 H 0.094 0.906 24 H 0.079 0.921 25 H 0.132 0.868 26 H 0.172 0.828 27 H 0.167 0.833 28 H 0.150 0.850 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.098 0.902 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.760 5.919 9.953 15.807 hybrid contribution -0.539 -0.451 -0.694 0.988 sum -11.299 5.468 9.259 15.598 Atomic orbital electron populations 1.23373 0.76910 1.05376 1.02432 1.86115 1.23162 1.26681 1.88846 1.18832 0.91768 0.84450 0.98270 1.21101 1.01030 0.90096 1.09431 1.20537 0.91827 0.87057 1.05250 1.98331 1.72638 1.35659 1.97038 1.21098 0.91616 0.99570 1.03881 1.20829 1.00357 0.90396 0.97500 1.20052 0.90914 0.97764 0.99634 1.17839 0.92572 0.92043 0.92417 0.92992 1.21023 1.15378 1.12746 1.02836 0.93873 1.25739 0.97954 0.99018 0.95034 1.70021 1.39054 1.36071 1.13488 0.86042 0.80805 0.78692 0.79226 1.19663 1.22132 1.17028 1.22384 1.02411 0.94364 0.96280 1.22732 0.95920 1.00145 1.02523 1.23056 0.98417 1.03581 0.96256 0.90636 0.92146 0.86821 0.82808 0.83261 0.84951 0.92813 0.88270 0.91434 0.87983 0.90198 0.87102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.32 9.81 113.37 1.11 1.43 16 2 O -0.33 -12.12 9.26 -92.37 -0.86 -12.97 16 3 C 0.11 4.18 6.66 22.50 0.15 4.33 16 4 C -0.20 -6.12 8.82 22.39 0.20 -5.92 16 5 C -0.02 -0.60 6.32 22.31 0.14 -0.46 16 6 Cl -0.07 -1.62 28.95 -2.72 -0.08 -1.70 16 7 C -0.14 -4.46 9.83 22.30 0.22 -4.24 16 8 C -0.07 -2.67 8.66 22.25 0.19 -2.48 16 9 C -0.08 -3.40 4.78 -19.76 -0.09 -3.49 16 10 C 0.07 3.20 1.97 -12.28 -0.02 3.18 16 11 H 0.05 2.48 3.13 -2.39 -0.01 2.48 16 12 C -0.48 -26.57 8.27 25.60 0.21 -26.36 16 13 H 0.04 2.60 8.06 -2.91 -0.02 2.58 16 14 C 0.02 1.13 5.47 84.66 0.46 1.60 16 15 N -0.95 -58.76 13.96 21.45 0.30 -58.46 16 16 Si 0.93 45.56 27.38 68.60 1.88 47.44 16 17 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 18 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 19 H -0.25 -11.42 6.21 99.48 0.62 -10.80 16 20 C -0.14 -5.37 4.94 -10.77 -0.05 -5.42 16 21 C -0.18 -6.63 10.00 30.59 0.31 -6.33 16 22 C -0.18 -5.90 10.18 30.62 0.31 -5.58 16 23 H 0.08 1.45 7.66 -2.39 -0.02 1.43 16 24 H 0.06 1.34 7.66 -2.39 -0.02 1.33 16 25 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.15 3.85 6.30 -2.91 -0.02 3.83 16 27 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 28 H 0.13 4.84 7.79 -2.91 -0.02 4.82 16 29 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 30 H 0.10 3.65 7.40 -2.39 -0.02 3.64 16 31 H 0.07 2.87 8.14 -2.38 -0.02 2.85 16 32 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 33 H 0.08 2.75 8.08 -2.39 -0.02 2.73 16 34 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -64.94 300.70 5.39 -59.55 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 1.01 Total: 15.90 kcal Atomic # 6 Polarization: -52.88 SS G_CDS: 3.13 Total: -49.75 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: 0.30 Total: -58.46 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.86 Total: -12.97 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.88 Total: 47.44 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.08 Total: -1.70 kcal Total: -64.94 5.39 -59.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260392143.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.073 kcal (2) G-P(sol) polarization free energy of solvation -64.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds