Wall clock time and date at job start Mon Mar 30 2020 07:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35931 * 117.00209 * 2 1 4 4 C 1.38711 * 120.05490 * 0.02562 * 3 2 1 5 5 C 1.38149 * 119.95395 * 179.97438 * 4 3 2 6 6 C 1.38282 * 120.07839 * 359.97438 * 5 4 3 7 7 C 1.38241 * 120.11781 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.97903 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.47406 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.47062 * 299.99286 * 8 7 6 11 11 H 1.07998 * 119.99503 * 0.02562 * 10 8 7 12 12 C 1.37871 * 120.00434 * 179.97438 * 10 8 7 13 13 N 1.31516 * 119.99826 * 359.72891 * 12 10 8 14 14 Si 1.86800 * 120.00406 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46758 * 269.72576 * 14 12 10 16 16 H 1.48499 * 109.47026 * 29.72423 * 14 12 10 17 17 H 1.48496 * 109.47474 * 149.72459 * 14 12 10 18 18 C 1.52991 * 109.47315 * 59.99549 * 8 7 6 19 19 C 1.53003 * 117.50168 * 128.75262 * 18 8 7 20 20 C 1.52998 * 117.49954 * 60.08957 * 18 8 7 21 21 C 1.38264 * 120.04490 * 0.28956 * 7 6 5 22 22 Cl 1.73598 * 120.03742 * 179.72887 * 21 7 6 23 23 H 1.09001 * 109.47732 * 59.99290 * 1 2 3 24 24 H 1.09002 * 109.46891 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46865 * 299.99325 * 1 2 3 26 26 H 1.07999 * 120.02452 * 359.97438 * 4 3 2 27 27 H 1.07997 * 119.96141 * 179.97438 * 5 4 3 28 28 H 1.07999 * 119.93811 * 179.97438 * 6 5 4 29 29 H 0.97000 * 120.00236 * 0.27947 * 13 12 10 30 30 H 1.08999 * 115.55163 * 274.41883 * 18 8 7 31 31 H 1.09002 * 117.49518 * 359.97438 * 19 18 8 32 32 H 1.08993 * 117.50661 * 145.02064 * 19 18 8 33 33 H 1.08997 * 117.50075 * 214.98129 * 20 18 8 34 34 H 1.09002 * 117.49630 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2918 2.3752 0.0005 5 6 1.9212 3.6050 0.0011 6 6 3.3021 3.6768 0.0016 7 6 4.0569 2.5186 0.0021 8 6 5.5617 2.6005 0.0033 9 1 5.9804 1.5941 0.0041 10 6 6.0257 3.3371 -1.2269 11 1 5.3031 3.7090 -1.9381 12 6 7.3724 3.5370 -1.4439 13 7 8.2521 3.0895 -0.5746 14 14 7.9475 4.4506 -2.9684 15 1 8.1731 3.4813 -4.0706 16 1 6.9113 5.4327 -3.3772 17 1 9.2151 5.1640 -2.6693 18 6 6.0308 3.3484 1.2528 19 6 7.1045 2.6807 2.1145 20 6 5.6590 2.7545 2.6129 21 6 3.4322 1.2852 -0.0039 22 17 4.3803 -0.1691 -0.0103 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 0.2132 2.3202 0.0005 27 1 1.3340 4.5114 0.0011 28 1 3.7918 4.6394 0.0016 29 1 7.9535 2.6153 0.2172 30 1 6.0572 4.4348 1.1683 31 1 7.4763 1.7083 1.7913 32 1 7.8369 3.3277 2.5971 33 1 5.4411 3.4501 3.4232 34 1 5.0797 1.8311 2.6175 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260404814.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:07 Heat of formation + Delta-G solvation = -16.845236 kcal Electronic energy + Delta-G solvation = -18217.663066 eV Core-core repulsion = 15334.697808 eV Total energy + Delta-G solvation = -2882.965257 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.19370 -39.46159 -37.80150 -37.21428 -34.69810 -32.64639 -31.26059 -28.64860 -27.98765 -25.25708 -23.51190 -23.34835 -22.71299 -21.00410 -19.13972 -18.36307 -17.36821 -17.05798 -16.71652 -16.41833 -15.68913 -15.31304 -15.24379 -14.86217 -14.50802 -14.12227 -13.78691 -13.26730 -12.93947 -12.68564 -12.53659 -12.46918 -12.36106 -12.06815 -11.98278 -11.90528 -11.83098 -11.49953 -11.32509 -10.80277 -10.48420 -10.26942 -9.49027 -9.09653 -8.38769 -6.19217 0.29505 0.46735 1.35278 1.55957 1.63386 1.80712 2.31380 2.62116 2.77990 3.08109 3.31697 3.88929 3.99351 4.03964 4.21329 4.26095 4.32303 4.43032 4.43138 4.45373 4.60122 4.74207 4.74820 4.83441 4.96394 5.06023 5.18279 5.26692 5.29452 5.43638 5.53790 5.78807 5.87977 6.17343 6.36201 6.40185 6.83681 7.61243 8.99458 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.020984 B = 0.007061 C = 0.006666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.004506 B = 3964.692890 C = 4199.600857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.330 6.330 3 C 0.128 3.872 4 C -0.210 4.210 5 C -0.068 4.068 6 C -0.150 4.150 7 C -0.003 4.003 8 C 0.086 3.914 9 H 0.019 0.981 10 C -0.601 4.601 11 H 0.042 0.958 12 C -0.020 4.020 13 N -0.942 5.942 14 Si 1.106 2.894 15 H -0.283 1.283 16 H -0.273 1.273 17 H -0.285 1.285 18 C -0.121 4.121 19 C -0.172 4.172 20 C -0.173 4.173 21 C -0.104 4.104 22 Cl -0.080 7.080 23 H 0.068 0.932 24 H 0.118 0.882 25 H 0.070 0.930 26 H 0.169 0.831 27 H 0.163 0.837 28 H 0.122 0.878 29 H 0.283 0.717 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.868 -1.282 3.346 16.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.082 3.918 4 C -0.228 4.228 5 C -0.086 4.086 6 C -0.168 4.168 7 C -0.004 4.004 8 C 0.067 3.933 9 H 0.037 0.963 10 C -0.639 4.639 11 H 0.060 0.940 12 C -0.221 4.221 13 N -0.581 5.581 14 Si 0.930 3.070 15 H -0.209 1.209 16 H -0.198 1.198 17 H -0.211 1.211 18 C -0.140 4.140 19 C -0.209 4.209 20 C -0.210 4.210 21 C -0.131 4.131 22 Cl -0.052 7.052 23 H 0.086 0.914 24 H 0.136 0.864 25 H 0.089 0.911 26 H 0.186 0.814 27 H 0.180 0.820 28 H 0.140 0.860 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.124 0.876 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.373 -1.092 2.571 14.642 hybrid contribution -0.849 -0.775 0.729 1.361 sum -15.222 -1.867 3.299 15.687 Atomic orbital electron populations 1.23408 0.76002 1.05666 1.02636 1.86120 1.23843 1.25928 1.88509 1.18744 0.89647 0.86238 0.97157 1.21396 1.01207 0.90563 1.09681 1.21360 0.93480 0.98561 0.95190 1.20990 0.94264 0.97529 1.04041 1.19917 0.97200 0.90797 0.92442 1.17636 0.87180 0.95638 0.92839 0.96257 1.22114 0.94370 1.40057 1.07347 0.93998 1.26867 0.93523 0.97286 1.04393 1.70769 1.38004 1.36222 1.13123 0.83060 0.75668 0.75743 0.72484 1.20886 1.19767 1.21062 1.22372 1.02422 0.97935 0.91236 1.22716 0.92059 1.01463 1.04709 1.23007 0.97277 1.02680 0.98048 1.20326 0.89395 0.87877 1.15513 1.98291 1.72866 1.36629 1.97391 0.91367 0.86360 0.91102 0.81357 0.81983 0.85957 0.90347 0.90432 0.91164 0.89178 0.87562 0.90170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.33 -9.78 9.96 -92.78 -0.92 -10.70 16 3 C 0.13 4.29 6.68 22.52 0.15 4.44 16 4 C -0.21 -5.59 9.04 22.36 0.20 -5.39 16 5 C -0.07 -1.92 10.04 22.26 0.22 -1.69 16 6 C -0.15 -5.60 8.82 22.28 0.20 -5.40 16 7 C 0.00 -0.12 4.39 -19.86 -0.09 -0.21 16 8 C 0.09 4.28 1.76 -12.29 -0.02 4.26 16 9 H 0.02 1.07 5.79 -2.39 -0.01 1.05 16 10 C -0.60 -33.46 8.22 25.60 0.21 -33.25 16 11 H 0.04 2.35 7.60 -2.91 -0.02 2.32 16 12 C -0.02 -1.12 5.31 84.65 0.45 -0.67 16 13 N -0.94 -56.35 13.37 21.45 0.29 -56.06 16 14 Si 1.11 50.79 29.90 68.60 2.05 52.84 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 18 C -0.12 -5.59 3.85 -10.80 -0.04 -5.63 16 19 C -0.17 -7.52 8.13 30.62 0.25 -7.27 16 20 C -0.17 -6.68 9.87 30.62 0.30 -6.38 16 21 C -0.10 -4.25 6.33 22.41 0.14 -4.11 16 22 Cl -0.08 -3.36 26.55 -2.72 -0.07 -3.44 16 23 H 0.07 0.98 7.66 -2.39 -0.02 0.96 16 24 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.07 0.97 7.66 -2.38 -0.02 0.95 16 26 H 0.17 3.00 6.30 -2.91 -0.02 2.98 16 27 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 28 H 0.12 4.69 8.05 -2.91 -0.02 4.66 16 29 H 0.28 16.43 3.55 -92.71 -0.33 16.10 16 30 H 0.08 3.76 8.11 -2.39 -0.02 3.74 16 31 H 0.07 3.29 7.43 -2.39 -0.02 3.27 16 32 H 0.09 3.72 8.14 -2.39 -0.02 3.70 16 33 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 34 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -67.28 296.13 5.97 -61.31 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 1.54 Total: 15.95 kcal Atomic # 6 Polarization: -62.99 SS G_CDS: 3.09 Total: -59.90 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.29 Total: -56.06 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -0.92 Total: -10.70 kcal Atomic # 14 Polarization: 50.79 SS G_CDS: 2.05 Total: 52.84 kcal Atomic # 17 Polarization: -3.36 SS G_CDS: -0.07 Total: -3.44 kcal Total: -67.28 5.97 -61.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260404814.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.465 kcal (2) G-P(sol) polarization free energy of solvation -67.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds