Wall clock time and date at job start Mon Mar 30 2020 07:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35924 * 116.99874 * 2 1 4 4 C 1.38711 * 120.05892 * 359.97438 * 3 2 1 5 5 C 1.38151 * 119.95573 * 179.97438 * 4 3 2 6 6 C 1.38271 * 120.07953 * 0.28449 * 5 4 3 7 7 C 1.38252 * 120.11907 * 359.43914 * 6 5 4 8 8 C 1.50695 * 119.98166 * 180.25724 * 7 6 5 9 9 H 1.08997 * 109.47417 * 180.30397 * 8 7 6 10 10 C 1.50696 * 109.47099 * 60.30110 * 8 7 6 11 11 H 1.08003 * 119.99988 * 275.52340 * 10 8 7 12 12 C 1.37875 * 120.00020 * 95.52174 * 10 8 7 13 13 N 1.31512 * 120.00111 * 5.47681 * 12 10 8 14 14 Si 1.86800 * 119.99960 * 185.47638 * 12 10 8 15 15 H 1.48500 * 109.47444 * 89.99763 * 14 12 10 16 16 H 1.48503 * 109.47430 * 210.00065 * 14 12 10 17 17 H 1.48510 * 109.47259 * 329.99970 * 14 12 10 18 18 C 1.53006 * 109.47113 * 300.29957 * 8 7 6 19 19 C 1.52999 * 117.50035 * 246.54230 * 18 8 7 20 20 C 1.52998 * 117.49766 * 177.88293 * 18 8 7 21 21 C 1.38260 * 120.03915 * 0.56078 * 7 6 5 22 22 Cl 1.73596 * 120.03856 * 179.69996 * 21 7 6 23 23 H 1.08996 * 109.46855 * 299.99808 * 1 2 3 24 24 H 1.08994 * 109.47200 * 60.00275 * 1 2 3 25 25 H 1.09006 * 109.46699 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.02122 * 0.02562 * 4 3 2 27 27 H 1.08002 * 119.95695 * 180.02562 * 5 4 3 28 28 H 1.08001 * 119.94263 * 179.72447 * 6 5 4 29 29 H 0.97004 * 120.00094 * 180.02562 * 13 12 10 30 30 H 1.09003 * 115.54800 * 32.21354 * 18 8 7 31 31 H 1.09000 * 117.49323 * 0.02562 * 19 18 8 32 32 H 1.08997 * 117.49471 * 145.01774 * 19 18 8 33 33 H 1.08996 * 117.49951 * 214.98101 * 20 18 8 34 34 H 1.08997 * 117.50007 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2918 2.3752 -0.0005 5 6 1.9212 3.6050 0.0000 6 6 3.3020 3.6768 -0.0049 7 6 4.0570 2.5187 0.0014 8 6 5.5617 2.6006 0.0019 9 1 5.9804 1.5943 0.0018 10 6 6.0242 3.3370 1.2327 11 1 6.0607 4.4164 1.2344 12 6 6.4008 2.6327 2.3566 13 7 6.4597 1.3194 2.3206 14 14 6.8273 3.5440 3.9305 15 1 5.6017 3.7145 4.7515 16 1 7.8322 2.7645 4.6971 17 1 7.3871 4.8778 3.5941 18 6 6.0322 3.3488 -1.2470 19 6 6.8216 2.5556 -2.2903 20 6 7.5359 3.5813 -1.4067 21 6 3.4323 1.2853 0.0009 22 17 4.3803 -0.1690 0.0009 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2132 2.3202 -0.0005 27 1 1.3339 4.5114 0.0000 28 1 3.7917 4.6394 -0.0089 29 1 6.7243 0.8239 3.1115 30 1 5.3612 4.1278 -1.6090 31 1 7.0055 1.5006 -2.0870 32 1 6.6703 2.8130 -3.3386 33 1 7.8543 4.5131 -1.8740 34 1 8.1900 3.2017 -0.6218 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260404816.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:11 Heat of formation + Delta-G solvation = -0.520155 kcal Electronic energy + Delta-G solvation = -18186.973555 eV Core-core repulsion = 15304.716206 eV Total energy + Delta-G solvation = -2882.257349 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -39.59819 -37.60777 -36.04487 -35.26890 -32.85505 -30.80106 -29.71961 -27.16075 -26.74526 -23.66186 -21.90965 -21.42559 -21.02309 -19.10600 -17.35038 -16.33817 -15.79491 -15.42041 -15.30117 -14.73141 -14.55377 -13.66835 -13.37450 -13.14536 -12.72618 -12.44796 -12.05760 -11.51729 -11.40126 -11.08986 -10.90409 -10.83057 -10.66387 -10.51294 -10.45974 -10.44036 -9.89885 -9.75687 -9.38872 -8.97917 -8.71029 -8.38914 -7.68855 -7.48879 -6.00405 -4.04307 1.97207 2.10597 3.25472 3.31605 3.38754 3.40559 3.65913 4.37124 4.47282 4.85946 5.18016 5.27732 5.31736 5.40436 5.52248 5.62196 5.70995 5.90525 5.96465 6.02995 6.05052 6.33182 6.39415 6.52452 6.67551 6.78615 6.87227 6.96408 7.09300 7.16383 7.33585 7.55579 7.82849 7.84691 7.96441 8.34691 9.02318 9.57035 11.05405 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016681 B = 0.008253 C = 0.007402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.159889 B = 3391.770962 C = 3781.870768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.311 6.311 3 C 0.122 3.878 4 C -0.231 4.231 5 C -0.090 4.090 6 C -0.141 4.141 7 C 0.023 3.977 8 C 0.079 3.921 9 H 0.092 0.908 10 C -0.503 4.503 11 H 0.057 0.943 12 C 0.070 3.930 13 N -0.868 5.868 14 Si 0.887 3.113 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.121 4.121 19 C -0.199 4.199 20 C -0.167 4.167 21 C -0.067 4.067 22 Cl -0.052 7.052 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.093 0.907 26 H 0.120 0.880 27 H 0.116 0.884 28 H 0.125 0.875 29 H 0.262 0.738 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.406 0.491 -5.705 10.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.225 6.225 3 C 0.077 3.923 4 C -0.250 4.250 5 C -0.108 4.108 6 C -0.160 4.160 7 C 0.022 3.978 8 C 0.060 3.940 9 H 0.110 0.890 10 C -0.540 4.540 11 H 0.075 0.925 12 C -0.135 4.135 13 N -0.504 5.504 14 Si 0.715 3.285 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.139 4.139 19 C -0.236 4.236 20 C -0.204 4.204 21 C -0.094 4.094 22 Cl -0.023 7.023 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.112 0.888 26 H 0.138 0.862 27 H 0.134 0.866 28 H 0.142 0.858 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.178 -0.016 -5.585 9.903 hybrid contribution -0.155 0.551 1.093 1.233 sum -8.332 0.535 -4.493 9.481 Atomic orbital electron populations 1.22947 0.79439 1.03185 1.00909 1.86133 1.20417 1.26859 1.89055 1.18715 0.90728 0.84413 0.98490 1.20821 0.98908 0.92046 1.13240 1.20857 0.94891 0.96328 0.98756 1.20859 0.92589 0.98580 1.03930 1.20597 0.99813 0.89030 0.88366 1.17957 0.85043 1.00047 0.90938 0.88986 1.20819 1.43914 0.92801 0.96515 0.92454 1.24992 0.94884 0.94891 0.98699 1.69952 1.46039 1.05380 1.29040 0.86682 0.78115 0.79931 0.83821 1.20754 1.21309 1.19859 1.22462 0.93290 1.00666 0.97494 1.22998 1.07659 0.97687 0.95281 1.22714 0.96769 0.98845 1.02080 1.20131 0.87705 0.89483 1.12114 1.98320 1.71845 1.35151 1.96988 0.93057 0.93114 0.88812 0.86164 0.86627 0.85755 0.92832 0.90005 0.89389 0.90670 0.90745 0.88423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.31 -5.56 9.96 -19.50 -0.19 -5.76 16 3 C 0.12 2.40 6.68 -39.19 -0.26 2.14 16 4 C -0.23 -3.95 9.04 -39.44 -0.36 -4.31 16 5 C -0.09 -1.55 10.04 -39.60 -0.40 -1.95 16 6 C -0.14 -2.81 8.59 -39.56 -0.34 -3.15 16 7 C 0.02 0.53 4.77 -104.61 -0.50 0.03 16 8 C 0.08 1.87 2.19 -92.92 -0.20 1.67 16 9 H 0.09 2.40 4.99 -51.93 -0.26 2.14 16 10 C -0.50 -13.03 7.50 -34.44 -0.26 -13.29 16 11 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 12 C 0.07 1.86 5.45 -17.82 -0.10 1.76 16 13 N -0.87 -24.07 12.76 55.43 0.71 -23.36 16 14 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 C -0.12 -2.50 5.05 -90.62 -0.46 -2.96 16 19 C -0.20 -3.74 10.18 -26.69 -0.27 -4.01 16 20 C -0.17 -3.24 9.83 -26.70 -0.26 -3.50 16 21 C -0.07 -1.49 6.33 -39.36 -0.25 -1.74 16 22 Cl -0.05 -1.17 26.55 -51.86 -1.38 -2.55 16 23 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 24 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 25 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.12 1.65 6.30 -52.49 -0.33 1.32 16 27 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.12 2.36 7.86 -52.49 -0.41 1.95 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.08 1.60 7.37 -51.93 -0.38 1.22 16 31 H 0.09 1.72 8.04 -51.93 -0.42 1.31 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.10 2.07 8.10 -51.93 -0.42 1.65 16 LS Contribution 302.18 15.07 4.55 4.55 Total: -1.00 -28.55 302.18 -8.25 -36.80 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -4.25 Total: 2.33 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: -2.66 Total: -27.95 kcal Atomic # 7 Polarization: -24.07 SS G_CDS: 0.71 Total: -23.36 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.19 Total: -5.76 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.38 Total: -2.55 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.55 -8.25 -36.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260404816.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.276 kcal (2) G-P(sol) polarization free energy of solvation -28.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds