Wall clock time and date at job start Mon Mar 30 2020 07:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35924 * 116.99874 * 2 1 4 4 C 1.38711 * 120.05892 * 359.97438 * 3 2 1 5 5 C 1.38151 * 119.95573 * 179.97438 * 4 3 2 6 6 C 1.38271 * 120.07953 * 0.28449 * 5 4 3 7 7 C 1.38252 * 120.11907 * 359.43914 * 6 5 4 8 8 C 1.50695 * 119.98166 * 180.25724 * 7 6 5 9 9 H 1.08997 * 109.47417 * 180.30397 * 8 7 6 10 10 C 1.50696 * 109.47099 * 60.30110 * 8 7 6 11 11 H 1.08003 * 119.99988 * 275.52340 * 10 8 7 12 12 C 1.37875 * 120.00020 * 95.52174 * 10 8 7 13 13 N 1.31512 * 120.00111 * 5.47681 * 12 10 8 14 14 Si 1.86800 * 119.99960 * 185.47638 * 12 10 8 15 15 H 1.48500 * 109.47444 * 89.99763 * 14 12 10 16 16 H 1.48503 * 109.47430 * 210.00065 * 14 12 10 17 17 H 1.48510 * 109.47259 * 329.99970 * 14 12 10 18 18 C 1.53006 * 109.47113 * 300.29957 * 8 7 6 19 19 C 1.52999 * 117.50035 * 246.54230 * 18 8 7 20 20 C 1.52998 * 117.49766 * 177.88293 * 18 8 7 21 21 C 1.38260 * 120.03915 * 0.56078 * 7 6 5 22 22 Cl 1.73596 * 120.03856 * 179.69996 * 21 7 6 23 23 H 1.08996 * 109.46855 * 299.99808 * 1 2 3 24 24 H 1.08994 * 109.47200 * 60.00275 * 1 2 3 25 25 H 1.09006 * 109.46699 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.02122 * 0.02562 * 4 3 2 27 27 H 1.08002 * 119.95695 * 180.02562 * 5 4 3 28 28 H 1.08001 * 119.94263 * 179.72447 * 6 5 4 29 29 H 0.97004 * 120.00094 * 180.02562 * 13 12 10 30 30 H 1.09003 * 115.54800 * 32.21354 * 18 8 7 31 31 H 1.09000 * 117.49323 * 0.02562 * 19 18 8 32 32 H 1.08997 * 117.49471 * 145.01774 * 19 18 8 33 33 H 1.08996 * 117.49951 * 214.98101 * 20 18 8 34 34 H 1.08997 * 117.50007 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2918 2.3752 -0.0005 5 6 1.9212 3.6050 0.0000 6 6 3.3020 3.6768 -0.0049 7 6 4.0570 2.5187 0.0014 8 6 5.5617 2.6006 0.0019 9 1 5.9804 1.5943 0.0018 10 6 6.0242 3.3370 1.2327 11 1 6.0607 4.4164 1.2344 12 6 6.4008 2.6327 2.3566 13 7 6.4597 1.3194 2.3206 14 14 6.8273 3.5440 3.9305 15 1 5.6017 3.7145 4.7515 16 1 7.8322 2.7645 4.6971 17 1 7.3871 4.8778 3.5941 18 6 6.0322 3.3488 -1.2470 19 6 6.8216 2.5556 -2.2903 20 6 7.5359 3.5813 -1.4067 21 6 3.4323 1.2853 0.0009 22 17 4.3803 -0.1690 0.0009 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2132 2.3202 -0.0005 27 1 1.3339 4.5114 0.0000 28 1 3.7917 4.6394 -0.0089 29 1 6.7243 0.8239 3.1115 30 1 5.3612 4.1278 -1.6090 31 1 7.0055 1.5006 -2.0870 32 1 6.6703 2.8130 -3.3386 33 1 7.8543 4.5131 -1.8740 34 1 8.1900 3.2017 -0.6218 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260404816.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:09 Heat of formation + Delta-G solvation = -14.852545 kcal Electronic energy + Delta-G solvation = -18187.595054 eV Core-core repulsion = 15304.716206 eV Total energy + Delta-G solvation = -2882.878848 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.99546 -39.09946 -37.54625 -36.89244 -34.73507 -32.44252 -31.11977 -28.75511 -27.97889 -25.49379 -23.36682 -22.96577 -22.49402 -20.72560 -18.84092 -18.13211 -17.19694 -16.82443 -16.62729 -16.52435 -16.15057 -15.12823 -14.81401 -14.68619 -14.28049 -13.87861 -13.65987 -13.20527 -12.90605 -12.76672 -12.51097 -12.39331 -12.21514 -12.17198 -11.95202 -11.86084 -11.60923 -11.43801 -11.00215 -10.76976 -10.46264 -10.27444 -9.26519 -8.94387 -7.99925 -6.08220 0.48978 0.63133 1.42309 1.44628 1.52420 1.66747 2.42614 2.47983 2.93267 3.25226 3.33901 4.00401 4.12267 4.21015 4.36633 4.41364 4.44858 4.46316 4.53336 4.65357 4.74789 4.82409 4.89724 4.96640 5.20209 5.29376 5.33249 5.42367 5.51925 5.63852 5.75063 5.81711 6.02956 6.13627 6.42100 6.52394 7.04337 7.54444 9.04271 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016681 B = 0.008253 C = 0.007402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.159889 B = 3391.770962 C = 3781.870768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.117 3.883 4 C -0.221 4.221 5 C -0.077 4.077 6 C -0.157 4.157 7 C -0.003 4.003 8 C 0.078 3.922 9 H 0.062 0.938 10 C -0.503 4.503 11 H 0.053 0.947 12 C 0.022 3.978 13 N -0.898 5.898 14 Si 0.940 3.060 15 H -0.283 1.283 16 H -0.290 1.290 17 H -0.266 1.266 18 C -0.137 4.137 19 C -0.185 4.185 20 C -0.164 4.164 21 C -0.100 4.100 22 Cl -0.073 7.073 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.117 0.883 26 H 0.162 0.838 27 H 0.159 0.841 28 H 0.128 0.872 29 H 0.256 0.744 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.679 2.090 -6.403 12.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.071 3.929 4 C -0.240 4.240 5 C -0.094 4.094 6 C -0.175 4.175 7 C -0.004 4.004 8 C 0.059 3.941 9 H 0.080 0.920 10 C -0.541 4.541 11 H 0.071 0.929 12 C -0.179 4.179 13 N -0.535 5.535 14 Si 0.767 3.233 15 H -0.210 1.210 16 H -0.216 1.216 17 H -0.190 1.190 18 C -0.155 4.155 19 C -0.222 4.222 20 C -0.201 4.201 21 C -0.127 4.127 22 Cl -0.044 7.044 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.135 0.865 26 H 0.179 0.821 27 H 0.176 0.824 28 H 0.146 0.854 29 H 0.065 0.935 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.461 1.594 -6.291 12.310 hybrid contribution 0.407 0.037 1.241 1.306 sum -10.054 1.631 -5.050 11.369 Atomic orbital electron populations 1.23350 0.76400 1.05414 1.02369 1.86111 1.23559 1.26338 1.88756 1.18879 0.90109 0.86014 0.97889 1.21293 1.00808 0.90889 1.10974 1.21304 0.93935 0.98121 0.96085 1.20998 0.94024 0.97731 1.04762 1.20519 0.99128 0.90277 0.90468 1.17781 0.86429 0.98426 0.91437 0.92002 1.21067 1.43053 0.92627 0.97385 0.92861 1.25625 0.95523 0.95504 1.01254 1.70097 1.47824 1.06446 1.29171 0.85844 0.77545 0.79127 0.80827 1.20964 1.21593 1.19045 1.22420 0.94162 1.01574 0.97337 1.23002 1.06078 0.96607 0.96515 1.22703 0.95503 1.00212 1.01715 1.20410 0.89077 0.88814 1.14443 1.98295 1.72628 1.36286 1.97225 0.91846 0.91147 0.86501 0.82100 0.82391 0.85411 0.93493 0.88571 0.91092 0.87535 0.87828 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.51 16 2 O -0.33 -11.41 9.96 -92.70 -0.92 -12.33 16 3 C 0.12 4.43 6.68 22.52 0.15 4.58 16 4 C -0.22 -6.75 9.04 22.36 0.20 -6.55 16 5 C -0.08 -2.35 10.04 22.26 0.22 -2.13 16 6 C -0.16 -6.01 8.59 22.28 0.19 -5.82 16 7 C 0.00 -0.11 4.77 -19.86 -0.09 -0.21 16 8 C 0.08 3.79 2.19 -12.29 -0.03 3.76 16 9 H 0.06 3.37 4.99 -2.39 -0.01 3.36 16 10 C -0.50 -26.56 7.50 25.60 0.19 -26.37 16 11 H 0.05 2.77 7.82 -2.91 -0.02 2.75 16 12 C 0.02 1.18 5.45 84.65 0.46 1.64 16 13 N -0.90 -51.66 12.76 21.45 0.27 -51.39 16 14 Si 0.94 43.76 29.54 68.60 2.03 45.78 16 15 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 16 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 C -0.14 -5.64 5.05 -10.79 -0.05 -5.70 16 19 C -0.19 -6.85 10.18 30.62 0.31 -6.54 16 20 C -0.16 -6.31 9.83 30.62 0.30 -6.01 16 21 C -0.10 -4.50 6.33 22.41 0.14 -4.36 16 22 Cl -0.07 -3.42 26.55 -2.72 -0.07 -3.49 16 23 H 0.06 1.19 7.66 -2.39 -0.02 1.17 16 24 H 0.07 1.21 7.66 -2.39 -0.02 1.19 16 25 H 0.12 1.89 8.14 -2.38 -0.02 1.87 16 26 H 0.16 3.54 6.30 -2.91 -0.02 3.52 16 27 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 28 H 0.13 4.68 7.86 -2.91 -0.02 4.66 16 29 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 30 H 0.10 3.65 7.37 -2.39 -0.02 3.63 16 31 H 0.07 2.85 8.04 -2.39 -0.02 2.83 16 32 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 34 H 0.07 3.08 8.10 -2.39 -0.02 3.06 16 Total: -1.00 -63.93 302.18 5.52 -58.41 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 1.10 Total: 15.21 kcal Atomic # 6 Polarization: -55.30 SS G_CDS: 3.11 Total: -52.19 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.27 Total: -51.39 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -0.92 Total: -12.33 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 17 Polarization: -3.42 SS G_CDS: -0.07 Total: -3.49 kcal Total: -63.93 5.52 -58.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260404816.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.556 kcal (2) G-P(sol) polarization free energy of solvation -63.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds