Wall clock time and date at job start Mon Mar 30 2020 08:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00056 * 2 1 4 4 H 1.48501 * 109.46785 * 264.77664 * 3 2 1 5 5 H 1.48504 * 109.47072 * 24.77486 * 3 2 1 6 6 H 1.48495 * 109.47359 * 144.77794 * 3 2 1 7 7 C 1.37879 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00224 * 5.95357 * 7 2 1 9 9 C 1.50700 * 119.99846 * 185.95789 * 7 2 1 10 10 H 1.09004 * 109.57178 * 335.28818 * 9 7 2 11 11 C 1.53117 * 109.52408 * 95.44541 * 9 7 2 12 12 C 1.53045 * 109.27536 * 177.56061 * 11 9 7 13 13 N 1.46845 * 109.52288 * 300.82001 * 12 11 9 14 14 C 1.46842 * 111.19717 * 61.74298 * 13 12 11 15 15 H 1.08997 * 109.45504 * 58.27245 * 14 13 12 16 16 C 1.50706 * 109.46118 * 178.24330 * 14 13 12 17 17 N 1.31873 * 119.62515 * 45.05409 * 16 14 13 18 18 C 1.31858 * 121.73374 * 179.97438 * 17 16 14 19 19 C 1.38230 * 120.79520 * 0.02562 * 18 17 16 20 20 C 1.38606 * 119.17525 * 359.97438 * 19 18 17 21 21 C 1.38303 * 119.62352 * 224.78047 * 16 14 13 22 22 Cl 1.73600 * 120.43519 * 359.97438 * 21 16 14 23 23 C 1.53037 * 109.52651 * 298.25697 * 14 13 12 24 24 H 0.97004 * 120.00109 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.50427 * 57.61978 * 11 9 7 26 26 H 1.09003 * 109.53454 * 297.51969 * 11 9 7 27 27 H 1.08999 * 109.45661 * 180.80420 * 12 11 9 28 28 H 1.08989 * 109.45355 * 60.83176 * 12 11 9 29 29 H 1.00899 * 110.99960 * 185.84226 * 13 12 11 30 30 H 1.07998 * 119.59792 * 180.02562 * 18 17 16 31 31 H 1.07996 * 120.41337 * 180.02562 * 19 18 17 32 32 H 1.07998 * 120.79262 * 180.02562 * 20 19 18 33 33 H 1.08996 * 109.50368 * 179.11884 * 23 14 13 34 34 H 1.09002 * 109.50307 * 299.24016 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6070 1.9826 -1.3943 5 1 1.3958 2.6820 0.5867 6 1 3.4872 1.4746 0.8074 7 6 2.0045 -1.1941 0.0005 8 1 1.4689 -2.1269 -0.0961 9 6 3.5054 -1.1976 0.1360 10 1 3.9055 -0.2446 -0.2102 11 6 3.8862 -1.4094 1.6039 12 6 5.4105 -1.4729 1.7263 13 7 5.9232 -2.5767 0.9047 14 6 5.6106 -2.3714 -0.5153 15 1 6.0411 -1.4273 -0.8490 16 6 6.1905 -3.5019 -1.3257 17 7 6.0454 -4.7444 -0.9085 18 6 6.5352 -5.7649 -1.5848 19 6 7.2250 -5.5653 -2.7659 20 6 7.3983 -4.2734 -3.2373 21 6 6.8639 -3.2249 -2.5016 22 17 7.0434 -1.5867 -3.0472 23 6 4.0924 -2.3347 -0.7047 24 1 -0.4850 0.8401 -0.0004 25 1 3.4533 -2.3438 1.9609 26 1 3.5073 -0.5807 2.2020 27 1 5.6845 -1.6380 2.7682 28 1 5.8417 -0.5331 1.3818 29 1 6.9152 -2.6995 1.0425 30 1 6.3958 -6.7686 -1.2114 31 1 7.6233 -6.4056 -3.3151 32 1 7.9326 -4.0876 -4.1572 33 1 3.8608 -2.1667 -1.7565 34 1 3.6626 -3.2837 -0.3839 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260414624.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:57 Heat of formation + Delta-G solvation = 22.915250 kcal Electronic energy + Delta-G solvation = -18063.901024 eV Core-core repulsion = 15214.952662 eV Total energy + Delta-G solvation = -2848.948362 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 3.16 seconds Orbital eigenvalues (eV) -40.42972 -37.82087 -36.65833 -33.40760 -32.52607 -31.85134 -30.96169 -29.04902 -25.59327 -24.08556 -23.48771 -21.77376 -20.92270 -18.75146 -17.30319 -16.85865 -16.52871 -16.14752 -15.23603 -14.49419 -14.22613 -13.86078 -13.71373 -13.34288 -13.03016 -12.64165 -12.47534 -12.34275 -12.03805 -11.68782 -11.44808 -11.25345 -10.89953 -10.68456 -10.30283 -9.88682 -9.84796 -9.65808 -9.39612 -9.19714 -8.99001 -8.74694 -8.45100 -7.91319 -6.02705 -4.00232 0.86288 1.09494 2.00163 3.31023 3.39239 3.41022 3.63145 4.24532 4.36688 4.46093 4.64476 4.83762 4.91415 5.22265 5.26873 5.39511 5.63070 5.72098 5.82445 5.88925 5.91898 6.00269 6.28453 6.39106 6.42598 6.52696 6.79978 6.93071 7.07377 7.34350 7.51034 7.59491 7.77374 7.86869 7.99459 8.59817 9.04084 9.61163 11.10935 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.023631 B = 0.006206 C = 0.005820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.623408 B = 4510.530622 C = 4809.908519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.070 3.930 3 Si 0.874 3.126 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.506 4.506 8 H 0.073 0.927 9 C 0.017 3.983 10 H 0.026 0.974 11 C -0.108 4.108 12 C 0.057 3.943 13 N -0.665 5.665 14 C 0.128 3.872 15 H 0.056 0.944 16 C 0.159 3.841 17 N -0.435 5.435 18 C 0.101 3.899 19 C -0.173 4.173 20 C -0.069 4.069 21 C -0.091 4.091 22 Cl -0.053 7.053 23 C -0.085 4.085 24 H 0.262 0.738 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.019 0.981 29 H 0.328 0.672 30 H 0.161 0.839 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.055 0.945 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.590 -7.602 -4.924 19.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.190 1.190 7 C -0.544 4.544 8 H 0.091 0.909 9 C -0.002 4.002 10 H 0.044 0.956 11 C -0.147 4.147 12 C -0.072 4.072 13 N -0.296 5.296 14 C 0.018 3.982 15 H 0.073 0.927 16 C 0.019 3.981 17 N -0.143 5.143 18 C -0.057 4.057 19 C -0.193 4.193 20 C -0.096 4.096 21 C -0.121 4.121 22 Cl -0.025 7.025 23 C -0.123 4.123 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.038 0.962 29 H 0.144 0.856 30 H 0.178 0.822 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.073 0.927 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 16.416 -7.877 -4.070 18.657 hybrid contribution 1.545 1.851 -1.233 2.708 sum 17.961 -6.025 -5.303 19.673 Atomic orbital electron populations 1.69917 1.06271 1.26809 1.51012 1.25055 0.94646 0.98828 0.94562 0.86900 0.80249 0.83933 0.78701 1.20322 1.21664 1.18987 1.20986 0.89179 0.94546 1.49639 0.90882 1.19166 0.96656 0.93348 0.91030 0.95600 1.21877 0.91113 1.01485 1.00184 1.22092 0.98395 0.90565 0.96114 1.60157 1.18739 1.45214 1.05494 1.20728 0.98814 0.91394 0.87257 0.92661 1.21407 0.92041 0.93504 0.91109 1.67797 1.16675 0.98125 1.31676 1.23023 0.92720 0.98644 0.91292 1.22136 1.01785 0.96967 0.98407 1.21464 0.97341 0.91506 0.99271 1.21989 1.04391 0.87395 0.98287 1.98378 1.96382 1.18685 1.89015 1.21634 0.88899 1.01661 1.00126 0.92768 0.91713 0.92757 0.91704 0.96249 0.85554 0.82181 0.84205 0.84061 0.92658 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.87 21.80 27.02 -169.99 -4.59 17.20 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.27 -6.30 6.78 56.52 0.38 -5.91 16 7 C -0.51 -14.32 8.86 -34.44 -0.31 -14.63 16 8 H 0.07 2.26 8.06 -52.49 -0.42 1.84 16 9 C 0.02 0.41 1.85 -91.65 -0.17 0.24 16 10 H 0.03 0.63 5.24 -51.93 -0.27 0.35 16 11 C -0.11 -2.33 5.36 -26.65 -0.14 -2.47 16 12 C 0.06 1.01 6.55 -3.83 -0.03 0.99 16 13 N -0.67 -11.39 6.32 -107.99 -0.68 -12.07 16 14 C 0.13 2.28 2.55 -68.87 -0.18 2.11 16 15 H 0.06 0.98 6.37 -51.93 -0.33 0.65 16 16 C 0.16 2.52 5.64 -82.55 -0.47 2.05 16 17 N -0.43 -6.73 10.07 -9.44 -0.10 -6.83 16 18 C 0.10 1.17 11.18 -17.54 -0.20 0.97 16 19 C -0.17 -1.66 10.11 -39.45 -0.40 -2.05 16 20 C -0.07 -0.75 9.98 -39.24 -0.39 -1.14 16 21 C -0.09 -1.25 6.34 -39.35 -0.25 -1.50 16 22 Cl -0.05 -0.73 27.11 -51.86 -1.41 -2.13 16 23 C -0.08 -1.81 4.62 -26.65 -0.12 -1.93 16 24 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 25 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 26 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.02 0.34 8.14 -51.94 -0.42 -0.08 16 29 H 0.33 4.89 8.78 -39.29 -0.35 4.55 16 30 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 32 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 LS Contribution 293.76 15.07 4.43 4.43 Total: -1.00 -31.37 293.76 -8.65 -40.01 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -4.33 Total: 1.86 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -2.74 Total: -15.43 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.00 Total: -45.94 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.59 Total: 17.20 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.41 Total: -2.13 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.37 -8.65 -40.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414624.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.930 kcal (2) G-P(sol) polarization free energy of solvation -31.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.16 seconds