Wall clock time and date at job start Mon Mar 30 2020 08:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00056 * 2 1 4 4 H 1.48501 * 109.46785 * 264.77664 * 3 2 1 5 5 H 1.48504 * 109.47072 * 24.77486 * 3 2 1 6 6 H 1.48495 * 109.47359 * 144.77794 * 3 2 1 7 7 C 1.37879 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00224 * 5.95357 * 7 2 1 9 9 C 1.50700 * 119.99846 * 185.95789 * 7 2 1 10 10 H 1.09004 * 109.57178 * 335.28818 * 9 7 2 11 11 C 1.53117 * 109.52408 * 95.44541 * 9 7 2 12 12 C 1.53045 * 109.27536 * 177.56061 * 11 9 7 13 13 N 1.46845 * 109.52288 * 300.82001 * 12 11 9 14 14 C 1.46842 * 111.19717 * 61.74298 * 13 12 11 15 15 H 1.08997 * 109.45504 * 58.27245 * 14 13 12 16 16 C 1.50706 * 109.46118 * 178.24330 * 14 13 12 17 17 N 1.31873 * 119.62515 * 45.05409 * 16 14 13 18 18 C 1.31858 * 121.73374 * 179.97438 * 17 16 14 19 19 C 1.38230 * 120.79520 * 0.02562 * 18 17 16 20 20 C 1.38606 * 119.17525 * 359.97438 * 19 18 17 21 21 C 1.38303 * 119.62352 * 224.78047 * 16 14 13 22 22 Cl 1.73600 * 120.43519 * 359.97438 * 21 16 14 23 23 C 1.53037 * 109.52651 * 298.25697 * 14 13 12 24 24 H 0.97004 * 120.00109 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.50427 * 57.61978 * 11 9 7 26 26 H 1.09003 * 109.53454 * 297.51969 * 11 9 7 27 27 H 1.08999 * 109.45661 * 180.80420 * 12 11 9 28 28 H 1.08989 * 109.45355 * 60.83176 * 12 11 9 29 29 H 1.00899 * 110.99960 * 185.84226 * 13 12 11 30 30 H 1.07998 * 119.59792 * 180.02562 * 18 17 16 31 31 H 1.07996 * 120.41337 * 180.02562 * 19 18 17 32 32 H 1.07998 * 120.79262 * 180.02562 * 20 19 18 33 33 H 1.08996 * 109.50368 * 179.11884 * 23 14 13 34 34 H 1.09002 * 109.50307 * 299.24016 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6070 1.9826 -1.3943 5 1 1.3958 2.6820 0.5867 6 1 3.4872 1.4746 0.8074 7 6 2.0045 -1.1941 0.0005 8 1 1.4689 -2.1269 -0.0961 9 6 3.5054 -1.1976 0.1360 10 1 3.9055 -0.2446 -0.2102 11 6 3.8862 -1.4094 1.6039 12 6 5.4105 -1.4729 1.7263 13 7 5.9232 -2.5767 0.9047 14 6 5.6106 -2.3714 -0.5153 15 1 6.0411 -1.4273 -0.8490 16 6 6.1905 -3.5019 -1.3257 17 7 6.0454 -4.7444 -0.9085 18 6 6.5352 -5.7649 -1.5848 19 6 7.2250 -5.5653 -2.7659 20 6 7.3983 -4.2734 -3.2373 21 6 6.8639 -3.2249 -2.5016 22 17 7.0434 -1.5867 -3.0472 23 6 4.0924 -2.3347 -0.7047 24 1 -0.4850 0.8401 -0.0004 25 1 3.4533 -2.3438 1.9609 26 1 3.5073 -0.5807 2.2020 27 1 5.6845 -1.6380 2.7682 28 1 5.8417 -0.5331 1.3818 29 1 6.9152 -2.6995 1.0425 30 1 6.3958 -6.7686 -1.2114 31 1 7.6233 -6.4056 -3.3151 32 1 7.9326 -4.0876 -4.1572 33 1 3.8608 -2.1667 -1.7565 34 1 3.6626 -3.2837 -0.3839 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260414624.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:56 Heat of formation + Delta-G solvation = 1.133250 kcal Electronic energy + Delta-G solvation = -18064.845562 eV Core-core repulsion = 15214.952662 eV Total energy + Delta-G solvation = -2849.892901 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.45603 -39.31392 -37.66324 -35.26769 -33.75262 -32.99500 -32.81169 -30.32791 -27.55152 -25.32870 -24.46113 -23.40094 -22.33550 -20.47178 -19.04288 -18.13092 -17.81057 -17.23831 -16.36899 -16.27561 -15.63018 -15.22892 -14.93464 -14.86680 -14.42671 -14.28576 -14.02215 -13.53656 -13.25604 -13.07159 -13.01553 -12.84511 -12.60725 -12.36653 -11.89792 -11.77277 -11.45951 -11.14990 -10.97397 -10.71228 -10.66251 -10.31886 -9.82749 -9.28307 -8.28734 -6.31439 -0.08166 0.20855 1.01277 1.33222 1.33736 1.45455 2.34508 2.67857 3.04110 3.12822 3.27209 3.82018 3.85743 4.02413 4.17959 4.20133 4.29871 4.39109 4.44565 4.57570 4.68652 4.74219 4.86395 4.92879 4.97130 5.05570 5.17885 5.31960 5.52325 5.60033 5.65052 5.75683 6.08872 6.34254 6.56341 6.74754 7.01454 7.33268 8.88799 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.023631 B = 0.006206 C = 0.005820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.623408 B = 4510.530622 C = 4809.908519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.012 3.988 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.242 1.242 7 C -0.513 4.513 8 H 0.025 0.975 9 C 0.016 3.984 10 H 0.028 0.972 11 C -0.106 4.106 12 C 0.065 3.935 13 N -0.670 5.670 14 C 0.138 3.862 15 H 0.058 0.942 16 C 0.131 3.869 17 N -0.471 5.471 18 C 0.091 3.909 19 C -0.149 4.149 20 C -0.068 4.068 21 C -0.101 4.101 22 Cl -0.060 7.060 23 C -0.075 4.075 24 H 0.265 0.735 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.092 0.908 28 H 0.029 0.971 29 H 0.345 0.655 30 H 0.188 0.812 31 H 0.185 0.815 32 H 0.172 0.828 33 H 0.042 0.958 34 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.999 -7.950 -5.612 23.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.185 4.185 3 Si 0.764 3.236 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.166 1.166 7 C -0.551 4.551 8 H 0.043 0.957 9 C -0.004 4.004 10 H 0.047 0.953 11 C -0.144 4.144 12 C -0.064 4.064 13 N -0.302 5.302 14 C 0.028 3.972 15 H 0.075 0.925 16 C -0.008 4.008 17 N -0.179 5.179 18 C -0.067 4.067 19 C -0.169 4.169 20 C -0.094 4.094 21 C -0.130 4.130 22 Cl -0.031 7.031 23 C -0.113 4.113 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.111 0.889 28 H 0.047 0.953 29 H 0.164 0.836 30 H 0.205 0.795 31 H 0.202 0.798 32 H 0.189 0.811 33 H 0.061 0.939 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 19.858 -8.240 -4.753 22.019 hybrid contribution 0.439 1.746 -1.073 2.096 sum 20.297 -6.494 -5.826 22.093 Atomic orbital electron populations 1.70072 1.08258 1.27991 1.52824 1.25942 0.95444 1.02922 0.94192 0.85839 0.79601 0.78706 0.79475 1.19353 1.21188 1.16578 1.21243 0.91837 0.92814 1.49174 0.95679 1.19147 0.93545 0.94423 0.93235 0.95345 1.21722 0.94462 1.00261 0.97964 1.21980 0.95036 0.91383 0.97983 1.60058 1.20084 1.44933 1.05127 1.20427 0.95721 0.92968 0.88128 0.92483 1.21018 0.94358 0.93216 0.92169 1.67683 1.18050 0.98718 1.33490 1.23585 0.92328 0.98811 0.91943 1.22603 0.99331 0.97776 0.97177 1.21894 0.96569 0.91109 0.99800 1.22094 1.04908 0.87921 0.98108 1.98371 1.96414 1.19375 1.88931 1.21373 0.92161 0.99186 0.98614 0.92588 0.93550 0.93350 0.88938 0.95272 0.83582 0.79508 0.79785 0.81095 0.93936 0.93768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.95 13.96 21.45 0.30 -60.66 16 2 C 0.01 0.69 5.47 84.65 0.46 1.15 16 3 Si 0.94 45.14 27.02 68.60 1.85 46.99 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.24 -10.67 6.78 99.48 0.67 -10.00 16 7 C -0.51 -30.45 8.86 25.60 0.23 -30.22 16 8 H 0.02 1.67 8.06 -2.91 -0.02 1.65 16 9 C 0.02 0.75 1.85 -11.46 -0.02 0.73 16 10 H 0.03 1.36 5.24 -2.38 -0.01 1.35 16 11 C -0.11 -4.56 5.36 30.65 0.16 -4.39 16 12 C 0.07 2.18 6.55 86.33 0.57 2.74 16 13 N -0.67 -22.03 6.32 -495.57 -3.13 -25.17 16 14 C 0.14 4.84 2.55 44.19 0.11 4.95 16 15 H 0.06 1.97 6.37 -2.39 -0.02 1.95 16 16 C 0.13 4.02 5.64 42.57 0.24 4.26 16 17 N -0.47 -14.01 10.07 -183.79 -1.85 -15.86 16 18 C 0.09 1.85 11.18 84.69 0.95 2.79 16 19 C -0.15 -2.21 10.11 22.36 0.23 -1.99 16 20 C -0.07 -1.22 9.98 22.49 0.22 -0.99 16 21 C -0.10 -2.58 6.34 22.42 0.14 -2.44 16 22 Cl -0.06 -1.53 27.11 -2.72 -0.07 -1.61 16 23 C -0.07 -3.28 4.62 30.65 0.14 -3.14 16 24 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 25 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.35 9.57 8.78 -89.70 -0.79 8.78 16 30 H 0.19 2.58 8.06 -2.91 -0.02 2.56 16 31 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 32 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 33 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -72.01 293.76 0.82 -71.19 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.29 Total: 11.66 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 3.43 Total: -26.55 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -4.68 Total: -101.69 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.85 Total: 46.99 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.07 Total: -1.61 kcal Total: -72.01 0.82 -71.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414624.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.326 kcal (2) G-P(sol) polarization free energy of solvation -72.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds