Wall clock time and date at job start Mon Mar 30 2020 08:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00216 * 2 1 4 4 H 1.48500 * 109.47389 * 89.99774 * 3 2 1 5 5 H 1.48494 * 109.47083 * 210.00048 * 3 2 1 6 6 H 1.48503 * 109.46845 * 330.00070 * 3 2 1 7 7 C 1.37876 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00076 * 173.33390 * 7 2 1 9 9 C 1.50697 * 120.00082 * 353.33585 * 7 2 1 10 10 H 1.08999 * 109.52130 * 328.80298 * 9 7 2 11 11 C 1.53120 * 109.52525 * 208.66975 * 9 7 2 12 12 C 1.53035 * 109.27762 * 297.75281 * 11 9 7 13 13 N 1.46854 * 109.52301 * 300.81631 * 12 11 9 14 14 C 1.46847 * 111.19503 * 61.74298 * 13 12 11 15 15 H 1.09004 * 109.46406 * 58.27649 * 14 13 12 16 16 C 1.50703 * 109.45981 * 178.25229 * 14 13 12 17 17 N 1.31866 * 119.62595 * 45.00338 * 16 14 13 18 18 C 1.31854 * 121.73973 * 179.97438 * 17 16 14 19 19 C 1.38232 * 120.79152 * 0.02562 * 18 17 16 20 20 C 1.38607 * 119.17569 * 359.97438 * 19 18 17 21 21 C 1.38310 * 119.62328 * 224.72684 * 16 14 13 22 22 Cl 1.73596 * 120.43572 * 0.02562 * 21 16 14 23 23 C 1.53032 * 109.52595 * 298.25726 * 14 13 12 24 24 H 0.96989 * 120.00376 * 174.72544 * 1 2 3 25 25 H 1.08997 * 109.49850 * 57.69192 * 11 9 7 26 26 H 1.08999 * 109.50171 * 177.81227 * 11 9 7 27 27 H 1.08992 * 109.46705 * 60.83448 * 12 11 9 28 28 H 1.09004 * 109.45969 * 180.80369 * 12 11 9 29 29 H 1.00897 * 110.99438 * 297.65150 * 13 12 11 30 30 H 1.07999 * 119.60785 * 179.97438 * 18 17 16 31 31 H 1.08000 * 120.41184 * 180.02562 * 19 18 17 32 32 H 1.08003 * 120.79883 * 179.97438 * 20 19 18 33 33 H 1.08997 * 109.50538 * 299.24058 * 23 14 13 34 34 H 1.08998 * 109.50410 * 179.11991 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 1.4000 5 1 3.5467 1.4401 -0.7000 6 1 1.4466 2.6526 -0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0791 -1.1973 -0.1080 9 6 1.2586 -2.4946 0.1526 10 1 0.3734 -2.3370 0.7686 11 6 2.1678 -3.5311 0.8187 12 6 3.3793 -3.7919 -0.0793 13 7 2.9246 -4.2817 -1.3869 14 6 2.0884 -3.2839 -2.0661 15 1 2.6536 -2.3602 -2.1903 16 6 1.6797 -3.8081 -3.4187 17 7 1.2522 -5.0502 -3.5344 18 6 0.8838 -5.5515 -4.6969 19 6 0.9340 -4.7848 -5.8460 20 6 1.3779 -3.4742 -5.7650 21 6 1.7519 -2.9793 -4.5235 22 17 2.3098 -1.3435 -4.3607 23 6 0.8384 -3.0079 -1.2276 24 1 -0.4850 -0.8364 -0.0772 25 1 2.5048 -3.1528 1.7837 26 1 1.6157 -4.4597 0.9638 27 1 3.9385 -2.8660 -0.2127 28 1 4.0215 -4.5401 0.3856 29 1 2.4364 -5.1599 -1.2942 30 1 0.5394 -6.5736 -4.7522 31 1 0.6304 -5.2015 -6.7950 32 1 1.4282 -2.8519 -6.6463 33 1 0.2654 -3.9282 -1.1146 34 1 0.2256 -2.2557 -1.7244 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260414626.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:06 Heat of formation + Delta-G solvation = 15.485609 kcal Electronic energy + Delta-G solvation = -18461.577999 eV Core-core repulsion = 15612.307463 eV Total energy + Delta-G solvation = -2849.270536 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.27937 -37.96824 -36.32987 -33.39880 -32.44487 -31.71844 -29.99362 -28.91890 -24.57544 -24.15400 -23.32434 -22.18663 -21.00278 -19.38987 -17.11157 -16.48910 -16.29655 -15.81685 -14.54548 -14.27394 -13.91843 -13.77915 -13.64363 -13.32296 -13.14179 -12.64079 -12.27501 -11.94334 -11.75408 -11.47665 -11.26032 -10.95794 -10.72989 -10.34426 -10.17201 -10.06893 -9.98392 -9.67257 -9.53749 -9.22094 -8.68324 -8.45759 -8.25279 -7.51758 -6.30884 -4.02019 1.06827 1.24946 2.32165 3.44265 3.46673 3.62177 3.78817 4.44640 4.55168 4.64721 4.78745 5.01521 5.20065 5.37282 5.38776 5.61528 5.79338 5.93986 5.98952 6.09654 6.17444 6.23715 6.31172 6.51054 6.66109 6.72856 6.83687 6.91734 7.07825 7.32367 7.45053 7.75223 8.06564 8.11275 8.27579 8.48789 8.91259 9.69536 11.06811 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.019841 B = 0.008183 C = 0.006609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.870622 B = 3420.866216 C = 4235.496733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.024 3.976 3 Si 1.058 2.942 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.586 4.586 8 H 0.052 0.948 9 C 0.029 3.971 10 H 0.033 0.967 11 C -0.140 4.140 12 C 0.066 3.934 13 N -0.677 5.677 14 C 0.139 3.861 15 H 0.116 0.884 16 C 0.169 3.831 17 N -0.464 5.464 18 C 0.100 3.900 19 C -0.178 4.178 20 C -0.069 4.069 21 C -0.087 4.087 22 Cl -0.040 7.040 23 C -0.124 4.124 24 H 0.270 0.730 25 H 0.056 0.944 26 H 0.032 0.968 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.336 0.664 30 H 0.158 0.842 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.030 0.970 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.829 -8.431 -10.282 13.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.180 4.180 3 Si 0.887 3.113 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.212 1.212 7 C -0.623 4.623 8 H 0.070 0.930 9 C 0.011 3.989 10 H 0.051 0.949 11 C -0.179 4.179 12 C -0.063 4.063 13 N -0.306 5.306 14 C 0.029 3.971 15 H 0.134 0.866 16 C 0.030 3.970 17 N -0.173 5.173 18 C -0.058 4.058 19 C -0.198 4.198 20 C -0.096 4.096 21 C -0.116 4.116 22 Cl -0.011 7.011 23 C -0.164 4.164 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.154 0.846 30 H 0.175 0.825 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.049 0.951 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.241 -6.966 -9.778 12.436 hybrid contribution -0.723 -1.073 -0.459 1.372 sum 2.518 -8.039 -10.237 13.258 Atomic orbital electron populations 1.70742 1.06939 1.30844 1.46285 1.25667 0.96437 1.02265 0.93650 0.83708 0.74964 0.75819 0.76838 1.21455 1.21370 1.21207 1.21905 0.94584 0.91361 1.54497 0.92966 1.18889 0.95351 0.93964 0.90742 0.94920 1.22179 0.97997 0.98161 0.99583 1.21933 0.96596 1.00056 0.87752 1.60772 1.42771 1.05598 1.21426 1.20622 0.94777 0.95424 0.86276 0.86598 1.21567 0.91523 0.88285 0.95582 1.67599 1.10188 1.12555 1.26964 1.22840 0.95081 1.00059 0.87784 1.22036 1.02908 0.94368 1.00532 1.21485 0.95896 0.95853 0.96323 1.21939 1.04837 0.89162 0.95664 1.98406 1.87515 1.17348 1.97812 1.22267 0.95734 0.98620 0.99826 0.91908 0.92539 0.94949 0.90234 0.92606 0.84625 0.82519 0.84399 0.84124 0.95089 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.00 13.55 55.43 0.75 -26.25 16 2 C 0.02 0.68 5.45 -17.82 -0.10 0.58 16 3 Si 1.06 25.09 29.91 -169.99 -5.08 20.00 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.59 -15.54 6.87 -34.44 -0.24 -15.78 16 8 H 0.05 1.39 6.21 -52.48 -0.33 1.07 16 9 C 0.03 0.72 2.24 -91.65 -0.21 0.51 16 10 H 0.03 0.88 6.96 -51.93 -0.36 0.52 16 11 C -0.14 -2.92 5.57 -26.65 -0.15 -3.07 16 12 C 0.07 1.27 6.35 -3.83 -0.02 1.24 16 13 N -0.68 -13.01 6.46 -107.98 -0.70 -13.71 16 14 C 0.14 2.86 2.35 -68.88 -0.16 2.70 16 15 H 0.12 2.63 5.53 -51.93 -0.29 2.34 16 16 C 0.17 3.12 5.73 -82.55 -0.47 2.64 16 17 N -0.46 -7.78 9.65 -9.45 -0.09 -7.88 16 18 C 0.10 1.29 11.18 -17.54 -0.20 1.10 16 19 C -0.18 -2.03 10.11 -39.45 -0.40 -2.43 16 20 C -0.07 -0.91 9.98 -39.24 -0.39 -1.30 16 21 C -0.09 -1.46 6.34 -39.35 -0.25 -1.71 16 22 Cl -0.04 -0.70 27.11 -51.86 -1.41 -2.11 16 23 C -0.12 -2.82 4.74 -26.65 -0.13 -2.95 16 24 H 0.27 7.98 6.46 -40.82 -0.26 7.72 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 1.67 6.42 -51.93 -0.33 1.33 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.34 6.23 8.28 -39.29 -0.33 5.91 16 30 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 33 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 1.41 7.78 -51.93 -0.40 1.00 16 LS Contribution 289.30 15.07 4.36 4.36 Total: -1.00 -29.51 289.30 -8.93 -38.44 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -4.06 Total: 5.60 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -2.71 Total: -18.46 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.04 Total: -47.83 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.08 Total: 20.00 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.41 Total: -2.11 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.51 -8.93 -38.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414626.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.928 kcal (2) G-P(sol) polarization free energy of solvation -29.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds