Wall clock time and date at job start Mon Mar 30 2020 08:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00216 * 2 1 4 4 H 1.48500 * 109.47389 * 89.99774 * 3 2 1 5 5 H 1.48494 * 109.47083 * 210.00048 * 3 2 1 6 6 H 1.48503 * 109.46845 * 330.00070 * 3 2 1 7 7 C 1.37876 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00076 * 173.33390 * 7 2 1 9 9 C 1.50697 * 120.00082 * 353.33585 * 7 2 1 10 10 H 1.08999 * 109.52130 * 328.80298 * 9 7 2 11 11 C 1.53120 * 109.52525 * 208.66975 * 9 7 2 12 12 C 1.53035 * 109.27762 * 297.75281 * 11 9 7 13 13 N 1.46854 * 109.52301 * 300.81631 * 12 11 9 14 14 C 1.46847 * 111.19503 * 61.74298 * 13 12 11 15 15 H 1.09004 * 109.46406 * 58.27649 * 14 13 12 16 16 C 1.50703 * 109.45981 * 178.25229 * 14 13 12 17 17 N 1.31866 * 119.62595 * 45.00338 * 16 14 13 18 18 C 1.31854 * 121.73973 * 179.97438 * 17 16 14 19 19 C 1.38232 * 120.79152 * 0.02562 * 18 17 16 20 20 C 1.38607 * 119.17569 * 359.97438 * 19 18 17 21 21 C 1.38310 * 119.62328 * 224.72684 * 16 14 13 22 22 Cl 1.73596 * 120.43572 * 0.02562 * 21 16 14 23 23 C 1.53032 * 109.52595 * 298.25726 * 14 13 12 24 24 H 0.96989 * 120.00376 * 174.72544 * 1 2 3 25 25 H 1.08997 * 109.49850 * 57.69192 * 11 9 7 26 26 H 1.08999 * 109.50171 * 177.81227 * 11 9 7 27 27 H 1.08992 * 109.46705 * 60.83448 * 12 11 9 28 28 H 1.09004 * 109.45969 * 180.80369 * 12 11 9 29 29 H 1.00897 * 110.99438 * 297.65150 * 13 12 11 30 30 H 1.07999 * 119.60785 * 179.97438 * 18 17 16 31 31 H 1.08000 * 120.41184 * 180.02562 * 19 18 17 32 32 H 1.08003 * 120.79883 * 179.97438 * 20 19 18 33 33 H 1.08997 * 109.50538 * 299.24058 * 23 14 13 34 34 H 1.08998 * 109.50410 * 179.11991 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 1.4000 5 1 3.5467 1.4401 -0.7000 6 1 1.4466 2.6526 -0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0791 -1.1973 -0.1080 9 6 1.2586 -2.4946 0.1526 10 1 0.3734 -2.3370 0.7686 11 6 2.1678 -3.5311 0.8187 12 6 3.3793 -3.7919 -0.0793 13 7 2.9246 -4.2817 -1.3869 14 6 2.0884 -3.2839 -2.0661 15 1 2.6536 -2.3602 -2.1903 16 6 1.6797 -3.8081 -3.4187 17 7 1.2522 -5.0502 -3.5344 18 6 0.8838 -5.5515 -4.6969 19 6 0.9340 -4.7848 -5.8460 20 6 1.3779 -3.4742 -5.7650 21 6 1.7519 -2.9793 -4.5235 22 17 2.3098 -1.3435 -4.3607 23 6 0.8384 -3.0079 -1.2276 24 1 -0.4850 -0.8364 -0.0772 25 1 2.5048 -3.1528 1.7837 26 1 1.6157 -4.4597 0.9638 27 1 3.9385 -2.8660 -0.2127 28 1 4.0215 -4.5401 0.3856 29 1 2.4364 -5.1599 -1.2942 30 1 0.5394 -6.5736 -4.7522 31 1 0.6304 -5.2015 -6.7950 32 1 1.4282 -2.8519 -6.6463 33 1 0.2654 -3.9282 -1.1146 34 1 0.2256 -2.2557 -1.7244 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260414626.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:05 Heat of formation + Delta-G solvation = -3.718529 kcal Electronic energy + Delta-G solvation = -18462.410753 eV Core-core repulsion = 15612.307463 eV Total energy + Delta-G solvation = -2850.103290 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.50212 -39.59529 -37.60311 -35.29166 -33.78253 -32.97217 -31.86301 -30.33974 -26.63213 -25.54315 -24.48599 -23.87508 -22.44416 -21.25647 -18.50542 -18.09198 -17.66520 -17.05849 -15.98133 -15.79955 -15.63584 -15.48457 -15.22552 -14.91954 -14.45977 -14.10121 -13.71580 -13.58344 -13.07050 -13.04129 -12.94062 -12.67992 -12.47674 -12.12498 -12.00825 -11.88072 -11.61206 -11.27915 -10.77258 -10.57006 -10.45278 -10.31000 -9.88471 -9.15650 -8.53229 -6.22709 -0.05755 0.17418 1.08883 1.49926 1.57450 1.73631 2.57274 2.66284 3.18327 3.25876 3.39531 3.81806 3.85213 4.02071 4.14673 4.30771 4.37015 4.39783 4.44058 4.56671 4.61406 4.84714 4.93951 5.00167 5.01204 5.04030 5.20764 5.29229 5.35981 5.56483 5.61656 6.11288 6.16789 6.30629 6.58554 6.71228 6.91670 7.55425 8.84883 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.019841 B = 0.008183 C = 0.006609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.870622 B = 3420.866216 C = 4235.496733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.026 4.026 3 Si 1.096 2.904 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.289 1.289 7 C -0.578 4.578 8 H 0.050 0.950 9 C 0.021 3.979 10 H -0.003 1.003 11 C -0.134 4.134 12 C 0.072 3.928 13 N -0.669 5.669 14 C 0.150 3.850 15 H 0.090 0.910 16 C 0.137 3.863 17 N -0.486 5.486 18 C 0.096 3.904 19 C -0.154 4.154 20 C -0.068 4.068 21 C -0.107 4.107 22 Cl -0.062 7.062 23 C -0.108 4.108 24 H 0.256 0.744 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.343 0.657 30 H 0.196 0.804 31 H 0.188 0.812 32 H 0.169 0.831 33 H 0.033 0.967 34 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.610 -10.295 -12.181 16.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.224 4.224 3 Si 0.920 3.080 4 H -0.200 1.200 5 H -0.196 1.196 6 H -0.216 1.216 7 C -0.616 4.616 8 H 0.068 0.932 9 C 0.002 3.998 10 H 0.015 0.985 11 C -0.173 4.173 12 C -0.058 4.058 13 N -0.298 5.298 14 C 0.039 3.961 15 H 0.108 0.892 16 C 0.000 4.000 17 N -0.195 5.195 18 C -0.062 4.062 19 C -0.173 4.173 20 C -0.095 4.095 21 C -0.136 4.136 22 Cl -0.033 7.033 23 C -0.148 4.148 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.162 0.838 30 H 0.213 0.787 31 H 0.205 0.795 32 H 0.187 0.813 33 H 0.052 0.948 34 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 4.041 -8.849 -11.668 15.191 hybrid contribution -1.017 -0.656 0.037 1.211 sum 3.024 -9.505 -11.631 15.322 Atomic orbital electron populations 1.70854 1.07948 1.30021 1.49156 1.26888 0.96475 1.05709 0.93364 0.83203 0.74556 0.72556 0.77670 1.19974 1.19576 1.21551 1.22130 0.94477 0.92290 1.52682 0.93154 1.18914 0.94563 0.94668 0.91626 0.98503 1.22101 0.98171 0.97575 0.99441 1.21908 0.95916 1.00323 0.87630 1.60756 1.42411 1.05519 1.21091 1.20260 0.92975 0.95097 0.87773 0.89182 1.21155 0.94393 0.89731 0.94763 1.67522 1.10919 1.11779 1.29308 1.23591 0.93732 1.01791 0.87072 1.22580 0.99723 0.92965 1.02025 1.21913 0.94770 0.97101 0.95672 1.22124 1.06339 0.88171 0.96984 1.98389 1.87943 1.19050 1.97958 1.22010 0.96622 0.97283 0.98869 0.93393 0.92758 0.93353 0.92157 0.89207 0.83836 0.78692 0.79490 0.81340 0.94826 0.96061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.11 13.55 21.45 0.29 -57.82 16 2 C -0.03 -1.50 5.45 84.65 0.46 -1.04 16 3 Si 1.10 51.29 29.91 68.60 2.05 53.34 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 7 C -0.58 -31.60 6.87 25.60 0.18 -31.42 16 8 H 0.05 2.74 6.21 -2.91 -0.02 2.72 16 9 C 0.02 1.07 2.24 -11.46 -0.03 1.04 16 10 H 0.00 -0.19 6.96 -2.39 -0.02 -0.20 16 11 C -0.13 -5.57 5.57 30.65 0.17 -5.40 16 12 C 0.07 2.69 6.35 86.32 0.55 3.23 16 13 N -0.67 -25.21 6.46 -495.55 -3.20 -28.41 16 14 C 0.15 6.24 2.35 44.19 0.10 6.34 16 15 H 0.09 4.21 5.53 -2.39 -0.01 4.20 16 16 C 0.14 5.00 5.73 42.57 0.24 5.24 16 17 N -0.49 -15.40 9.65 -183.80 -1.77 -17.17 16 18 C 0.10 2.11 11.18 84.69 0.95 3.05 16 19 C -0.15 -2.77 10.11 22.36 0.23 -2.54 16 20 C -0.07 -1.60 9.98 22.49 0.22 -1.37 16 21 C -0.11 -3.51 6.34 22.42 0.14 -3.37 16 22 Cl -0.06 -2.23 27.11 -2.72 -0.07 -2.30 16 23 C -0.11 -5.07 4.74 30.65 0.15 -4.92 16 24 H 0.26 16.07 6.46 -92.72 -0.60 15.47 16 25 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.06 2.51 6.42 -2.39 -0.02 2.50 16 28 H 0.09 2.79 8.14 -2.38 -0.02 2.77 16 29 H 0.34 12.25 8.28 -89.70 -0.74 11.50 16 30 H 0.20 2.67 8.06 -2.91 -0.02 2.65 16 31 H 0.19 1.58 8.06 -2.91 -0.02 1.56 16 32 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 33 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.02 1.11 7.78 -2.39 -0.02 1.09 16 Total: -1.00 -67.47 289.30 1.20 -66.26 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.55 Total: 17.25 kcal Atomic # 6 Polarization: -34.51 SS G_CDS: 3.36 Total: -31.15 kcal Atomic # 7 Polarization: -98.72 SS G_CDS: -4.68 Total: -103.40 kcal Atomic # 14 Polarization: 51.29 SS G_CDS: 2.05 Total: 53.34 kcal Atomic # 17 Polarization: -2.23 SS G_CDS: -0.07 Total: -2.30 kcal Total: -67.47 1.20 -66.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414626.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.543 kcal (2) G-P(sol) polarization free energy of solvation -67.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds