Wall clock time and date at job start Mon Mar 30 2020 08:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00535 * 2 1 4 4 H 1.48500 * 109.46875 * 269.99880 * 3 2 1 5 5 H 1.48499 * 109.46822 * 29.99716 * 3 2 1 6 6 H 1.48501 * 109.47200 * 149.99359 * 3 2 1 7 7 C 1.37885 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99829 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00161 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.52432 * 300.12686 * 9 7 2 11 11 C 1.53122 * 109.57324 * 60.28231 * 9 7 2 12 12 C 1.53036 * 109.27526 * 62.28269 * 11 9 7 13 13 N 1.46843 * 109.52357 * 59.18056 * 12 11 9 14 14 C 1.46848 * 111.19990 * 298.25416 * 13 12 11 15 15 H 1.08999 * 109.45224 * 301.73588 * 14 13 12 16 16 C 1.50698 * 109.46537 * 181.75716 * 14 13 12 17 17 N 1.31877 * 119.62848 * 314.92670 * 16 14 13 18 18 C 1.31847 * 121.73719 * 179.97438 * 17 16 14 19 19 C 1.38233 * 120.79435 * 0.02562 * 18 17 16 20 20 C 1.38605 * 119.17718 * 0.02562 * 19 18 17 21 21 C 1.38305 * 119.62374 * 134.94806 * 16 14 13 22 22 Cl 1.73601 * 120.43447 * 359.72466 * 21 16 14 23 23 C 1.53044 * 109.51934 * 61.74106 * 14 13 12 24 24 H 0.97006 * 119.99491 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.50587 * 182.22190 * 11 9 7 26 26 H 1.09001 * 109.50451 * 302.30350 * 11 9 7 27 27 H 1.09004 * 109.46452 * 179.19533 * 12 11 9 28 28 H 1.08999 * 109.46749 * 299.16457 * 12 11 9 29 29 H 1.00903 * 111.00673 * 174.16109 * 13 12 11 30 30 H 1.07998 * 119.60266 * 180.02562 * 18 17 16 31 31 H 1.07998 * 120.41279 * 179.97438 * 19 18 17 32 32 H 1.08004 * 120.79669 * 180.02562 * 20 19 18 33 33 H 1.09000 * 109.50157 * 60.76766 * 23 14 13 34 34 H 1.09004 * 109.50136 * 180.84336 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7002 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6219 -2.5567 0.8889 11 6 0.3755 -2.5861 -1.2528 12 6 1.2687 -2.5663 -2.4952 13 7 2.2007 -3.7001 -2.4478 14 6 3.0838 -3.6130 -1.2777 15 1 3.6387 -2.6754 -1.3108 16 6 4.0501 -4.7692 -1.2907 17 7 3.6095 -5.9842 -1.5530 18 6 4.4182 -7.0254 -1.5757 19 6 5.7691 -6.8779 -1.3223 20 6 6.2701 -5.6165 -1.0415 21 6 5.3890 -4.5442 -1.0270 22 17 5.9614 -2.9405 -0.6892 23 6 2.2447 -3.6640 0.0012 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1987 -3.5124 -1.2322 26 1 -0.3061 -1.7359 -1.2803 27 1 0.6495 -2.6424 -3.3891 28 1 1.8324 -1.6338 -2.5226 29 1 2.7360 -3.7642 -3.3007 30 1 4.0203 -8.0052 -1.7949 31 1 6.4258 -7.7350 -1.3421 32 1 7.3212 -5.4712 -0.8401 33 1 1.7000 -4.6072 0.0416 34 1 2.8992 -3.5842 0.8692 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260414627.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:08 Heat of formation + Delta-G solvation = 5.839723 kcal Electronic energy + Delta-G solvation = -18347.980211 eV Core-core repulsion = 15498.291398 eV Total energy + Delta-G solvation = -2849.688813 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.41384 -39.27909 -37.60857 -35.13143 -33.52482 -32.84335 -32.38960 -30.15132 -27.20278 -25.35285 -24.40459 -23.71242 -22.38240 -20.44298 -18.19617 -17.80608 -17.72439 -17.15979 -16.53982 -16.19490 -15.44863 -15.11423 -15.06158 -14.55697 -14.29643 -13.99698 -13.89701 -13.47001 -13.18400 -13.00766 -12.84229 -12.75688 -12.45687 -12.37758 -11.99417 -11.65381 -11.22836 -11.01155 -10.80896 -10.71036 -10.39383 -10.25509 -9.78411 -9.14116 -8.05353 -6.15912 -0.04436 0.23213 1.07664 1.37690 1.39921 1.48466 2.43258 2.71701 3.19810 3.24038 3.37424 3.88572 3.91017 4.05522 4.31121 4.39242 4.48747 4.50922 4.63521 4.73006 4.85786 4.94031 5.02591 5.06311 5.18425 5.23952 5.41035 5.59162 5.62075 5.64416 5.81042 6.00938 6.31433 6.42598 6.66109 6.92694 7.04846 7.49858 8.99909 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.024392 B = 0.007098 C = 0.005918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.646168 B = 3943.836988 C = 4730.510344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.019 3.981 3 Si 0.938 3.062 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.510 4.510 8 H 0.051 0.949 9 C 0.041 3.959 10 H -0.008 1.008 11 C -0.099 4.099 12 C 0.084 3.916 13 N -0.666 5.666 14 C 0.148 3.852 15 H 0.056 0.944 16 C 0.130 3.870 17 N -0.470 5.470 18 C 0.091 3.909 19 C -0.150 4.150 20 C -0.068 4.068 21 C -0.104 4.104 22 Cl -0.063 7.063 23 C -0.077 4.077 24 H 0.259 0.741 25 H 0.026 0.974 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.017 0.983 29 H 0.335 0.665 30 H 0.191 0.809 31 H 0.186 0.814 32 H 0.170 0.830 33 H 0.044 0.956 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.270 -12.589 -4.603 18.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.180 4.180 3 Si 0.764 3.236 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.548 4.548 8 H 0.069 0.931 9 C 0.022 3.978 10 H 0.010 0.990 11 C -0.137 4.137 12 C -0.045 4.045 13 N -0.298 5.298 14 C 0.037 3.963 15 H 0.074 0.926 16 C -0.008 4.008 17 N -0.179 5.179 18 C -0.066 4.066 19 C -0.169 4.169 20 C -0.095 4.095 21 C -0.133 4.133 22 Cl -0.034 7.034 23 C -0.116 4.116 24 H 0.068 0.932 25 H 0.045 0.955 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.035 0.965 29 H 0.153 0.847 30 H 0.208 0.792 31 H 0.203 0.797 32 H 0.188 0.812 33 H 0.063 0.937 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 11.820 -12.840 -4.423 18.004 hybrid contribution 1.509 2.220 0.203 2.692 sum 13.329 -10.620 -4.221 17.557 Atomic orbital electron populations 1.70001 1.06956 1.26819 1.51723 1.25582 0.95461 1.01657 0.95272 0.85857 0.78935 0.80561 0.78197 1.20208 1.20973 1.19639 1.21340 0.92589 0.91330 1.49553 0.93076 1.18690 0.93036 0.92530 0.93507 0.99028 1.21398 0.98062 0.98885 0.95387 1.21648 0.94323 0.90524 0.98010 1.60244 1.20909 1.44594 1.04004 1.20243 0.91060 0.92502 0.92465 0.92606 1.21162 0.90608 0.93707 0.95292 1.67705 1.39530 0.98449 1.12176 1.23624 0.90898 0.98252 0.93854 1.22598 0.97084 0.98077 0.99187 1.21887 1.00952 0.90904 0.95709 1.22142 0.95092 0.88485 1.07593 1.98385 1.88501 1.22944 1.93589 1.21357 0.97313 0.98195 0.94696 0.93154 0.95541 0.91512 0.91235 0.96484 0.84736 0.79225 0.79674 0.81250 0.93690 0.94167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.06 11.33 21.45 0.24 -52.82 16 2 C 0.02 1.04 5.30 84.66 0.45 1.49 16 3 Si 0.94 44.04 29.54 68.60 2.03 46.07 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.51 -27.99 6.74 25.60 0.17 -27.82 16 8 H 0.05 2.79 6.87 -2.91 -0.02 2.77 16 9 C 0.04 2.14 2.60 -11.46 -0.03 2.11 16 10 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 11 C -0.10 -4.91 5.41 30.65 0.17 -4.74 16 12 C 0.08 3.63 6.34 86.33 0.55 4.18 16 13 N -0.67 -26.19 6.32 -495.56 -3.13 -29.33 16 14 C 0.15 5.93 2.34 44.19 0.10 6.03 16 15 H 0.06 2.43 5.00 -2.39 -0.01 2.42 16 16 C 0.13 4.41 5.64 42.57 0.24 4.65 16 17 N -0.47 -14.64 10.07 -183.80 -1.85 -16.49 16 18 C 0.09 1.92 11.18 84.69 0.95 2.87 16 19 C -0.15 -2.38 10.11 22.36 0.23 -2.16 16 20 C -0.07 -1.37 9.98 22.49 0.22 -1.15 16 21 C -0.10 -3.00 6.34 22.42 0.14 -2.85 16 22 Cl -0.06 -1.94 27.10 -2.72 -0.07 -2.02 16 23 C -0.08 -3.51 4.82 30.65 0.15 -3.36 16 24 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 25 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.07 3.67 6.05 -2.39 -0.01 3.65 16 27 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 28 H 0.02 0.80 7.31 -2.39 -0.02 0.79 16 29 H 0.34 11.72 8.78 -89.69 -0.79 10.93 16 30 H 0.19 2.61 8.06 -2.91 -0.02 2.59 16 31 H 0.19 1.24 8.06 -2.91 -0.02 1.22 16 32 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 33 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 Total: -1.00 -64.88 289.69 0.88 -64.00 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.33 Total: 11.34 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 3.34 Total: -20.75 kcal Atomic # 7 Polarization: -93.89 SS G_CDS: -4.74 Total: -98.63 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -0.07 Total: -2.02 kcal Total: -64.88 0.88 -64.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414627.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.838 kcal (2) G-P(sol) polarization free energy of solvation -64.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds