Wall clock time and date at job start Mon Mar 30 2020 06:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35921 * 116.99794 * 2 1 4 4 C 1.38746 * 120.04003 * 359.97438 * 3 2 1 5 5 C 1.38126 * 119.95546 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.97935 * 180.02562 * 5 4 3 7 7 C 1.38389 * 120.04107 * 0.02562 * 5 4 3 8 8 Cl 1.73602 * 119.95857 * 180.02562 * 7 5 4 9 9 C 1.38345 * 120.08631 * 359.97438 * 7 5 4 10 10 C 1.50701 * 119.98016 * 180.02562 * 9 7 5 11 11 C 1.50709 * 115.54683 * 61.92849 * 10 9 7 12 12 H 1.08002 * 119.99724 * 270.97773 * 11 10 9 13 13 C 1.37877 * 120.00005 * 90.98565 * 11 10 9 14 14 N 1.31512 * 119.99739 * 184.96514 * 13 11 10 15 15 Si 1.86802 * 119.99881 * 4.96404 * 13 11 10 16 16 H 1.48501 * 109.47139 * 86.10815 * 15 13 11 17 17 H 1.48500 * 109.46944 * 206.10907 * 15 13 11 18 18 H 1.48499 * 109.47085 * 326.10714 * 15 13 11 19 19 C 1.52997 * 117.50048 * 276.25864 * 10 9 7 20 20 C 1.52992 * 117.50131 * 207.59803 * 10 9 7 21 21 C 1.38163 * 120.04293 * 359.97438 * 9 7 5 22 22 H 1.08999 * 109.46813 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46718 * 299.99781 * 1 2 3 24 24 H 1.08997 * 109.47195 * 60.00002 * 1 2 3 25 25 H 1.07997 * 120.02670 * 0.25620 * 4 3 2 26 26 H 1.09001 * 109.47048 * 89.99751 * 6 5 4 27 27 H 1.09002 * 109.46946 * 209.99520 * 6 5 4 28 28 H 1.08996 * 109.46826 * 329.99375 * 6 5 4 29 29 H 0.97005 * 119.99767 * 180.02562 * 14 13 11 30 30 H 1.09000 * 117.49622 * 359.97438 * 19 10 9 31 31 H 1.08995 * 117.49762 * 145.01845 * 19 10 9 32 32 H 1.09002 * 117.50399 * 214.98231 * 20 10 9 33 33 H 1.09001 * 117.50006 * 359.97413 * 20 10 9 34 34 H 1.07996 * 120.02239 * 180.02562 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2912 2.3752 -0.0005 5 6 1.9201 3.6050 0.0000 6 6 1.1007 4.8698 0.0000 7 6 3.3021 3.6764 0.0005 8 17 4.0902 5.2232 0.0019 9 6 4.0565 2.5168 0.0011 10 6 5.5614 2.5973 0.0022 11 6 6.1752 3.2710 1.2025 12 1 6.3368 4.3388 1.1985 13 6 6.5306 2.5240 2.3056 14 7 6.9751 3.1221 3.3892 15 14 6.3808 0.6626 2.2607 16 1 7.6152 0.0805 1.6753 17 1 6.1971 0.1474 3.6414 18 1 5.2109 0.2800 1.4299 19 6 6.2599 2.7829 -1.3462 20 6 6.3316 1.4342 -0.6259 21 6 3.4311 1.2848 0.0016 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8900 25 1 0.2127 2.3199 0.0032 26 1 0.9027 5.1744 1.0277 27 1 1.6503 5.6588 -0.5134 28 1 0.1565 4.6909 -0.5143 29 1 7.2255 2.5965 4.1652 30 1 5.6311 2.8463 -2.2343 31 1 7.1637 3.3919 -1.3652 32 1 7.2825 1.1564 -0.1713 33 1 5.7499 0.6104 -1.0396 34 1 4.0204 0.3797 0.0024 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260433623.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:29 Heat of formation + Delta-G solvation = -13.631077 kcal Electronic energy + Delta-G solvation = -18346.255372 eV Core-core repulsion = 15463.429491 eV Total energy + Delta-G solvation = -2882.825881 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.29348 -39.39311 -37.78586 -36.77998 -34.22842 -33.30200 -30.75980 -28.74401 -27.81898 -27.35810 -24.05553 -23.47637 -22.34676 -20.60861 -18.91856 -18.02563 -17.45535 -17.15350 -16.80295 -16.59089 -15.72727 -15.05537 -14.90363 -14.73943 -14.58387 -14.25491 -13.53370 -13.34385 -13.13553 -13.04475 -12.84978 -12.73388 -12.62141 -12.18292 -12.04036 -11.98348 -11.57617 -11.31745 -11.27022 -11.04814 -10.66411 -10.32560 -9.50500 -8.91871 -8.24275 -6.28988 0.32430 0.37736 1.35124 1.40977 1.51720 1.57271 2.36681 2.40698 2.65943 3.11954 3.21959 3.77914 3.78989 4.12059 4.29561 4.34561 4.40485 4.42724 4.43957 4.45473 4.71875 4.73861 4.80263 4.82535 4.84229 5.02080 5.10096 5.17515 5.30746 5.38132 5.44817 5.62278 5.67791 5.78758 6.39878 6.45758 6.80690 7.38978 8.89599 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016242 B = 0.009906 C = 0.007559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.549116 B = 2825.922673 C = 3703.449680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.334 6.334 3 C 0.129 3.871 4 C -0.208 4.208 5 C -0.046 4.046 6 C -0.113 4.113 7 C -0.079 4.079 8 Cl -0.071 7.071 9 C 0.012 3.988 10 C 0.014 3.986 11 C -0.464 4.464 12 H 0.052 0.948 13 C 0.023 3.977 14 N -0.945 5.945 15 Si 0.922 3.078 16 H -0.270 1.270 17 H -0.310 1.310 18 H -0.223 1.223 19 C -0.149 4.149 20 C -0.197 4.197 21 C -0.177 4.177 22 H 0.120 0.880 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.167 0.833 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.262 0.738 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.419 -3.556 -9.528 18.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.248 6.248 3 C 0.083 3.917 4 C -0.227 4.227 5 C -0.047 4.047 6 C -0.169 4.169 7 C -0.106 4.106 8 Cl -0.042 7.042 9 C 0.010 3.990 10 C 0.013 3.987 11 C -0.501 4.501 12 H 0.071 0.929 13 C -0.174 4.174 14 N -0.585 5.585 15 Si 0.748 3.252 16 H -0.196 1.196 17 H -0.238 1.238 18 H -0.146 1.146 19 C -0.187 4.187 20 C -0.234 4.234 21 C -0.196 4.196 22 H 0.138 0.862 23 H 0.082 0.918 24 H 0.090 0.910 25 H 0.184 0.816 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.116 0.884 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.118 0.882 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -15.215 -3.628 -9.365 18.231 hybrid contribution 0.577 -0.418 0.715 1.010 sum -14.637 -4.046 -8.650 17.477 Atomic orbital electron populations 1.23401 0.76159 1.05699 1.02533 1.86057 1.23816 1.26356 1.88616 1.19019 0.91664 0.85172 0.95804 1.21164 1.01136 0.89890 1.10480 1.19871 0.90990 0.97212 0.96634 1.20900 0.99629 0.92905 1.03489 1.20656 0.92383 0.86688 1.10852 1.98304 1.81094 1.27796 1.96962 1.19374 0.95496 0.90921 0.93176 1.17988 0.86726 1.00002 0.94009 1.20380 1.37574 0.94696 0.97449 0.92940 1.25742 0.94317 1.02731 0.94610 1.70036 1.46526 1.37529 1.04372 0.86219 0.81034 0.81524 0.76380 1.19553 1.23845 1.14586 1.22861 1.02271 0.98610 0.94910 1.23090 1.02190 0.92463 1.05668 1.20388 0.92267 0.97646 1.09275 0.86165 0.91776 0.91046 0.81553 0.90231 0.91160 0.88435 0.92872 0.88646 0.89596 0.90205 0.88242 0.85368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -9.56 10.50 -92.66 -0.97 -10.53 16 3 C 0.13 4.25 6.69 22.50 0.15 4.40 16 4 C -0.21 -5.88 8.69 22.36 0.19 -5.68 16 5 C -0.05 -1.46 5.88 -19.85 -0.12 -1.58 16 6 C -0.11 -2.68 9.61 71.24 0.68 -2.00 16 7 C -0.08 -3.13 6.26 22.33 0.14 -2.99 16 8 Cl -0.07 -2.84 24.79 -2.72 -0.07 -2.91 16 9 C 0.01 0.50 5.14 -19.86 -0.10 0.39 16 10 C 0.01 0.63 0.49 -53.67 -0.03 0.60 16 11 C -0.46 -25.98 8.37 25.60 0.21 -25.77 16 12 H 0.05 3.25 7.35 -2.91 -0.02 3.23 16 13 C 0.02 1.37 5.47 84.66 0.46 1.83 16 14 N -0.94 -59.58 13.96 21.45 0.30 -59.28 16 15 Si 0.92 45.09 24.81 68.60 1.70 46.79 16 16 H -0.27 -12.64 6.91 99.48 0.69 -11.95 16 17 H -0.31 -15.62 7.11 99.48 0.71 -14.92 16 18 H -0.22 -9.97 4.09 99.48 0.41 -9.56 16 19 C -0.15 -5.97 9.94 30.62 0.30 -5.67 16 20 C -0.20 -8.11 6.75 30.61 0.21 -7.90 16 21 C -0.18 -6.93 8.29 22.36 0.19 -6.74 16 22 H 0.12 1.41 8.14 -2.39 -0.02 1.40 16 23 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16 24 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 25 H 0.17 3.26 6.30 -2.91 -0.02 3.24 16 26 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.07 1.74 6.90 -2.39 -0.02 1.72 16 28 H 0.10 1.64 8.08 -2.39 -0.02 1.63 16 29 H 0.26 15.72 8.31 -92.70 -0.77 14.94 16 30 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 31 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 32 H 0.08 3.45 6.30 -2.39 -0.02 3.44 16 33 H 0.10 3.63 6.94 -2.39 -0.02 3.61 16 34 H 0.13 5.06 5.29 -2.91 -0.02 5.04 16 Total: -1.00 -68.51 286.94 5.17 -63.34 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.79 Total: 12.31 kcal Atomic # 6 Polarization: -53.13 SS G_CDS: 3.41 Total: -49.72 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.30 Total: -59.28 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.97 Total: -10.53 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.70 Total: 46.79 kcal Atomic # 17 Polarization: -2.84 SS G_CDS: -0.07 Total: -2.91 kcal Total: -68.51 5.17 -63.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260433623.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.713 kcal (2) G-P(sol) polarization free energy of solvation -68.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds