Wall clock time and date at job start Mon Mar 30 2020 06:53:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42908 * 1
3 3 C 1.35921 * 116.99794 * 2 1
4 4 C 1.38746 * 120.04003 * 359.97438 * 3 2 1
5 5 C 1.38126 * 119.95546 * 179.97438 * 4 3 2
6 6 C 1.50701 * 119.97935 * 180.02562 * 5 4 3
7 7 C 1.38389 * 120.04107 * 0.02562 * 5 4 3
8 8 Cl 1.73602 * 119.95857 * 180.02562 * 7 5 4
9 9 C 1.38345 * 120.08631 * 359.97438 * 7 5 4
10 10 C 1.50701 * 119.98016 * 180.02562 * 9 7 5
11 11 C 1.50709 * 115.54683 * 61.92849 * 10 9 7
12 12 H 1.08002 * 119.99724 * 270.97773 * 11 10 9
13 13 C 1.37877 * 120.00005 * 90.98565 * 11 10 9
14 14 N 1.31512 * 119.99739 * 184.96514 * 13 11 10
15 15 Si 1.86802 * 119.99881 * 4.96404 * 13 11 10
16 16 H 1.48501 * 109.47139 * 86.10815 * 15 13 11
17 17 H 1.48500 * 109.46944 * 206.10907 * 15 13 11
18 18 H 1.48499 * 109.47085 * 326.10714 * 15 13 11
19 19 C 1.52997 * 117.50048 * 276.25864 * 10 9 7
20 20 C 1.52992 * 117.50131 * 207.59803 * 10 9 7
21 21 C 1.38163 * 120.04293 * 359.97438 * 9 7 5
22 22 H 1.08999 * 109.46813 * 180.02562 * 1 2 3
23 23 H 1.09004 * 109.46718 * 299.99781 * 1 2 3
24 24 H 1.08997 * 109.47195 * 60.00002 * 1 2 3
25 25 H 1.07997 * 120.02670 * 0.25620 * 4 3 2
26 26 H 1.09001 * 109.47048 * 89.99751 * 6 5 4
27 27 H 1.09002 * 109.46946 * 209.99520 * 6 5 4
28 28 H 1.08996 * 109.46826 * 329.99375 * 6 5 4
29 29 H 0.97005 * 119.99767 * 180.02562 * 14 13 11
30 30 H 1.09000 * 117.49622 * 359.97438 * 19 10 9
31 31 H 1.08995 * 117.49762 * 145.01845 * 19 10 9
32 32 H 1.09002 * 117.50399 * 214.98231 * 20 10 9
33 33 H 1.09001 * 117.50006 * 359.97413 * 20 10 9
34 34 H 1.07996 * 120.02239 * 180.02562 * 21 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0461 1.2111 0.0000
4 6 1.2912 2.3752 -0.0005
5 6 1.9201 3.6050 0.0000
6 6 1.1007 4.8698 0.0000
7 6 3.3021 3.6764 0.0005
8 17 4.0902 5.2232 0.0019
9 6 4.0565 2.5168 0.0011
10 6 5.5614 2.5973 0.0022
11 6 6.1752 3.2710 1.2025
12 1 6.3368 4.3388 1.1985
13 6 6.5306 2.5240 2.3056
14 7 6.9751 3.1221 3.3892
15 14 6.3808 0.6626 2.2607
16 1 7.6152 0.0805 1.6753
17 1 6.1971 0.1474 3.6414
18 1 5.2109 0.2800 1.4299
19 6 6.2599 2.7829 -1.3462
20 6 6.3316 1.4342 -0.6259
21 6 3.4311 1.2848 0.0016
22 1 -0.3633 -1.0277 0.0005
23 1 -0.3633 0.5138 0.8901
24 1 -0.3633 0.5138 -0.8900
25 1 0.2127 2.3199 0.0032
26 1 0.9027 5.1744 1.0277
27 1 1.6503 5.6588 -0.5134
28 1 0.1565 4.6909 -0.5143
29 1 7.2255 2.5965 4.1652
30 1 5.6311 2.8463 -2.2343
31 1 7.1637 3.3919 -1.3652
32 1 7.2825 1.1564 -0.1713
33 1 5.7499 0.6104 -1.0396
34 1 4.0204 0.3797 0.0024
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260433623.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:53:29
Heat of formation + Delta-G solvation = -13.631077 kcal
Electronic energy + Delta-G solvation = -18346.255372 eV
Core-core repulsion = 15463.429491 eV
Total energy + Delta-G solvation = -2882.825881 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 266.081 amu
Computer time = 1.60 seconds
Orbital eigenvalues (eV)
-41.29348 -39.39311 -37.78586 -36.77998 -34.22842 -33.30200 -30.75980 -28.74401
-27.81898 -27.35810 -24.05553 -23.47637 -22.34676 -20.60861 -18.91856 -18.02563
-17.45535 -17.15350 -16.80295 -16.59089 -15.72727 -15.05537 -14.90363 -14.73943
-14.58387 -14.25491 -13.53370 -13.34385 -13.13553 -13.04475 -12.84978 -12.73388
-12.62141 -12.18292 -12.04036 -11.98348 -11.57617 -11.31745 -11.27022 -11.04814
-10.66411 -10.32560 -9.50500 -8.91871 -8.24275 -6.28988 0.32430 0.37736
1.35124 1.40977 1.51720 1.57271 2.36681 2.40698 2.65943 3.11954
3.21959 3.77914 3.78989 4.12059 4.29561 4.34561 4.40485 4.42724
4.43957 4.45473 4.71875 4.73861 4.80263 4.82535 4.84229 5.02080
5.10096 5.17515 5.30746 5.38132 5.44817 5.62278 5.67791 5.78758
6.39878 6.45758 6.80690 7.38978 8.89599
Molecular weight = 266.08amu
Principal moments of inertia in cm(-1)
A = 0.016242 B = 0.009906 C = 0.007559
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1723.549116 B = 2825.922673 C = 3703.449680
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.016 3.984
2 O -0.334 6.334
3 C 0.129 3.871
4 C -0.208 4.208
5 C -0.046 4.046
6 C -0.113 4.113
7 C -0.079 4.079
8 Cl -0.071 7.071
9 C 0.012 3.988
10 C 0.014 3.986
11 C -0.464 4.464
12 H 0.052 0.948
13 C 0.023 3.977
14 N -0.945 5.945
15 Si 0.922 3.078
16 H -0.270 1.270
17 H -0.310 1.310
18 H -0.223 1.223
19 C -0.149 4.149
20 C -0.197 4.197
21 C -0.177 4.177
22 H 0.120 0.880
23 H 0.064 0.936
24 H 0.071 0.929
25 H 0.167 0.833
26 H 0.079 0.921
27 H 0.069 0.931
28 H 0.097 0.903
29 H 0.262 0.738
30 H 0.095 0.905
31 H 0.086 0.914
32 H 0.080 0.920
33 H 0.099 0.901
34 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.419 -3.556 -9.528 18.471
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 O -0.248 6.248
3 C 0.083 3.917
4 C -0.227 4.227
5 C -0.047 4.047
6 C -0.169 4.169
7 C -0.106 4.106
8 Cl -0.042 7.042
9 C 0.010 3.990
10 C 0.013 3.987
11 C -0.501 4.501
12 H 0.071 0.929
13 C -0.174 4.174
14 N -0.585 5.585
15 Si 0.748 3.252
16 H -0.196 1.196
17 H -0.238 1.238
18 H -0.146 1.146
19 C -0.187 4.187
20 C -0.234 4.234
21 C -0.196 4.196
22 H 0.138 0.862
23 H 0.082 0.918
24 H 0.090 0.910
25 H 0.184 0.816
26 H 0.098 0.902
27 H 0.088 0.912
28 H 0.116 0.884
29 H 0.071 0.929
30 H 0.114 0.886
31 H 0.104 0.896
32 H 0.098 0.902
33 H 0.118 0.882
34 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges -15.215 -3.628 -9.365 18.231
hybrid contribution 0.577 -0.418 0.715 1.010
sum -14.637 -4.046 -8.650 17.477
Atomic orbital electron populations
1.23401 0.76159 1.05699 1.02533 1.86057 1.23816 1.26356 1.88616
1.19019 0.91664 0.85172 0.95804 1.21164 1.01136 0.89890 1.10480
1.19871 0.90990 0.97212 0.96634 1.20900 0.99629 0.92905 1.03489
1.20656 0.92383 0.86688 1.10852 1.98304 1.81094 1.27796 1.96962
1.19374 0.95496 0.90921 0.93176 1.17988 0.86726 1.00002 0.94009
1.20380 1.37574 0.94696 0.97449 0.92940 1.25742 0.94317 1.02731
0.94610 1.70036 1.46526 1.37529 1.04372 0.86219 0.81034 0.81524
0.76380 1.19553 1.23845 1.14586 1.22861 1.02271 0.98610 0.94910
1.23090 1.02190 0.92463 1.05668 1.20388 0.92267 0.97646 1.09275
0.86165 0.91776 0.91046 0.81553 0.90231 0.91160 0.88435 0.92872
0.88646 0.89596 0.90205 0.88242 0.85368
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.27 9.81 113.37 1.11 1.38 16
2 O -0.33 -9.56 10.50 -92.66 -0.97 -10.53 16
3 C 0.13 4.25 6.69 22.50 0.15 4.40 16
4 C -0.21 -5.88 8.69 22.36 0.19 -5.68 16
5 C -0.05 -1.46 5.88 -19.85 -0.12 -1.58 16
6 C -0.11 -2.68 9.61 71.24 0.68 -2.00 16
7 C -0.08 -3.13 6.26 22.33 0.14 -2.99 16
8 Cl -0.07 -2.84 24.79 -2.72 -0.07 -2.91 16
9 C 0.01 0.50 5.14 -19.86 -0.10 0.39 16
10 C 0.01 0.63 0.49 -53.67 -0.03 0.60 16
11 C -0.46 -25.98 8.37 25.60 0.21 -25.77 16
12 H 0.05 3.25 7.35 -2.91 -0.02 3.23 16
13 C 0.02 1.37 5.47 84.66 0.46 1.83 16
14 N -0.94 -59.58 13.96 21.45 0.30 -59.28 16
15 Si 0.92 45.09 24.81 68.60 1.70 46.79 16
16 H -0.27 -12.64 6.91 99.48 0.69 -11.95 16
17 H -0.31 -15.62 7.11 99.48 0.71 -14.92 16
18 H -0.22 -9.97 4.09 99.48 0.41 -9.56 16
19 C -0.15 -5.97 9.94 30.62 0.30 -5.67 16
20 C -0.20 -8.11 6.75 30.61 0.21 -7.90 16
21 C -0.18 -6.93 8.29 22.36 0.19 -6.74 16
22 H 0.12 1.41 8.14 -2.39 -0.02 1.40 16
23 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16
24 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16
25 H 0.17 3.26 6.30 -2.91 -0.02 3.24 16
26 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16
27 H 0.07 1.74 6.90 -2.39 -0.02 1.72 16
28 H 0.10 1.64 8.08 -2.39 -0.02 1.63 16
29 H 0.26 15.72 8.31 -92.70 -0.77 14.94 16
30 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16
31 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16
32 H 0.08 3.45 6.30 -2.39 -0.02 3.44 16
33 H 0.10 3.63 6.94 -2.39 -0.02 3.61 16
34 H 0.13 5.06 5.29 -2.91 -0.02 5.04 16
Total: -1.00 -68.51 286.94 5.17 -63.34
By element:
Atomic # 1 Polarization: 11.51 SS G_CDS: 0.79 Total: 12.31 kcal
Atomic # 6 Polarization: -53.13 SS G_CDS: 3.41 Total: -49.72 kcal
Atomic # 7 Polarization: -59.58 SS G_CDS: 0.30 Total: -59.28 kcal
Atomic # 8 Polarization: -9.56 SS G_CDS: -0.97 Total: -10.53 kcal
Atomic # 14 Polarization: 45.09 SS G_CDS: 1.70 Total: 46.79 kcal
Atomic # 17 Polarization: -2.84 SS G_CDS: -0.07 Total: -2.91 kcal
Total: -68.51 5.17 -63.34 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260433623.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.713 kcal
(2) G-P(sol) polarization free energy of solvation -68.510 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.797 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.166 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.344 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.631 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.60 seconds