Wall clock time and date at job start Mon Mar 30 2020 06:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99918 * 2 1 4 4 H 1.48508 * 109.47160 * 240.00558 * 3 2 1 5 5 H 1.48505 * 109.47127 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47362 * 120.00077 * 3 2 1 7 7 C 1.37867 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00235 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99983 * 359.97438 * 7 2 1 10 10 C 1.50707 * 109.47379 * 180.02562 * 9 7 2 11 11 C 1.38259 * 119.99279 * 270.27705 * 10 9 7 12 12 C 1.38222 * 120.02347 * 180.27367 * 11 10 9 13 13 C 1.38233 * 120.01513 * 359.70299 * 12 11 10 14 14 C 1.50703 * 120.00745 * 180.02562 * 13 12 11 15 15 H 1.08996 * 110.43663 * 180.67477 * 14 13 12 16 16 C 1.54812 * 110.48818 * 58.13143 * 14 13 12 17 17 C 1.55225 * 101.98879 * 220.51903 * 16 14 13 18 18 O 1.44378 * 103.56268 * 36.88174 * 17 16 14 19 19 C 1.43749 * 106.97889 * 320.01145 * 18 17 16 20 20 C 1.38326 * 119.98737 * 0.02562 * 13 12 11 21 21 Cl 1.73596 * 120.01848 * 180.02562 * 20 13 12 22 22 C 1.38190 * 119.99076 * 89.99529 * 10 9 7 23 23 H 0.97007 * 120.00055 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47105 * 59.99920 * 9 7 2 25 25 H 1.08999 * 109.47290 * 300.00166 * 9 7 2 26 26 H 1.08003 * 119.98870 * 0.02562 * 11 10 9 27 27 H 1.08002 * 119.99233 * 179.72532 * 12 11 10 28 28 H 1.09005 * 110.91044 * 338.64270 * 16 14 13 29 29 H 1.09002 * 110.90586 * 102.24261 * 16 14 13 30 30 H 1.08993 * 110.51538 * 278.38649 * 17 16 14 31 31 H 1.08993 * 110.77795 * 155.49780 * 17 16 14 32 32 H 1.08994 * 109.87611 * 267.09352 * 19 18 17 33 33 H 1.08995 * 109.88063 * 145.93808 * 19 18 17 34 34 H 1.08002 * 120.01169 * 0.03206 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1939 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6838 -4.1662 -1.1980 12 6 3.5777 -5.2205 -1.1987 13 6 4.0234 -5.7500 -0.0022 14 6 4.9984 -6.8992 -0.0032 15 1 5.2341 -7.1992 1.0178 16 6 6.2890 -6.5141 -0.7665 17 6 6.5994 -7.8160 -1.5526 18 8 5.2933 -8.3068 -1.9240 19 6 4.4275 -8.0901 -0.7972 20 6 3.5743 -5.2250 1.1962 21 17 4.1341 -5.8889 2.6993 22 6 2.6793 -4.1696 1.1963 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6247 -2.5570 0.8896 26 1 2.3365 -3.7523 -2.1331 27 1 3.9282 -5.6304 -2.1344 28 1 6.1049 -5.6832 -1.4477 29 1 7.0947 -6.2749 -0.0723 30 1 7.1122 -8.5350 -0.9138 31 1 7.1945 -7.5995 -2.4397 32 1 4.4083 -8.9799 -0.1681 33 1 3.4206 -7.8564 -1.1430 34 1 2.3280 -3.7594 2.1317 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260436238.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:54 Heat of formation + Delta-G solvation = -47.808832 kcal Electronic energy + Delta-G solvation = -17498.374131 eV Core-core repulsion = 14614.066192 eV Total energy + Delta-G solvation = -2884.307940 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.02625 -38.38089 -36.21144 -34.09478 -32.68236 -30.62510 -30.25526 -29.15113 -26.65969 -23.71978 -22.67784 -22.37809 -21.23767 -19.82922 -16.84171 -16.44166 -16.34087 -15.54092 -15.15944 -14.99319 -14.48546 -14.40262 -13.43332 -13.30408 -12.95090 -12.88471 -12.38879 -11.97732 -11.67639 -11.59845 -11.40357 -11.20660 -11.15657 -10.95816 -10.79339 -10.69131 -10.47061 -10.31659 -9.81568 -9.62767 -9.48799 -8.48767 -8.33809 -7.88547 -6.10872 -4.15561 1.66100 1.78393 2.44490 3.28389 3.32833 3.35717 3.85868 4.09256 4.40630 4.56710 4.68085 4.86207 5.07028 5.10766 5.23584 5.27764 5.41092 5.58799 5.60566 5.66565 5.75037 5.87326 5.90115 5.96545 6.10177 6.19567 6.47218 6.70800 6.78437 6.89212 6.99003 7.33391 7.48019 7.68377 7.84094 8.21765 8.89005 9.48899 10.98953 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.025215 B = 0.004808 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.162228 B = 5821.672085 C = 6223.986112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.048 3.952 10 C -0.020 4.020 11 C -0.116 4.116 12 C -0.103 4.103 13 C -0.102 4.102 14 C -0.083 4.083 15 H 0.095 0.905 16 C -0.147 4.147 17 C 0.046 3.954 18 O -0.379 6.379 19 C 0.055 3.945 20 C -0.027 4.027 21 Cl -0.089 7.089 22 C -0.113 4.113 23 H 0.264 0.736 24 H 0.033 0.967 25 H 0.031 0.969 26 H 0.126 0.874 27 H 0.124 0.876 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.136 -14.101 -0.114 17.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.021 4.021 11 C -0.134 4.134 12 C -0.122 4.122 13 C -0.103 4.103 14 C -0.101 4.101 15 H 0.113 0.887 16 C -0.184 4.184 17 C -0.031 4.031 18 O -0.298 6.298 19 C -0.022 4.022 20 C -0.054 4.054 21 Cl -0.060 7.060 22 C -0.132 4.132 23 H 0.073 0.927 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.144 0.856 27 H 0.142 0.858 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.961 -14.140 -0.176 17.297 hybrid contribution 0.550 1.084 0.465 1.301 sum 10.512 -13.056 0.289 16.764 Atomic orbital electron populations 1.69942 1.06043 1.27084 1.50054 1.24993 0.94886 0.99277 0.94987 0.86585 0.79550 0.82716 0.78784 1.20115 1.21157 1.20119 1.20979 0.93006 0.89733 1.51654 0.92470 1.18393 0.92439 0.89328 0.98747 1.20711 0.95552 0.94699 0.91106 1.21211 0.97530 0.95934 0.98743 1.20865 0.97894 0.96859 0.96547 1.19187 1.00469 0.98854 0.91761 1.21531 0.93891 0.93447 1.01267 0.88666 1.23310 0.96910 0.98771 0.99422 1.23596 0.86114 0.93974 0.99388 1.88861 1.20195 1.83438 1.37293 1.23298 0.95101 0.96099 0.87654 1.20772 1.00750 0.98446 0.85398 1.98306 1.88895 1.85414 1.33436 1.20995 0.97401 0.95143 0.99616 0.92669 0.94906 0.95054 0.85628 0.85827 0.89803 0.90095 0.92375 0.89014 0.92327 0.89292 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.03 9.09 -34.44 -0.31 -14.35 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.05 1.18 5.10 -29.03 -0.15 1.03 16 10 C -0.02 -0.42 5.07 -104.63 -0.53 -0.95 16 11 C -0.12 -2.12 9.70 -39.58 -0.38 -2.50 16 12 C -0.10 -1.62 8.10 -39.59 -0.32 -1.94 16 13 C -0.10 -1.54 4.75 -104.59 -0.50 -2.04 16 14 C -0.08 -1.02 3.14 -90.24 -0.28 -1.30 16 15 H 0.10 1.14 6.25 -51.93 -0.32 0.82 16 16 C -0.15 -1.59 6.62 -24.60 -0.16 -1.76 16 17 C 0.05 0.45 7.72 38.34 0.30 0.75 16 18 O -0.38 -4.79 11.52 -35.23 -0.41 -5.20 16 19 C 0.06 0.66 7.09 37.73 0.27 0.92 16 20 C -0.03 -0.45 6.31 -39.50 -0.25 -0.70 16 21 Cl -0.09 -1.29 27.04 -51.86 -1.40 -2.69 16 22 C -0.11 -2.15 9.49 -39.55 -0.38 -2.52 16 23 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.03 0.85 8.09 -51.93 -0.42 0.43 16 25 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 26 H 0.13 2.21 8.06 -52.48 -0.42 1.79 16 27 H 0.12 1.71 7.84 -52.49 -0.41 1.30 16 28 H 0.08 0.98 7.06 -51.93 -0.37 0.62 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.10 7.29 -51.93 -0.38 0.72 16 34 H 0.13 2.46 8.06 -52.49 -0.42 2.04 16 LS Contribution 299.71 15.07 4.52 4.52 Total: -1.00 -28.53 299.71 -8.77 -37.30 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -4.40 Total: -1.21 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: -2.80 Total: -23.79 kcal Atomic # 7 Polarization: -25.81 SS G_CDS: 0.74 Total: -25.07 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.41 Total: -5.20 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -1.40 Total: -2.69 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.53 -8.77 -37.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436238.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.509 kcal (2) G-P(sol) polarization free energy of solvation -28.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds