Wall clock time and date at job start Mon Mar 30 2020 06:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99918 * 2 1 4 4 H 1.48508 * 109.47160 * 240.00558 * 3 2 1 5 5 H 1.48505 * 109.47127 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47362 * 120.00077 * 3 2 1 7 7 C 1.37867 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00235 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99983 * 359.97438 * 7 2 1 10 10 C 1.50707 * 109.47379 * 180.02562 * 9 7 2 11 11 C 1.38259 * 119.99279 * 270.27705 * 10 9 7 12 12 C 1.38222 * 120.02347 * 180.27367 * 11 10 9 13 13 C 1.38233 * 120.01513 * 359.70299 * 12 11 10 14 14 C 1.50703 * 120.00745 * 180.02562 * 13 12 11 15 15 H 1.08996 * 110.43663 * 180.67477 * 14 13 12 16 16 C 1.54812 * 110.48818 * 58.13143 * 14 13 12 17 17 C 1.55225 * 101.98879 * 220.51903 * 16 14 13 18 18 O 1.44378 * 103.56268 * 36.88174 * 17 16 14 19 19 C 1.43749 * 106.97889 * 320.01145 * 18 17 16 20 20 C 1.38326 * 119.98737 * 0.02562 * 13 12 11 21 21 Cl 1.73596 * 120.01848 * 180.02562 * 20 13 12 22 22 C 1.38190 * 119.99076 * 89.99529 * 10 9 7 23 23 H 0.97007 * 120.00055 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47105 * 59.99920 * 9 7 2 25 25 H 1.08999 * 109.47290 * 300.00166 * 9 7 2 26 26 H 1.08003 * 119.98870 * 0.02562 * 11 10 9 27 27 H 1.08002 * 119.99233 * 179.72532 * 12 11 10 28 28 H 1.09005 * 110.91044 * 338.64270 * 16 14 13 29 29 H 1.09002 * 110.90586 * 102.24261 * 16 14 13 30 30 H 1.08993 * 110.51538 * 278.38649 * 17 16 14 31 31 H 1.08993 * 110.77795 * 155.49780 * 17 16 14 32 32 H 1.08994 * 109.87611 * 267.09352 * 19 18 17 33 33 H 1.08995 * 109.88063 * 145.93808 * 19 18 17 34 34 H 1.08002 * 120.01169 * 0.03206 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1939 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6838 -4.1662 -1.1980 12 6 3.5777 -5.2205 -1.1987 13 6 4.0234 -5.7500 -0.0022 14 6 4.9984 -6.8992 -0.0032 15 1 5.2341 -7.1992 1.0178 16 6 6.2890 -6.5141 -0.7665 17 6 6.5994 -7.8160 -1.5526 18 8 5.2933 -8.3068 -1.9240 19 6 4.4275 -8.0901 -0.7972 20 6 3.5743 -5.2250 1.1962 21 17 4.1341 -5.8889 2.6993 22 6 2.6793 -4.1696 1.1963 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6247 -2.5570 0.8896 26 1 2.3365 -3.7523 -2.1331 27 1 3.9282 -5.6304 -2.1344 28 1 6.1049 -5.6832 -1.4477 29 1 7.0947 -6.2749 -0.0723 30 1 7.1122 -8.5350 -0.9138 31 1 7.1945 -7.5995 -2.4397 32 1 4.4083 -8.9799 -0.1681 33 1 3.4206 -7.8564 -1.1430 34 1 2.3280 -3.7594 2.1317 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260436238.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:54 Heat of formation + Delta-G solvation = -62.502225 kcal Electronic energy + Delta-G solvation = -17499.011285 eV Core-core repulsion = 14614.066192 eV Total energy + Delta-G solvation = -2884.945093 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.14488 -39.56482 -37.49731 -35.70890 -34.31475 -31.97690 -31.64710 -30.26638 -28.26200 -25.41455 -23.81881 -23.57117 -22.57301 -21.08075 -18.54359 -17.89030 -17.42410 -16.87687 -16.34257 -16.28947 -16.10049 -15.55153 -14.78826 -14.68333 -14.29285 -14.23466 -13.82079 -13.53596 -13.24129 -12.81618 -12.68606 -12.56929 -12.43025 -12.29910 -12.21609 -12.17173 -12.03952 -11.58098 -11.49690 -11.23295 -10.65585 -10.61559 -9.72066 -9.34138 -8.21899 -6.35229 0.26449 0.38111 1.13843 1.40030 1.42021 1.50333 2.37887 2.71860 3.04279 3.09709 3.50332 3.73326 3.86431 4.06311 4.18799 4.26696 4.27881 4.34968 4.46805 4.56556 4.75001 4.81801 4.84026 4.89024 5.03226 5.06956 5.16147 5.22229 5.31884 5.36713 5.47938 5.71657 5.89692 5.93078 5.95102 6.15080 6.76716 7.33630 8.87374 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.025215 B = 0.004808 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.162228 B = 5821.672085 C = 6223.986112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.531 4.531 8 H 0.055 0.945 9 C 0.057 3.943 10 C -0.050 4.050 11 C -0.122 4.122 12 C -0.092 4.092 13 C -0.086 4.086 14 C -0.083 4.083 15 H 0.103 0.897 16 C -0.145 4.145 17 C 0.046 3.954 18 O -0.397 6.397 19 C 0.057 3.943 20 C -0.031 4.031 21 Cl -0.066 7.066 22 C -0.123 4.123 23 H 0.266 0.734 24 H 0.010 0.990 25 H 0.005 0.995 26 H 0.125 0.875 27 H 0.148 0.852 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.646 -15.243 -0.269 19.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.787 3.213 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.568 4.568 8 H 0.073 0.927 9 C 0.020 3.980 10 C -0.050 4.050 11 C -0.140 4.140 12 C -0.110 4.110 13 C -0.087 4.087 14 C -0.101 4.101 15 H 0.121 0.879 16 C -0.183 4.183 17 C -0.030 4.030 18 O -0.317 6.317 19 C -0.020 4.020 20 C -0.057 4.057 21 Cl -0.037 7.037 22 C -0.142 4.142 23 H 0.075 0.925 24 H 0.029 0.971 25 H 0.023 0.977 26 H 0.143 0.857 27 H 0.166 0.834 28 H 0.093 0.907 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.125 0.875 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.483 -15.295 -0.328 19.745 hybrid contribution -0.186 1.319 0.544 1.438 sum 12.297 -13.977 0.216 18.617 Atomic orbital electron populations 1.70065 1.07633 1.28077 1.51039 1.25879 0.95721 1.02993 0.94485 0.85530 0.78345 0.78231 0.79159 1.19159 1.20570 1.19417 1.21313 0.93076 0.91117 1.51337 0.92691 1.18114 0.92791 0.90810 0.96301 1.20339 0.96687 0.94994 0.92977 1.21239 0.98202 0.96806 0.97771 1.21040 0.96549 0.95529 0.97890 1.19552 0.99562 0.98706 0.90859 1.21609 0.93860 0.92430 1.02221 0.87907 1.23325 0.96387 0.99098 0.99483 1.23770 0.85279 0.93623 1.00341 1.88849 1.21399 1.83688 1.37756 1.23282 0.94661 0.96371 0.87679 1.20779 1.00110 0.97774 0.87037 1.98310 1.88458 1.84865 1.32045 1.20897 0.98443 0.96292 0.98589 0.92506 0.97144 0.97680 0.85673 0.83413 0.90681 0.88589 0.90593 0.87480 0.90701 0.90127 0.86241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.25 13.29 21.44 0.28 -54.97 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.53 -29.78 9.09 25.60 0.23 -29.55 16 8 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 9 C 0.06 2.98 5.10 29.10 0.15 3.12 16 10 C -0.05 -2.13 5.07 -19.87 -0.10 -2.23 16 11 C -0.12 -4.49 9.70 22.27 0.22 -4.27 16 12 C -0.09 -2.74 8.10 22.26 0.18 -2.56 16 13 C -0.09 -2.43 4.75 -19.84 -0.09 -2.53 16 14 C -0.08 -1.79 3.14 -10.55 -0.03 -1.82 16 15 H 0.10 2.11 6.25 -2.39 -0.01 2.09 16 16 C -0.15 -2.66 6.62 31.98 0.21 -2.45 16 17 C 0.05 0.74 7.72 72.75 0.56 1.30 16 18 O -0.40 -8.81 11.52 -148.98 -1.72 -10.52 16 19 C 0.06 1.18 7.09 72.35 0.51 1.69 16 20 C -0.03 -0.98 6.31 22.33 0.14 -0.84 16 21 Cl -0.07 -1.78 27.04 -2.72 -0.07 -1.85 16 22 C -0.12 -4.79 9.49 22.29 0.21 -4.58 16 23 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 24 H 0.01 0.57 8.09 -2.39 -0.02 0.55 16 25 H 0.00 0.27 8.08 -2.39 -0.02 0.26 16 26 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 27 H 0.15 3.71 7.84 -2.91 -0.02 3.68 16 28 H 0.07 1.53 7.06 -2.38 -0.02 1.51 16 29 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.81 7.29 -2.39 -0.02 1.79 16 34 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -62.11 299.71 4.26 -57.84 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 1.09 Total: 7.58 kcal Atomic # 6 Polarization: -46.46 SS G_CDS: 2.65 Total: -43.81 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.28 Total: -54.97 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -1.72 Total: -10.52 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -0.07 Total: -1.85 kcal Total: -62.11 4.26 -57.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436238.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.658 kcal (2) G-P(sol) polarization free energy of solvation -62.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds