Wall clock time and date at job start Mon Mar 30 2020 06:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00393 * 2 1 4 4 H 1.48500 * 109.46802 * 240.00127 * 3 2 1 5 5 H 1.48497 * 109.46876 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47484 * 119.99727 * 3 2 1 7 7 C 1.37879 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00201 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.38264 * 119.99683 * 89.99694 * 10 9 7 12 12 C 1.38220 * 120.02583 * 179.97438 * 11 10 9 13 13 C 1.38232 * 120.01498 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00794 * 179.97438 * 13 12 11 15 15 H 1.09005 * 110.75520 * 182.03637 * 14 13 12 16 16 C 1.55305 * 110.85077 * 305.73436 * 14 13 12 17 17 C 1.54944 * 100.94092 * 152.32185 * 16 14 13 18 18 O 1.43646 * 105.14198 * 323.55551 * 17 16 14 19 19 C 1.43237 * 109.96554 * 24.42861 * 18 17 16 20 20 C 1.38335 * 119.98779 * 359.97438 * 13 12 11 21 21 Cl 1.73595 * 120.01468 * 179.72696 * 20 13 12 22 22 C 1.38189 * 119.99118 * 269.99284 * 10 9 7 23 23 H 0.97000 * 119.99485 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47633 * 59.99764 * 9 7 2 25 25 H 1.09003 * 109.47060 * 299.99673 * 9 7 2 26 26 H 1.08000 * 119.98449 * 0.02562 * 11 10 9 27 27 H 1.08002 * 119.99090 * 180.02562 * 12 11 10 28 28 H 1.08995 * 111.12655 * 270.24663 * 16 14 13 29 29 H 1.08999 * 111.11840 * 34.40446 * 16 14 13 30 30 H 1.09007 * 110.30458 * 204.64137 * 17 16 14 31 31 H 1.08997 * 110.39435 * 82.51941 * 17 16 14 32 32 H 1.08999 * 109.83317 * 238.77234 * 19 18 17 33 33 H 1.09000 * 109.90364 * 117.84728 * 19 18 17 34 34 H 1.08001 * 120.00973 * 0.03081 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0018 11 6 2.6785 -4.1695 1.1998 12 6 3.5763 -5.2204 1.2017 13 6 4.0269 -5.7470 0.0057 14 6 5.0062 -6.8925 0.0079 15 1 5.2859 -7.1635 -1.0102 16 6 6.2599 -6.5463 0.8566 17 6 6.7055 -7.9585 1.3125 18 8 5.4855 -8.6828 1.5366 19 6 4.4267 -8.1093 0.7608 20 6 3.5788 -5.2224 -1.1933 21 17 4.1496 -5.8785 -2.6957 22 6 2.6799 -4.1703 -1.1945 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5572 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 2.3264 -3.7586 2.1345 27 1 3.9258 -5.6302 2.1378 28 1 7.0276 -6.0697 0.2471 29 1 5.9959 -5.9227 1.7108 30 1 7.2819 -7.8936 2.2355 31 1 7.2943 -8.4412 0.5326 32 1 3.6192 -7.7871 1.4182 33 1 4.0515 -8.8419 0.0462 34 1 2.3300 -3.7600 -2.1302 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260436244.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:57 Heat of formation + Delta-G solvation = -48.223819 kcal Electronic energy + Delta-G solvation = -17456.758882 eV Core-core repulsion = 14572.432947 eV Total energy + Delta-G solvation = -2884.325935 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.02691 -38.43965 -36.23057 -34.15189 -32.71101 -30.65659 -30.29367 -29.21409 -26.68645 -23.74044 -22.57860 -22.36223 -21.35780 -19.88898 -16.98868 -16.50622 -16.35654 -15.42260 -15.14181 -14.97773 -14.48543 -14.27240 -13.41257 -13.35140 -13.30506 -12.91737 -12.39835 -12.03333 -11.66489 -11.62004 -11.50131 -11.27233 -11.18029 -10.94719 -10.78198 -10.69524 -10.48671 -10.35840 -9.65841 -9.63106 -9.50720 -8.50051 -8.36996 -7.91931 -6.12178 -4.16911 1.62784 1.74387 2.42368 3.27486 3.32050 3.34826 3.78221 4.05432 4.39077 4.53929 4.62821 4.88893 5.08138 5.08992 5.19463 5.23298 5.34253 5.57924 5.60150 5.69913 5.75997 5.81851 5.84967 5.93268 6.12961 6.16111 6.42382 6.70090 6.84495 6.88036 6.95865 7.30712 7.45840 7.66210 7.82752 8.20179 8.87633 9.47602 10.97664 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026332 B = 0.004695 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.097639 B = 5962.144684 C = 6317.408913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.047 3.953 10 C -0.019 4.019 11 C -0.116 4.116 12 C -0.105 4.105 13 C -0.101 4.101 14 C -0.082 4.082 15 H 0.097 0.903 16 C -0.148 4.148 17 C 0.051 3.949 18 O -0.387 6.387 19 C 0.059 3.941 20 C -0.026 4.026 21 Cl -0.088 7.088 22 C -0.112 4.112 23 H 0.264 0.736 24 H 0.032 0.968 25 H 0.033 0.967 26 H 0.126 0.874 27 H 0.122 0.878 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.883 -13.516 0.360 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.020 4.020 11 C -0.134 4.134 12 C -0.123 4.123 13 C -0.102 4.102 14 C -0.100 4.100 15 H 0.115 0.885 16 C -0.186 4.186 17 C -0.025 4.025 18 O -0.306 6.306 19 C -0.018 4.018 20 C -0.053 4.053 21 Cl -0.059 7.059 22 C -0.131 4.131 23 H 0.073 0.927 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.144 0.856 27 H 0.140 0.860 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.748 -13.633 0.356 16.764 hybrid contribution 0.513 1.188 -0.381 1.349 sum 10.262 -12.445 -0.025 16.130 Atomic orbital electron populations 1.69940 1.06048 1.27104 1.49999 1.24996 0.94887 0.99284 0.94965 0.86582 0.79552 0.82703 0.78789 1.20109 1.21150 1.20115 1.20977 0.93003 0.89715 1.51728 0.92463 1.18396 0.92433 0.89317 0.98778 1.20717 0.95526 0.94633 0.91091 1.21205 0.97494 0.95898 0.98771 1.20832 0.98011 0.97076 0.96401 1.19080 1.00403 0.98839 0.91833 1.21686 0.93977 0.93204 1.01154 0.88473 1.23386 0.97265 0.97519 1.00381 1.23374 0.87545 0.90759 1.00871 1.88380 1.18501 1.55981 1.67755 1.23265 0.90424 0.93877 0.94187 1.20765 1.00554 0.98484 0.85447 1.98309 1.88473 1.85719 1.33421 1.21006 0.97324 0.95083 0.99665 0.92654 0.95016 0.94898 0.85582 0.85987 0.89743 0.89767 0.89794 0.92286 0.90671 0.91355 0.85189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.29 55.43 0.74 -24.94 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -13.95 9.09 -34.44 -0.31 -14.26 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.05 1.17 5.10 -29.03 -0.15 1.02 16 10 C -0.02 -0.40 5.07 -104.63 -0.53 -0.93 16 11 C -0.12 -2.07 9.70 -39.58 -0.38 -2.45 16 12 C -0.11 -1.60 8.12 -39.59 -0.32 -1.92 16 13 C -0.10 -1.50 4.94 -104.59 -0.52 -2.02 16 14 C -0.08 -1.01 3.09 -89.82 -0.28 -1.29 16 15 H 0.10 1.19 6.29 -51.93 -0.33 0.86 16 16 C -0.15 -1.59 6.54 -24.48 -0.16 -1.75 16 17 C 0.05 0.51 7.78 38.18 0.30 0.81 16 18 O -0.39 -4.91 11.36 -35.23 -0.40 -5.31 16 19 C 0.06 0.71 7.31 37.88 0.28 0.99 16 20 C -0.03 -0.43 6.31 -39.49 -0.25 -0.68 16 21 Cl -0.09 -1.27 27.05 -51.86 -1.40 -2.67 16 22 C -0.11 -2.11 9.49 -39.55 -0.38 -2.49 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.03 0.82 8.09 -51.93 -0.42 0.40 16 25 H 0.03 0.84 8.08 -51.93 -0.42 0.42 16 26 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 27 H 0.12 1.57 7.30 -52.49 -0.38 1.19 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.93 6.82 -51.93 -0.35 0.57 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.92 7.03 -51.93 -0.37 0.55 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.13 2.45 8.06 -52.49 -0.42 2.02 16 LS Contribution 298.91 15.07 4.50 4.50 Total: -1.00 -28.35 298.91 -8.73 -37.08 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -4.35 Total: -1.30 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: -2.80 Total: -23.40 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: 0.74 Total: -24.94 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.40 Total: -5.31 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -1.40 Total: -2.67 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.35 -8.73 -37.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436244.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.141 kcal (2) G-P(sol) polarization free energy of solvation -28.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds