Wall clock time and date at job start Mon Mar 30 2020 06:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00393 * 2 1 4 4 H 1.48500 * 109.46802 * 240.00127 * 3 2 1 5 5 H 1.48497 * 109.46876 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47484 * 119.99727 * 3 2 1 7 7 C 1.37879 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00201 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.38264 * 119.99683 * 89.99694 * 10 9 7 12 12 C 1.38220 * 120.02583 * 179.97438 * 11 10 9 13 13 C 1.38232 * 120.01498 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00794 * 179.97438 * 13 12 11 15 15 H 1.09005 * 110.75520 * 182.03637 * 14 13 12 16 16 C 1.55305 * 110.85077 * 305.73436 * 14 13 12 17 17 C 1.54944 * 100.94092 * 152.32185 * 16 14 13 18 18 O 1.43646 * 105.14198 * 323.55551 * 17 16 14 19 19 C 1.43237 * 109.96554 * 24.42861 * 18 17 16 20 20 C 1.38335 * 119.98779 * 359.97438 * 13 12 11 21 21 Cl 1.73595 * 120.01468 * 179.72696 * 20 13 12 22 22 C 1.38189 * 119.99118 * 269.99284 * 10 9 7 23 23 H 0.97000 * 119.99485 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47633 * 59.99764 * 9 7 2 25 25 H 1.09003 * 109.47060 * 299.99673 * 9 7 2 26 26 H 1.08000 * 119.98449 * 0.02562 * 11 10 9 27 27 H 1.08002 * 119.99090 * 180.02562 * 12 11 10 28 28 H 1.08995 * 111.12655 * 270.24663 * 16 14 13 29 29 H 1.08999 * 111.11840 * 34.40446 * 16 14 13 30 30 H 1.09007 * 110.30458 * 204.64137 * 17 16 14 31 31 H 1.08997 * 110.39435 * 82.51941 * 17 16 14 32 32 H 1.08999 * 109.83317 * 238.77234 * 19 18 17 33 33 H 1.09000 * 109.90364 * 117.84728 * 19 18 17 34 34 H 1.08001 * 120.00973 * 0.03081 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0018 11 6 2.6785 -4.1695 1.1998 12 6 3.5763 -5.2204 1.2017 13 6 4.0269 -5.7470 0.0057 14 6 5.0062 -6.8925 0.0079 15 1 5.2859 -7.1635 -1.0102 16 6 6.2599 -6.5463 0.8566 17 6 6.7055 -7.9585 1.3125 18 8 5.4855 -8.6828 1.5366 19 6 4.4267 -8.1093 0.7608 20 6 3.5788 -5.2224 -1.1933 21 17 4.1496 -5.8785 -2.6957 22 6 2.6799 -4.1703 -1.1945 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5572 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 2.3264 -3.7586 2.1345 27 1 3.9258 -5.6302 2.1378 28 1 7.0276 -6.0697 0.2471 29 1 5.9959 -5.9227 1.7108 30 1 7.2819 -7.8936 2.2355 31 1 7.2943 -8.4412 0.5326 32 1 3.6192 -7.7871 1.4182 33 1 4.0515 -8.8419 0.0462 34 1 2.3300 -3.7600 -2.1302 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260436244.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:56 Heat of formation + Delta-G solvation = -62.722947 kcal Electronic energy + Delta-G solvation = -17457.387611 eV Core-core repulsion = 14572.432947 eV Total energy + Delta-G solvation = -2884.954664 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.13739 -39.61243 -37.50280 -35.73670 -34.34944 -31.99380 -31.65302 -30.33575 -28.27934 -25.42893 -23.86557 -23.35987 -22.68082 -21.14798 -18.54404 -18.01010 -17.49861 -16.85053 -16.39634 -16.19548 -16.04809 -15.38462 -14.77442 -14.69600 -14.29910 -14.22599 -14.10690 -13.60102 -13.23382 -12.80766 -12.69464 -12.60441 -12.47208 -12.35806 -12.24780 -12.18667 -12.03972 -11.54770 -11.47030 -11.28656 -10.61348 -10.48380 -9.72672 -9.35967 -8.21805 -6.34982 0.25556 0.37074 1.13450 1.40362 1.42219 1.50523 2.37935 2.70402 2.94548 3.09965 3.51542 3.66077 3.86598 4.05822 4.16577 4.22765 4.26692 4.32162 4.46237 4.53806 4.72511 4.79967 4.86304 4.91760 5.00394 5.04320 5.17326 5.22063 5.32204 5.36806 5.47699 5.71877 5.89256 5.93561 6.03343 6.15176 6.77062 7.33879 8.87496 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.026332 B = 0.004695 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.097639 B = 5962.144684 C = 6317.408913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.530 4.530 8 H 0.055 0.945 9 C 0.056 3.944 10 C -0.049 4.049 11 C -0.121 4.121 12 C -0.092 4.092 13 C -0.085 4.085 14 C -0.081 4.081 15 H 0.101 0.899 16 C -0.146 4.146 17 C 0.049 3.951 18 O -0.403 6.403 19 C 0.061 3.939 20 C -0.030 4.030 21 Cl -0.067 7.067 22 C -0.123 4.123 23 H 0.266 0.734 24 H 0.005 0.995 25 H 0.011 0.989 26 H 0.127 0.873 27 H 0.153 0.847 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.324 -14.501 0.768 19.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.787 3.213 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.568 4.568 8 H 0.073 0.927 9 C 0.019 3.981 10 C -0.049 4.049 11 C -0.139 4.139 12 C -0.110 4.110 13 C -0.086 4.086 14 C -0.100 4.100 15 H 0.119 0.881 16 C -0.183 4.183 17 C -0.026 4.026 18 O -0.323 6.323 19 C -0.016 4.016 20 C -0.056 4.056 21 Cl -0.038 7.038 22 C -0.142 4.142 23 H 0.075 0.925 24 H 0.023 0.977 25 H 0.029 0.971 26 H 0.145 0.855 27 H 0.170 0.830 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.202 -14.632 0.762 19.067 hybrid contribution -0.202 1.373 -0.538 1.489 sum 12.000 -13.259 0.223 17.884 Atomic orbital electron populations 1.70062 1.07634 1.28069 1.51042 1.25878 0.95711 1.02981 0.94500 0.85533 0.78345 0.78256 0.79161 1.19454 1.20624 1.19119 1.21317 0.93088 0.91098 1.51321 0.92651 1.18118 0.92800 0.90808 0.96334 1.20347 0.96651 0.94912 0.93003 1.21250 0.98131 0.96745 0.97777 1.21063 0.96489 0.95615 0.97865 1.19413 0.99518 0.98629 0.91015 1.21729 0.94051 0.92243 1.01973 0.88070 1.23407 0.96576 0.98184 1.00139 1.23542 0.86864 0.89948 1.02272 1.88370 1.19371 1.56594 1.67969 1.23236 0.90386 0.93761 0.94199 1.20781 0.99974 0.97866 0.87027 1.98314 1.88057 1.85218 1.32217 1.20896 0.98404 0.96249 0.98653 0.92516 0.97708 0.97073 0.85474 0.82962 0.88616 0.89831 0.88105 0.90968 0.90928 0.90677 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.95 13.29 21.45 0.28 -54.67 16 2 C 0.01 0.44 5.46 84.66 0.46 0.90 16 3 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.53 -29.51 9.09 25.60 0.23 -29.27 16 8 H 0.06 3.03 7.74 -2.91 -0.02 3.00 16 9 C 0.06 2.92 5.10 29.10 0.15 3.07 16 10 C -0.05 -2.06 5.07 -19.87 -0.10 -2.16 16 11 C -0.12 -4.31 9.70 22.27 0.22 -4.09 16 12 C -0.09 -2.62 8.12 22.26 0.18 -2.44 16 13 C -0.08 -2.35 4.94 -19.84 -0.10 -2.45 16 14 C -0.08 -1.76 3.09 -10.28 -0.03 -1.80 16 15 H 0.10 2.15 6.29 -2.38 -0.01 2.14 16 16 C -0.15 -2.61 6.54 32.05 0.21 -2.40 16 17 C 0.05 0.81 7.78 72.65 0.56 1.38 16 18 O -0.40 -8.97 11.36 -148.98 -1.69 -10.66 16 19 C 0.06 1.29 7.31 72.45 0.53 1.82 16 20 C -0.03 -0.95 6.31 22.33 0.14 -0.81 16 21 Cl -0.07 -1.82 27.05 -2.72 -0.07 -1.89 16 22 C -0.12 -4.72 9.49 22.29 0.21 -4.51 16 23 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 24 H 0.00 0.26 8.09 -2.39 -0.02 0.24 16 25 H 0.01 0.60 8.08 -2.39 -0.02 0.58 16 26 H 0.13 4.41 8.06 -2.91 -0.02 4.38 16 27 H 0.15 3.41 7.30 -2.91 -0.02 3.39 16 28 H 0.10 1.52 8.14 -2.39 -0.02 1.51 16 29 H 0.08 1.53 6.82 -2.39 -0.02 1.51 16 30 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.58 7.03 -2.39 -0.02 1.56 16 33 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -61.61 298.91 4.31 -57.30 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: 1.10 Total: 7.23 kcal Atomic # 6 Polarization: -45.43 SS G_CDS: 2.67 Total: -42.76 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.28 Total: -54.67 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -1.69 Total: -10.66 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.07 Total: -1.89 kcal Total: -61.61 4.31 -57.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436244.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.421 kcal (2) G-P(sol) polarization free energy of solvation -61.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds