Wall clock time and date at job start Mon Mar 30 2020 07:18:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.50706 * 109.46885 * 2 1
4 4 C 1.38285 * 119.94085 * 89.99812 * 3 2 1
5 5 C 1.38210 * 120.04247 * 179.97438 * 4 3 2
6 6 Cl 1.73608 * 120.04108 * 180.02562 * 5 4 3
7 7 C 1.38855 * 119.92247 * 0.30475 * 5 4 3
8 8 O 1.35926 * 120.05784 * 179.70138 * 7 5 4
9 9 C 1.38666 * 119.88208 * 359.43844 * 7 5 4
10 10 C 1.50695 * 120.02136 * 180.28026 * 9 7 5
11 11 C 1.50702 * 115.54924 * 280.11283 * 10 9 7
12 12 H 1.08001 * 119.99888 * 145.58493 * 11 10 9
13 13 C 1.37874 * 120.00398 * 325.58812 * 11 10 9
14 14 N 1.31521 * 119.99463 * 359.97438 * 13 11 10
15 15 Si 1.86791 * 120.00415 * 179.97438 * 13 11 10
16 16 H 1.48495 * 109.47224 * 89.99907 * 15 13 11
17 17 H 1.48500 * 109.47358 * 209.99908 * 15 13 11
18 18 H 1.48502 * 109.47036 * 330.00150 * 15 13 11
19 19 C 1.53006 * 117.49855 * 134.41054 * 10 9 7
20 20 C 1.52998 * 117.50210 * 65.78936 * 10 9 7
21 21 C 1.38193 * 119.95463 * 0.51246 * 9 7 5
22 22 H 1.08994 * 109.47027 * 60.00482 * 1 2 3
23 23 H 1.09004 * 109.46697 * 180.02562 * 1 2 3
24 24 H 1.08998 * 109.47595 * 300.00015 * 1 2 3
25 25 H 1.08998 * 109.47595 * 239.99984 * 2 1 3
26 26 H 1.08999 * 109.47410 * 119.99726 * 2 1 3
27 27 H 1.08002 * 119.97768 * 0.02562 * 4 3 2
28 28 H 0.96699 * 114.00958 * 84.96125 * 8 7 5
29 29 H 0.97003 * 119.99429 * 179.97438 * 14 13 11
30 30 H 1.09000 * 117.49663 * 359.97438 * 19 10 9
31 31 H 1.08998 * 117.49770 * 145.01302 * 19 10 9
32 32 H 1.09003 * 117.50174 * 214.97747 * 20 10 9
33 33 H 1.09000 * 117.49682 * 359.97438 * 20 10 9
34 34 H 1.07994 * 119.96428 * 179.76312 * 21 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0322 1.4209 0.0000
4 6 2.2622 2.0716 1.1983
5 6 2.7234 3.3745 1.2008
6 17 3.0128 4.1912 2.7052
7 6 2.9495 4.0315 -0.0015
8 8 3.3972 5.3149 -0.0022
9 6 2.7229 3.3742 -1.2012
10 6 2.9732 4.0821 -2.5078
11 6 1.8855 5.0242 -2.9554
12 1 2.1398 5.9286 -3.4882
13 6 0.5656 4.7317 -2.6847
14 7 0.2558 3.6302 -2.0363
15 14 -0.7826 5.8998 -3.2389
16 1 -1.2366 5.5210 -4.6011
17 1 -1.9266 5.8186 -2.2956
18 1 -0.2565 7.2883 -3.2607
19 6 3.7355 3.3166 -3.5913
20 6 4.4176 4.4618 -2.8402
21 6 2.2628 2.0711 -1.1979
22 1 -0.3633 0.5137 -0.8900
23 1 -0.3633 -1.0277 0.0005
24 1 -0.3634 0.5138 0.8899
25 1 1.8934 -0.5138 -0.8899
26 1 1.8933 -0.5138 0.8900
27 1 2.0822 1.5611 2.1329
28 1 4.3578 5.3966 0.0730
29 1 -0.6728 3.4246 -1.8455
30 1 4.0562 2.3012 -3.3589
31 1 3.4501 3.4942 -4.6282
32 1 4.5811 5.3928 -3.3829
33 1 5.1867 4.1999 -2.1136
34 1 2.0826 1.5604 -2.1322
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260439402.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:18:18
Heat of formation + Delta-G solvation = -10.588398 kcal
Electronic energy + Delta-G solvation = -18526.919661 eV
Core-core repulsion = 15644.225720 eV
Total energy + Delta-G solvation = -2882.693940 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 266.081 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-39.30944 -36.37407 -36.24613 -35.57547 -32.55915 -32.13873 -29.54036 -27.81686
-25.64978 -23.19046 -22.52154 -21.33899 -20.51154 -19.03467 -17.48978 -16.49132
-15.35421 -15.02569 -14.70341 -14.42503 -13.87447 -13.63827 -13.19226 -13.02596
-12.52585 -12.35670 -11.86361 -11.61342 -11.35322 -11.08209 -10.98203 -10.87750
-10.65157 -10.47044 -10.43488 -10.29856 -10.18290 -10.03370 -9.33140 -9.19157
-8.86870 -8.28409 -7.74762 -7.48078 -5.94229 -4.09789 2.06079 2.22431
2.82046 3.28008 3.36014 3.39539 4.37828 4.49836 4.92044 5.02603
5.34304 5.44254 5.52499 5.69631 5.84149 5.98157 6.01659 6.16382
6.19309 6.26429 6.31821 6.41331 6.57667 6.63683 6.70506 6.74137
6.81370 6.93012 7.14442 7.20405 7.41364 7.61171 7.70098 7.83958
8.29868 8.52654 8.85273 9.49361 10.96577
Molecular weight = 266.08amu
Principal moments of inertia in cm(-1)
A = 0.014421 B = 0.009192 C = 0.008051
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1941.173039 B = 3045.405916 C = 3476.853930
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.072 4.072
3 C -0.099 4.099
4 C -0.122 4.122
5 C -0.071 4.071
6 Cl -0.094 7.094
7 C 0.108 3.892
8 O -0.472 6.472
9 C 0.029 3.971
10 C 0.090 3.910
11 C -0.479 4.479
12 H 0.063 0.937
13 C 0.073 3.927
14 N -0.870 5.870
15 Si 0.895 3.105
16 H -0.281 1.281
17 H -0.286 1.286
18 H -0.273 1.273
19 C -0.207 4.207
20 C -0.201 4.201
21 C -0.027 4.027
22 H 0.065 0.935
23 H 0.046 0.954
24 H 0.051 0.949
25 H 0.065 0.935
26 H 0.060 0.940
27 H 0.116 0.884
28 H 0.369 0.631
29 H 0.261 0.739
30 H 0.066 0.934
31 H 0.081 0.919
32 H 0.079 0.921
33 H 0.065 0.935
34 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.441 -5.455 4.683 8.451
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.109 4.109
3 C -0.100 4.100
4 C -0.141 4.141
5 C -0.098 4.098
6 Cl -0.066 7.066
7 C 0.062 3.938
8 O -0.279 6.279
9 C 0.028 3.972
10 C 0.090 3.910
11 C -0.517 4.517
12 H 0.081 0.919
13 C -0.131 4.131
14 N -0.505 5.505
15 Si 0.723 3.277
16 H -0.207 1.207
17 H -0.212 1.212
18 H -0.198 1.198
19 C -0.245 4.245
20 C -0.238 4.238
21 C -0.046 4.046
22 H 0.084 0.916
23 H 0.065 0.935
24 H 0.070 0.930
25 H 0.084 0.916
26 H 0.078 0.922
27 H 0.134 0.866
28 H 0.222 0.778
29 H 0.071 0.929
30 H 0.085 0.915
31 H 0.099 0.901
32 H 0.098 0.902
33 H 0.084 0.916
34 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges 3.671 -5.338 4.840 8.087
hybrid contribution -0.422 0.661 -0.032 0.785
sum 3.249 -4.677 4.809 7.454
Atomic orbital electron populations
1.21722 0.95058 1.00411 1.02923 1.20369 0.96097 0.92876 1.01555
1.19566 1.01664 0.96160 0.92623 1.20376 1.03219 0.92727 0.97802
1.21182 1.09230 0.94044 0.85340 1.98287 1.95080 1.80005 1.33212
1.17914 1.01693 0.84333 0.89862 1.84962 1.25348 1.21828 1.95764
1.19328 0.93326 0.91699 0.92849 1.17594 0.89432 0.95703 0.88269
1.20392 0.89171 1.05727 1.36360 0.91911 1.24969 0.98677 0.95226
0.94254 1.69965 1.18117 1.23651 1.38816 0.86539 0.81467 0.81478
0.78252 1.20707 1.21176 1.19829 1.23118 1.08193 0.94281 0.98910
1.22856 0.97804 0.98967 1.04212 1.20507 0.93876 0.93750 0.96435
0.91595 0.93518 0.93012 0.91586 0.92155 0.86640 0.77818 0.92857
0.91499 0.90079 0.90212 0.91597 0.86408
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.15 9.89 37.16 0.37 -1.78 16
2 C -0.07 -1.08 6.06 -27.88 -0.17 -1.25 16
3 C -0.10 -1.86 5.13 -104.60 -0.54 -2.39 16
4 C -0.12 -2.28 9.48 -39.57 -0.38 -2.65 16
5 C -0.07 -1.42 6.33 -39.36 -0.25 -1.67 16
6 Cl -0.09 -1.67 28.51 -51.86 -1.48 -3.14 16
7 C 0.11 2.36 6.65 -39.19 -0.26 2.10 16
8 O -0.47 -9.95 12.18 -19.51 -0.24 -10.19 16
9 C 0.03 0.66 3.51 -104.48 -0.37 0.30 16
10 C 0.09 2.13 1.52 -156.81 -0.24 1.90 16
11 C -0.48 -12.76 9.06 -34.44 -0.31 -13.07 16
12 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16
13 C 0.07 1.94 5.37 -17.82 -0.10 1.84 16
14 N -0.87 -23.14 10.02 55.43 0.56 -22.58 16
15 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16
16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16
19 C -0.21 -4.38 9.55 -26.73 -0.26 -4.63 16
20 C -0.20 -4.11 9.68 -26.73 -0.26 -4.37 16
21 C -0.03 -0.58 7.10 -39.60 -0.28 -0.86 16
22 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16
23 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16
24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16
25 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16
26 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16
27 H 0.12 1.89 8.06 -52.49 -0.42 1.46 16
28 H 0.37 6.02 9.06 45.56 0.41 6.43 16
29 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16
30 H 0.07 1.31 8.00 -51.93 -0.42 0.89 16
31 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16
32 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16
33 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16
34 H 0.12 2.55 7.92 -52.49 -0.42 2.13 16
LS Contribution 305.08 15.07 4.60 4.60
Total: -1.00 -27.96 305.08 -8.38 -36.34
By element:
Atomic # 1 Polarization: 9.14 SS G_CDS: -3.76 Total: 5.37 kcal
Atomic # 6 Polarization: -23.51 SS G_CDS: -3.03 Total: -26.54 kcal
Atomic # 7 Polarization: -23.14 SS G_CDS: 0.56 Total: -22.58 kcal
Atomic # 8 Polarization: -9.95 SS G_CDS: -0.24 Total: -10.19 kcal
Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal
Atomic # 17 Polarization: -1.67 SS G_CDS: -1.48 Total: -3.14 kcal
Total LS contribution 4.60 Total: 4.60 kcal
Total: -27.96 -8.38 -36.34 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260439402.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.753 kcal
(2) G-P(sol) polarization free energy of solvation -27.964 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.211 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.341 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.588 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds