Wall clock time and date at job start Mon Mar 30 2020 07:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.46885 * 2 1 4 4 C 1.38285 * 119.94085 * 89.99812 * 3 2 1 5 5 C 1.38210 * 120.04247 * 179.97438 * 4 3 2 6 6 Cl 1.73608 * 120.04108 * 180.02562 * 5 4 3 7 7 C 1.38855 * 119.92247 * 0.30475 * 5 4 3 8 8 O 1.35926 * 120.05784 * 179.70138 * 7 5 4 9 9 C 1.38666 * 119.88208 * 359.43844 * 7 5 4 10 10 C 1.50695 * 120.02136 * 180.28026 * 9 7 5 11 11 C 1.50702 * 115.54924 * 280.11283 * 10 9 7 12 12 H 1.08001 * 119.99888 * 145.58493 * 11 10 9 13 13 C 1.37874 * 120.00398 * 325.58812 * 11 10 9 14 14 N 1.31521 * 119.99463 * 359.97438 * 13 11 10 15 15 Si 1.86791 * 120.00415 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47224 * 89.99907 * 15 13 11 17 17 H 1.48500 * 109.47358 * 209.99908 * 15 13 11 18 18 H 1.48502 * 109.47036 * 330.00150 * 15 13 11 19 19 C 1.53006 * 117.49855 * 134.41054 * 10 9 7 20 20 C 1.52998 * 117.50210 * 65.78936 * 10 9 7 21 21 C 1.38193 * 119.95463 * 0.51246 * 9 7 5 22 22 H 1.08994 * 109.47027 * 60.00482 * 1 2 3 23 23 H 1.09004 * 109.46697 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47595 * 300.00015 * 1 2 3 25 25 H 1.08998 * 109.47595 * 239.99984 * 2 1 3 26 26 H 1.08999 * 109.47410 * 119.99726 * 2 1 3 27 27 H 1.08002 * 119.97768 * 0.02562 * 4 3 2 28 28 H 0.96699 * 114.00958 * 84.96125 * 8 7 5 29 29 H 0.97003 * 119.99429 * 179.97438 * 14 13 11 30 30 H 1.09000 * 117.49663 * 359.97438 * 19 10 9 31 31 H 1.08998 * 117.49770 * 145.01302 * 19 10 9 32 32 H 1.09003 * 117.50174 * 214.97747 * 20 10 9 33 33 H 1.09000 * 117.49682 * 359.97438 * 20 10 9 34 34 H 1.07994 * 119.96428 * 179.76312 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2622 2.0716 1.1983 5 6 2.7234 3.3745 1.2008 6 17 3.0128 4.1912 2.7052 7 6 2.9495 4.0315 -0.0015 8 8 3.3972 5.3149 -0.0022 9 6 2.7229 3.3742 -1.2012 10 6 2.9732 4.0821 -2.5078 11 6 1.8855 5.0242 -2.9554 12 1 2.1398 5.9286 -3.4882 13 6 0.5656 4.7317 -2.6847 14 7 0.2558 3.6302 -2.0363 15 14 -0.7826 5.8998 -3.2389 16 1 -1.2366 5.5210 -4.6011 17 1 -1.9266 5.8186 -2.2956 18 1 -0.2565 7.2883 -3.2607 19 6 3.7355 3.3166 -3.5913 20 6 4.4176 4.4618 -2.8402 21 6 2.2628 2.0711 -1.1979 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.0822 1.5611 2.1329 28 1 4.3578 5.3966 0.0730 29 1 -0.6728 3.4246 -1.8455 30 1 4.0562 2.3012 -3.3589 31 1 3.4501 3.4942 -4.6282 32 1 4.5811 5.3928 -3.3829 33 1 5.1867 4.1999 -2.1136 34 1 2.0826 1.5604 -2.1322 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260439402.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:17 Heat of formation + Delta-G solvation = -25.063008 kcal Electronic energy + Delta-G solvation = -18527.547327 eV Core-core repulsion = 15644.225720 eV Total energy + Delta-G solvation = -2883.321607 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.86816 -37.97609 -37.77300 -37.09078 -34.10906 -33.89141 -31.09570 -29.25909 -27.60001 -24.54792 -24.13331 -22.94226 -22.04246 -20.74004 -19.11005 -18.25260 -16.85342 -16.63826 -16.53471 -16.00681 -15.55143 -15.08210 -14.75714 -14.44605 -13.89991 -13.82580 -13.56918 -13.03437 -12.93745 -12.87414 -12.86069 -12.40961 -12.23497 -12.08519 -11.90140 -11.77995 -11.66139 -11.59929 -11.05637 -10.98280 -10.61204 -10.12264 -9.36128 -9.00952 -7.88122 -6.11473 0.51828 0.68842 1.32849 1.38462 1.42060 1.49296 2.43274 2.94566 3.07106 3.51004 3.67495 4.00472 4.08576 4.35391 4.50349 4.56385 4.61329 4.65010 4.67663 4.86730 4.94245 4.95453 5.12183 5.14120 5.19724 5.24863 5.39543 5.50503 5.54890 5.57269 5.75712 5.85625 6.05315 6.18232 6.40051 6.83021 7.08498 7.47357 8.95502 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.014421 B = 0.009192 C = 0.008051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.173039 B = 3045.405916 C = 3476.853930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.070 4.070 3 C -0.095 4.095 4 C -0.121 4.121 5 C -0.079 4.079 6 Cl -0.076 7.076 7 C 0.089 3.911 8 O -0.488 6.488 9 C 0.009 3.991 10 C 0.060 3.940 11 C -0.499 4.499 12 H 0.047 0.953 13 C 0.033 3.967 14 N -0.878 5.878 15 Si 0.941 3.059 16 H -0.274 1.274 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.200 4.200 20 C -0.183 4.183 21 C -0.041 4.041 22 H 0.036 0.964 23 H 0.075 0.925 24 H 0.046 0.954 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.143 0.857 28 H 0.386 0.614 29 H 0.256 0.744 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.714 -6.598 5.800 9.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.107 4.107 3 C -0.095 4.095 4 C -0.140 4.140 5 C -0.106 4.106 6 Cl -0.047 7.047 7 C 0.044 3.956 8 O -0.298 6.298 9 C 0.008 3.992 10 C 0.059 3.941 11 C -0.537 4.537 12 H 0.065 0.935 13 C -0.169 4.169 14 N -0.514 5.514 15 Si 0.768 3.232 16 H -0.200 1.200 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.238 4.238 20 C -0.220 4.220 21 C -0.060 4.060 22 H 0.055 0.945 23 H 0.094 0.906 24 H 0.065 0.935 25 H 0.093 0.907 26 H 0.107 0.893 27 H 0.161 0.839 28 H 0.241 0.759 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.964 -6.480 5.952 9.650 hybrid contribution -0.459 1.032 -0.347 1.181 sum 3.505 -5.448 5.605 8.567 Atomic orbital electron populations 1.21670 0.94932 1.01822 1.01232 1.20460 0.96008 0.90812 1.03440 1.19937 1.00088 0.97775 0.91719 1.20722 1.02085 0.92313 0.98880 1.21320 1.08967 0.94637 0.85712 1.98287 1.94958 1.79799 1.31697 1.18070 1.02624 0.84537 0.90418 1.84899 1.27073 1.21940 1.95848 1.19343 0.94734 0.92433 0.92673 1.17638 0.90100 0.96712 0.89622 1.20605 0.90593 1.05939 1.36556 0.93468 1.25504 1.00113 0.96500 0.94781 1.70103 1.17795 1.24225 1.39269 0.85822 0.79470 0.79838 0.78060 1.20016 1.21391 1.20293 1.23067 1.07454 0.95285 0.97964 1.22860 0.96694 0.98585 1.03844 1.20493 0.94865 0.93648 0.96954 0.94473 0.90584 0.93460 0.90692 0.89284 0.83942 0.75882 0.93391 0.90015 0.90780 0.90327 0.89434 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.89 71.98 0.71 -3.14 16 2 C -0.07 -1.92 6.06 29.85 0.18 -1.74 16 3 C -0.09 -3.37 5.13 -19.85 -0.10 -3.47 16 4 C -0.12 -4.25 9.48 22.27 0.21 -4.04 16 5 C -0.08 -3.05 6.33 22.41 0.14 -2.91 16 6 Cl -0.08 -2.54 28.51 -2.72 -0.08 -2.62 16 7 C 0.09 3.85 6.65 22.52 0.15 4.00 16 8 O -0.49 -20.41 12.18 -92.72 -1.13 -21.54 16 9 C 0.01 0.42 3.51 -19.77 -0.07 0.35 16 10 C 0.06 2.83 1.52 -53.67 -0.08 2.74 16 11 C -0.50 -27.03 9.06 25.60 0.23 -26.80 16 12 H 0.05 2.60 7.81 -2.91 -0.02 2.58 16 13 C 0.03 1.78 5.37 84.65 0.45 2.24 16 14 N -0.88 -47.22 10.02 21.45 0.21 -47.01 16 15 Si 0.94 43.95 29.54 68.60 2.03 45.98 16 16 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 17 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 19 C -0.20 -8.39 9.55 30.60 0.29 -8.10 16 20 C -0.18 -7.34 9.68 30.59 0.30 -7.05 16 21 C -0.04 -1.72 7.10 22.26 0.16 -1.57 16 22 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.07 1.93 8.08 -2.39 -0.02 1.91 16 26 H 0.09 1.96 8.08 -2.39 -0.02 1.94 16 27 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 28 H 0.39 12.33 9.06 -74.06 -0.67 11.66 16 29 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 30 H 0.08 3.14 8.00 -2.39 -0.02 3.12 16 31 H 0.07 3.15 8.14 -2.39 -0.02 3.14 16 32 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 33 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 34 H 0.10 4.56 7.92 -2.91 -0.02 4.54 16 Total: -1.00 -59.33 305.08 4.04 -55.29 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.44 Total: 19.38 kcal Atomic # 6 Polarization: -52.05 SS G_CDS: 2.58 Total: -49.48 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.21 Total: -47.01 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -1.13 Total: -21.54 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 17 Polarization: -2.54 SS G_CDS: -0.08 Total: -2.62 kcal Total: -59.33 4.04 -55.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260439402.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.225 kcal (2) G-P(sol) polarization free energy of solvation -59.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds