Wall clock time and date at job start Mon Mar 30 2020 06:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35917 * 117.00073 * 2 1 4 4 C 1.38749 * 120.04518 * 359.97172 * 3 2 1 5 5 C 1.38116 * 119.95794 * 180.02562 * 4 3 2 6 6 C 1.38387 * 120.04393 * 359.97438 * 5 4 3 7 7 Cl 1.73606 * 119.95765 * 180.02562 * 6 5 4 8 8 C 1.38353 * 120.08606 * 359.77170 * 6 5 4 9 9 C 1.50700 * 119.97728 * 180.27564 * 8 6 5 10 10 C 1.38161 * 120.03825 * 0.50542 * 8 6 5 11 11 C 1.50701 * 120.01936 * 179.74567 * 10 8 6 12 12 C 1.50699 * 115.56205 * 282.14652 * 11 10 8 13 13 H 1.08000 * 119.99565 * 140.28221 * 12 11 10 14 14 C 1.37878 * 120.00131 * 320.28579 * 12 11 10 15 15 N 1.31516 * 119.99880 * 348.48134 * 14 12 11 16 16 Si 1.86796 * 119.99932 * 168.47994 * 14 12 11 17 17 H 1.48507 * 109.47037 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47153 * 119.99766 * 16 14 12 19 19 H 1.48496 * 109.47399 * 239.99985 * 16 14 12 20 20 C 1.53007 * 117.49673 * 136.45905 * 11 10 8 21 21 C 1.53001 * 117.49859 * 67.83921 * 11 10 8 22 22 H 1.09004 * 109.47057 * 60.00335 * 1 2 3 23 23 H 1.08997 * 109.47321 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47256 * 300.00650 * 1 2 3 25 25 H 1.07997 * 120.01476 * 0.02562 * 4 3 2 26 26 H 1.07994 * 119.97889 * 180.02562 * 5 4 3 27 27 H 1.09001 * 109.46724 * 274.81589 * 9 8 6 28 28 H 1.08997 * 109.47453 * 34.82437 * 9 8 6 29 29 H 1.09000 * 109.46626 * 154.82078 * 9 8 6 30 30 H 0.96993 * 119.99659 * 185.00486 * 15 14 12 31 31 H 1.08999 * 117.49588 * 0.02562 * 20 11 10 32 32 H 1.08996 * 117.49804 * 145.02005 * 20 11 10 33 33 H 1.08999 * 117.50169 * 214.97950 * 21 11 10 34 34 H 1.09004 * 117.49861 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2913 2.3753 -0.0006 5 6 1.9202 3.6049 -0.0011 6 6 3.3022 3.6763 -0.0005 7 17 4.0904 5.2231 -0.0005 8 6 4.0566 2.5165 0.0054 9 6 5.5614 2.5971 0.0123 10 6 3.4311 1.2846 0.0001 11 6 4.2533 0.0216 0.0008 12 6 4.8532 -0.3644 -1.3267 13 1 5.8554 -0.7644 -1.3704 14 6 4.1227 -0.2068 -2.4853 15 7 2.8369 0.0617 -2.4206 16 14 4.9593 -0.3746 -4.1470 17 1 6.3995 -0.6771 -3.9478 18 1 4.3237 -1.4772 -4.9122 19 1 4.8198 0.8964 -4.9021 20 6 3.8103 -1.1092 0.9315 21 6 5.0626 -0.2939 1.2603 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.2127 2.3199 -0.0006 26 1 1.3331 4.5113 -0.0012 27 1 5.9244 2.7006 -1.0103 28 1 5.8764 3.4601 0.5988 29 1 5.9718 1.6887 0.4533 30 1 2.3081 0.1008 -3.2328 31 1 2.9241 -0.9397 1.5429 32 1 3.9529 -2.1322 0.5836 33 1 6.0290 -0.7806 1.1289 34 1 5.0007 0.4123 2.0883 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260455959.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:13 Heat of formation + Delta-G solvation = -7.759929 kcal Electronic energy + Delta-G solvation = -18891.693701 eV Core-core repulsion = 16009.122412 eV Total energy + Delta-G solvation = -2882.571289 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.10526 -38.58930 -37.82560 -36.65705 -34.02953 -33.02545 -30.73861 -28.10509 -27.61312 -27.20678 -23.88429 -22.88874 -21.91914 -20.91913 -18.69899 -17.99727 -17.08341 -16.58983 -16.56535 -16.19968 -15.49214 -15.09468 -14.66783 -14.55724 -14.42755 -13.64795 -13.20204 -13.12375 -12.98467 -12.87774 -12.66903 -12.58195 -12.48973 -12.27713 -12.06386 -11.98206 -11.65652 -11.23927 -11.08887 -11.00970 -10.44148 -10.00591 -9.31150 -8.63225 -7.88707 -6.03607 0.60412 0.69573 1.39439 1.42076 1.45275 1.52712 2.45969 2.78759 3.05500 3.13729 3.72274 4.01216 4.10523 4.34719 4.39819 4.53991 4.56999 4.64165 4.69199 4.77895 4.83983 4.92761 4.97667 5.01537 5.04311 5.28003 5.36259 5.43916 5.52470 5.63487 5.70102 5.81847 5.86624 6.13060 6.47076 6.89552 6.98229 7.54624 9.03004 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.014907 B = 0.010118 C = 0.008451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.845854 B = 2766.615414 C = 3312.249423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.295 6.295 3 C 0.179 3.821 4 C -0.229 4.229 5 C -0.088 4.088 6 C -0.096 4.096 7 Cl -0.080 7.080 8 C -0.058 4.058 9 C -0.101 4.101 10 C -0.034 4.034 11 C 0.077 3.923 12 C -0.505 4.505 13 H 0.051 0.949 14 C 0.040 3.960 15 N -0.867 5.867 16 Si 0.932 3.068 17 H -0.270 1.270 18 H -0.285 1.285 19 H -0.287 1.287 20 C -0.182 4.182 21 C -0.190 4.190 22 H 0.047 0.953 23 H 0.102 0.898 24 H 0.063 0.937 25 H 0.147 0.853 26 H 0.147 0.853 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.253 0.747 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.645 5.413 5.480 8.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.207 6.207 3 C 0.132 3.868 4 C -0.248 4.248 5 C -0.107 4.107 6 C -0.123 4.123 7 Cl -0.052 7.052 8 C -0.059 4.059 9 C -0.158 4.158 10 C -0.035 4.035 11 C 0.076 3.924 12 C -0.542 4.542 13 H 0.069 0.931 14 C -0.164 4.164 15 N -0.502 5.502 16 Si 0.759 3.241 17 H -0.194 1.194 18 H -0.211 1.211 19 H -0.213 1.213 20 C -0.220 4.220 21 C -0.227 4.227 22 H 0.066 0.934 23 H 0.121 0.879 24 H 0.081 0.919 25 H 0.165 0.835 26 H 0.164 0.836 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.651 5.437 5.355 8.460 hybrid contribution 0.072 -0.091 -1.286 1.291 sum -3.578 5.346 4.070 7.613 Atomic orbital electron populations 1.23115 0.79070 1.04092 1.00939 1.86300 1.20899 1.26347 1.87112 1.18805 0.91721 0.84499 0.91747 1.21227 1.00532 0.91487 1.11582 1.20763 0.91945 0.98181 0.99763 1.20556 0.92896 0.85404 1.13415 1.98268 1.81185 1.28252 1.97457 1.19474 0.97085 0.90384 0.98995 1.20709 0.90256 1.02927 1.01862 1.18550 0.90658 0.93782 1.00532 1.17396 0.95839 0.89780 0.89368 1.20587 1.00087 1.43337 0.90199 0.93063 1.25445 0.95272 0.94694 1.00967 1.70132 1.05424 1.47062 1.27593 0.85908 0.79374 0.77136 0.81633 1.19446 1.21115 1.21346 1.22804 0.96353 0.97002 1.05845 1.22979 0.95296 1.04107 1.00322 0.93425 0.87938 0.91870 0.83546 0.83551 0.92341 0.90760 0.90686 0.93744 0.90920 0.91697 0.89951 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 9.81 113.37 1.11 1.82 16 2 O -0.30 -12.53 7.29 -92.62 -0.68 -13.21 16 3 C 0.18 7.75 5.17 22.50 0.12 7.86 16 4 C -0.23 -8.42 9.04 22.36 0.20 -8.21 16 5 C -0.09 -3.08 9.82 22.28 0.22 -2.86 16 6 C -0.10 -3.65 6.31 22.33 0.14 -3.50 16 7 Cl -0.08 -2.58 27.39 -2.72 -0.07 -2.65 16 8 C -0.06 -2.48 5.88 -19.86 -0.12 -2.59 16 9 C -0.10 -3.91 9.07 71.24 0.65 -3.27 16 10 C -0.03 -1.57 3.90 -19.77 -0.08 -1.64 16 11 C 0.08 3.67 0.77 -53.67 -0.04 3.63 16 12 C -0.50 -26.76 8.87 25.60 0.23 -26.53 16 13 H 0.05 2.74 7.84 -2.91 -0.02 2.72 16 14 C 0.04 2.10 5.23 84.65 0.44 2.55 16 15 N -0.87 -46.80 10.19 21.45 0.22 -46.58 16 16 Si 0.93 43.01 29.56 68.60 2.03 45.04 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 20 C -0.18 -8.22 8.82 30.60 0.27 -7.95 16 21 C -0.19 -7.92 8.09 30.59 0.25 -7.67 16 22 H 0.05 1.44 7.66 -2.38 -0.02 1.42 16 23 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 24 H 0.06 1.59 7.66 -2.39 -0.02 1.57 16 25 H 0.15 4.41 6.30 -2.91 -0.02 4.40 16 26 H 0.15 4.15 8.06 -2.91 -0.02 4.12 16 27 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.07 2.47 7.11 -2.39 -0.02 2.46 16 29 H 0.07 2.95 5.36 -2.39 -0.01 2.94 16 30 H 0.25 13.36 8.32 -92.71 -0.77 12.58 16 31 H 0.07 3.17 7.11 -2.39 -0.02 3.16 16 32 H 0.06 3.01 8.14 -2.39 -0.02 2.99 16 33 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 34 H 0.08 3.18 8.14 -2.38 -0.02 3.16 16 Total: -1.00 -58.33 292.66 5.99 -52.34 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 1.10 Total: 13.45 kcal Atomic # 6 Polarization: -51.77 SS G_CDS: 3.39 Total: -48.38 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.22 Total: -46.58 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -0.68 Total: -13.21 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 17 Polarization: -2.58 SS G_CDS: -0.07 Total: -2.65 kcal Total: -58.33 5.99 -52.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260455959.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.578 kcal (2) G-P(sol) polarization free energy of solvation -58.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds