Wall clock time and date at job start Mon Mar 30 2020 07:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76197 * 103.00120 * 2 1 4 4 C 1.39016 * 120.06351 * 0.02562 * 3 2 1 5 5 C 1.38078 * 119.96535 * 179.68674 * 4 3 2 6 6 C 1.38289 * 120.10494 * 0.56647 * 5 4 3 7 7 C 1.50694 * 119.93034 * 179.73001 * 6 5 4 8 8 H 1.09007 * 109.47003 * 179.72649 * 7 6 5 9 9 C 1.50697 * 109.47451 * 299.72218 * 7 6 5 10 10 H 1.08003 * 119.99442 * 94.64524 * 9 7 6 11 11 C 1.37874 * 120.00445 * 274.66050 * 9 7 6 12 12 N 1.31511 * 120.00151 * 5.00362 * 11 9 7 13 13 Si 1.86804 * 120.00055 * 185.01252 * 11 9 7 14 14 H 1.48497 * 109.47075 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47216 * 119.99544 * 13 11 9 16 16 H 1.48500 * 109.46793 * 239.99226 * 13 11 9 17 17 C 1.52996 * 109.47518 * 59.73088 * 7 6 5 18 18 C 1.53002 * 117.49988 * 174.54668 * 17 7 6 19 19 C 1.52996 * 60.03123 * 252.49506 * 18 17 7 20 20 C 1.38515 * 120.13099 * 359.45408 * 6 5 4 21 21 F 1.35104 * 119.98196 * 180.27133 * 20 6 5 22 22 C 1.38319 * 120.03234 * 0.25371 * 20 6 5 23 23 H 1.08997 * 109.47489 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47003 * 300.00045 * 1 2 3 25 25 H 1.09007 * 109.47210 * 60.00035 * 1 2 3 26 26 H 1.07993 * 120.02265 * 359.97438 * 4 3 2 27 27 H 1.07997 * 119.94929 * 180.32313 * 5 4 3 28 28 H 0.96996 * 120.00669 * 180.02562 * 12 11 9 29 29 H 1.09002 * 115.54695 * 320.21372 * 17 7 6 30 30 H 1.09002 * 117.49569 * 0.02562 * 18 17 7 31 31 H 1.09003 * 117.49409 * 144.99280 * 18 17 7 32 32 H 1.09001 * 117.49641 * 107.50230 * 19 18 17 33 33 H 1.08999 * 117.49838 * 252.51714 * 19 18 17 34 34 H 1.07994 * 120.05536 * 180.02562 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1948 2.6660 0.0005 5 6 1.5077 4.0109 0.0071 6 6 2.8301 4.4154 0.0013 7 6 3.1671 5.8841 0.0023 8 1 4.2501 6.0084 0.0021 9 6 2.5868 6.5336 -1.2275 10 1 1.6204 7.0133 -1.1797 11 6 3.2895 6.5152 -2.4136 12 7 4.4192 5.8473 -2.4984 13 14 2.6369 7.4391 -3.9003 14 1 1.3574 8.1048 -3.5468 15 1 3.6276 8.4619 -4.3215 16 1 2.4067 6.4846 -5.0143 17 6 2.5787 6.5416 1.2522 18 6 2.9201 8.0116 1.5044 19 6 3.5480 6.9210 2.3746 20 6 3.8454 3.4732 0.0003 21 9 5.1364 3.8717 0.0001 22 6 3.5383 2.1245 -0.0002 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 0.1616 2.3519 0.0005 27 1 0.7185 4.7481 0.0128 28 1 4.9137 5.8346 -3.3327 29 1 1.5846 6.1993 1.5396 30 1 3.5636 8.5103 0.7796 31 1 2.1505 8.6363 1.9578 32 1 4.6049 6.7021 2.2225 33 1 3.1913 6.8280 3.4004 34 1 4.3296 1.3896 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260458741.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:48 Heat of formation + Delta-G solvation = -7.884153 kcal Electronic energy + Delta-G solvation = -17948.474490 eV Core-core repulsion = 15080.314310 eV Total energy + Delta-G solvation = -2868.160180 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.084 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.81245 -38.44611 -36.54246 -33.07875 -31.09264 -30.28040 -28.62093 -27.17623 -23.85226 -22.24693 -21.55221 -21.26155 -19.14148 -17.54932 -16.52468 -15.62973 -15.54749 -15.07875 -14.80872 -14.50260 -14.33051 -13.66321 -13.55921 -13.22847 -12.81942 -12.61202 -12.38676 -12.02859 -11.77775 -11.43141 -11.09859 -10.90825 -10.78826 -10.67399 -10.60703 -10.05126 -9.93300 -9.55544 -9.31873 -8.90603 -8.61679 -8.48400 -8.03944 -6.92211 -6.08018 -4.14655 1.76603 1.87418 1.94725 2.65146 3.25495 3.34274 3.36866 4.28193 4.39097 4.72544 5.08351 5.10658 5.20981 5.23409 5.41284 5.48047 5.60304 5.68883 5.81108 5.84655 6.07519 6.16184 6.27537 6.35391 6.44642 6.64582 6.72720 6.76038 6.89572 6.95649 7.16739 7.26532 7.69943 7.70915 7.87429 8.24570 8.90583 9.49210 10.98043 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.006958 C = 0.006079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.868057 B = 4023.283887 C = 4604.559124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.139 6.139 3 C -0.089 4.089 4 C -0.149 4.149 5 C -0.074 4.074 6 C -0.042 4.042 7 C 0.095 3.905 8 H 0.065 0.935 9 C -0.505 4.505 10 H 0.061 0.939 11 C 0.066 3.934 12 N -0.875 5.875 13 Si 0.890 3.110 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.285 1.285 17 C -0.120 4.120 18 C -0.170 4.170 19 C -0.200 4.200 20 C 0.120 3.880 21 F -0.130 7.130 22 C -0.142 4.142 23 H 0.101 0.899 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.116 0.884 27 H 0.127 0.873 28 H 0.262 0.738 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.919 -6.532 6.123 10.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.101 5.899 3 C -0.201 4.201 4 C -0.172 4.172 5 C -0.094 4.094 6 C -0.046 4.046 7 C 0.076 3.924 8 H 0.083 0.917 9 C -0.543 4.543 10 H 0.079 0.921 11 C -0.138 4.138 12 N -0.511 5.511 13 Si 0.718 3.282 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.211 1.211 17 C -0.139 4.139 18 C -0.207 4.207 19 C -0.237 4.237 20 C 0.099 3.901 21 F -0.109 7.109 22 C -0.166 4.166 23 H 0.120 0.880 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.134 0.866 27 H 0.145 0.855 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.069 -7.604 5.990 10.927 hybrid contribution -0.900 1.556 -1.078 2.096 sum -5.969 -6.048 4.912 9.815 Atomic orbital electron populations 1.23581 0.95202 1.06342 1.05620 1.85145 1.06026 1.04843 1.93905 1.20997 0.95685 0.95250 1.08190 1.21005 0.97329 0.93413 1.05501 1.20701 0.96249 0.94156 0.98321 1.20818 0.91516 0.98586 0.93635 1.17601 0.98714 0.85112 0.90975 0.91674 1.20910 1.04862 1.35183 0.93298 0.92095 1.25034 0.94924 0.95023 0.98834 1.69985 1.14792 1.39762 1.26538 0.86562 0.79075 0.79770 0.82814 1.19628 1.20896 1.21095 1.22443 0.97858 0.96937 0.96618 1.22717 1.03213 0.92217 1.02520 1.23003 0.99231 1.06135 0.95346 1.17358 0.79130 0.91443 1.02148 1.91468 1.34450 1.91338 1.93596 1.20466 0.95193 0.94538 1.06443 0.87998 0.89948 0.89873 0.86639 0.85502 0.92775 0.89626 0.88672 0.90417 0.89444 0.90384 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.15 101.05 0.92 -0.54 16 2 S -0.14 -2.03 22.56 -107.50 -2.43 -4.45 16 3 C -0.09 -1.61 6.11 -39.05 -0.24 -1.84 16 4 C -0.15 -2.62 9.36 -39.35 -0.37 -2.99 16 5 C -0.07 -1.48 8.65 -39.62 -0.34 -1.82 16 6 C -0.04 -0.95 4.78 -104.50 -0.50 -1.45 16 7 C 0.09 2.24 1.96 -92.93 -0.18 2.06 16 8 H 0.07 1.75 6.47 -51.92 -0.34 1.41 16 9 C -0.50 -12.99 7.72 -34.44 -0.27 -13.26 16 10 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 11 C 0.07 1.76 5.45 -17.82 -0.10 1.66 16 12 N -0.87 -24.64 13.01 55.43 0.72 -23.92 16 13 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 C -0.12 -2.42 4.93 -90.58 -0.45 -2.86 16 18 C -0.17 -3.13 10.01 -26.73 -0.27 -3.40 16 19 C -0.20 -3.59 10.18 -26.70 -0.27 -3.86 16 20 C 0.12 2.71 7.24 -39.45 -0.29 2.42 16 21 F -0.13 -3.12 16.18 2.25 0.04 -3.08 16 22 C -0.14 -2.82 9.77 -39.30 -0.38 -3.21 16 23 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.08 0.81 7.75 -51.92 -0.40 0.41 16 25 H 0.08 0.87 7.75 -51.92 -0.40 0.47 16 26 H 0.12 1.67 5.88 -52.49 -0.31 1.36 16 27 H 0.13 2.36 7.78 -52.49 -0.41 1.95 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.09 1.61 7.40 -51.93 -0.38 1.23 16 30 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.09 1.63 8.09 -51.93 -0.42 1.21 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 305.79 15.07 4.61 4.61 Total: -1.00 -28.06 305.79 -9.13 -37.19 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -4.32 Total: 2.97 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: -2.73 Total: -29.10 kcal Atomic # 7 Polarization: -24.64 SS G_CDS: 0.72 Total: -23.92 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.04 Total: -3.08 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: -2.03 SS G_CDS: -2.43 Total: -4.45 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.06 -9.13 -37.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260458741.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.304 kcal (2) G-P(sol) polarization free energy of solvation -28.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds