Wall clock time and date at job start Mon Mar 30 2020 06:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 120.00069 * 2 1 4 4 H 1.48501 * 109.46943 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.46813 * 29.99666 * 3 2 1 6 6 H 1.48494 * 109.47254 * 149.99791 * 3 2 1 7 7 C 1.37877 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00276 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99996 * 180.02562 * 7 2 1 10 10 C 1.50705 * 109.47243 * 179.97438 * 9 7 2 11 11 C 1.38274 * 119.93784 * 89.99481 * 10 9 7 12 12 C 1.38157 * 120.07689 * 180.02562 * 11 10 9 13 13 C 1.38708 * 119.95480 * 0.02562 * 12 11 10 14 14 O 1.35922 * 120.05948 * 179.97438 * 13 12 11 15 15 C 1.42901 * 116.99971 * 0.02562 * 14 13 12 16 16 C 1.53001 * 109.47280 * 179.97438 * 15 14 13 17 17 C 1.53000 * 117.50223 * 185.00165 * 16 15 14 18 18 C 1.52997 * 117.49889 * 116.37426 * 16 15 14 19 19 C 1.38816 * 119.88209 * 0.27840 * 13 12 11 20 20 Cl 1.73596 * 120.03982 * 179.70119 * 19 13 12 21 21 C 1.38240 * 119.94155 * 270.02747 * 10 9 7 22 22 H 0.96990 * 120.00189 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47400 * 59.99980 * 9 7 2 24 24 H 1.09002 * 109.47333 * 299.99759 * 9 7 2 25 25 H 1.08000 * 119.96553 * 359.97438 * 11 10 9 26 26 H 1.07995 * 120.02526 * 179.97438 * 12 11 10 27 27 H 1.08999 * 109.47069 * 59.99976 * 15 14 13 28 28 H 1.08991 * 109.47296 * 299.99539 * 15 14 13 29 29 H 1.09002 * 115.55911 * 330.68854 * 16 15 14 30 30 H 1.08990 * 117.49990 * 145.01974 * 17 16 15 31 31 H 1.09004 * 117.49237 * 359.97438 * 17 16 15 32 32 H 1.08999 * 117.49685 * 0.02562 * 18 16 15 33 33 H 1.08999 * 117.52022 * 214.97106 * 18 16 15 34 34 H 1.08007 * 119.98228 * 359.97438 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0140 -2.6148 0.0023 11 6 4.2445 -3.2662 -1.1954 12 6 4.7046 -4.5689 -1.1977 13 6 4.9351 -5.2241 0.0029 14 8 5.3872 -6.5059 0.0031 15 6 5.6043 -7.1175 -1.2700 16 6 6.1093 -8.5478 -1.0694 17 6 6.5140 -9.3357 -2.3169 18 6 5.2228 -9.6875 -1.5753 19 6 4.6971 -4.5706 1.2042 20 17 4.9768 -5.3894 2.7092 21 6 4.2431 -3.2647 1.2007 22 1 -0.4850 0.8399 -0.0004 23 1 3.8746 -0.6799 0.8911 24 1 3.8753 -0.6803 -0.8889 25 1 4.0638 -2.7564 -2.1302 26 1 4.8839 -5.0770 -2.1337 27 1 6.3466 -6.5452 -1.8262 28 1 4.6681 -7.1374 -1.8279 29 1 6.6804 -8.7212 -0.1573 30 1 7.3513 -10.0275 -2.2255 31 1 6.4201 -8.8352 -3.2806 32 1 4.2800 -9.4183 -2.0515 33 1 5.2105 -10.6110 -0.9965 34 1 4.0622 -2.7537 2.1349 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260461076.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:02 Heat of formation + Delta-G solvation = -5.743086 kcal Electronic energy + Delta-G solvation = -17026.951386 eV Core-core repulsion = 14144.467554 eV Total energy + Delta-G solvation = -2882.483832 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.98134 -38.05900 -36.72738 -36.05608 -33.17529 -31.11855 -30.46142 -28.20464 -26.68651 -22.92682 -22.67018 -22.64588 -20.74511 -20.32100 -18.07342 -16.81933 -16.46435 -15.82978 -15.42347 -15.06183 -14.45372 -14.22077 -13.87444 -13.51746 -13.09457 -12.93540 -12.53111 -11.89508 -11.81224 -11.75330 -11.55123 -11.40943 -11.02279 -10.84286 -10.77782 -10.58054 -10.45213 -10.20638 -10.04782 -9.89020 -9.39556 -8.62228 -8.44589 -7.54918 -6.10905 -4.10874 1.59042 1.80854 2.54325 3.08148 3.25941 3.34459 3.36606 3.57020 4.11036 4.38052 4.47803 4.58937 4.72013 4.98086 5.08842 5.12746 5.22409 5.32686 5.34931 5.41651 5.59233 5.68653 5.80537 5.82801 5.83934 5.96912 6.13238 6.49593 6.69892 6.78891 6.91303 7.12326 7.41279 7.54760 7.64637 8.44881 8.94144 9.48790 11.01932 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.027047 B = 0.004270 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.000762 B = 6555.467309 C = 7115.196787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.516 4.516 8 H 0.074 0.926 9 C 0.018 3.982 10 C -0.051 4.051 11 C -0.078 4.078 12 C -0.197 4.197 13 C 0.111 3.889 14 O -0.306 6.306 15 C 0.091 3.909 16 C -0.154 4.154 17 C -0.172 4.172 18 C -0.176 4.176 19 C -0.062 4.062 20 Cl -0.075 7.075 21 C -0.076 4.076 22 H 0.265 0.735 23 H 0.030 0.970 24 H 0.026 0.974 25 H 0.129 0.871 26 H 0.127 0.873 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.111 -14.455 -3.008 19.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.554 4.554 8 H 0.092 0.908 9 C -0.019 4.019 10 C -0.052 4.052 11 C -0.096 4.096 12 C -0.216 4.216 13 C 0.065 3.935 14 O -0.220 6.220 15 C 0.016 3.984 16 C -0.172 4.172 17 C -0.209 4.209 18 C -0.213 4.213 19 C -0.089 4.089 20 Cl -0.047 7.047 21 C -0.094 4.094 22 H 0.075 0.925 23 H 0.048 0.952 24 H 0.044 0.956 25 H 0.147 0.853 26 H 0.145 0.855 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.134 0.866 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 13.015 -14.541 -2.711 19.702 hybrid contribution 0.213 0.837 -0.136 0.874 sum 13.227 -13.704 -2.846 19.258 Atomic orbital electron populations 1.69894 1.06278 1.27050 1.50420 1.24997 0.94736 0.99029 0.94412 0.86814 0.80450 0.83669 0.78647 1.20151 1.21208 1.18846 1.20936 0.88183 0.94736 1.51572 0.90757 1.18777 0.97505 0.87963 0.97631 1.20177 0.95106 0.98656 0.91225 1.20989 0.96578 0.93315 0.98753 1.21086 1.07725 0.96947 0.95859 1.18444 0.98240 0.84128 0.92675 1.86069 1.81054 1.24086 1.30804 1.22241 1.00027 0.91606 0.84520 1.22090 1.04413 0.91012 0.99652 1.22985 0.99146 1.02961 0.95782 1.23100 0.95055 0.99507 1.03659 1.20120 1.10138 0.94030 0.84649 1.98318 1.95185 1.79336 1.31819 1.20869 0.97602 0.91257 0.99695 0.92536 0.95182 0.95584 0.85328 0.85490 0.91731 0.91910 0.86603 0.88294 0.88530 0.88461 0.88484 0.84516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 20.90 27.47 -169.99 -4.67 16.23 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 7 C -0.52 -14.31 9.65 -34.44 -0.33 -14.64 16 8 H 0.07 2.27 7.98 -52.49 -0.42 1.85 16 9 C 0.02 0.42 4.17 -29.03 -0.12 0.30 16 10 C -0.05 -1.04 5.07 -104.61 -0.53 -1.57 16 11 C -0.08 -1.40 9.69 -39.60 -0.38 -1.78 16 12 C -0.20 -3.11 9.04 -39.44 -0.36 -3.47 16 13 C 0.11 1.85 6.68 -39.19 -0.26 1.58 16 14 O -0.31 -4.61 9.60 -19.49 -0.19 -4.79 16 15 C 0.09 1.03 5.02 37.16 0.19 1.22 16 16 C -0.15 -1.47 6.06 -90.62 -0.55 -2.02 16 17 C -0.17 -1.27 10.25 -26.73 -0.27 -1.54 16 18 C -0.18 -1.46 10.18 -26.73 -0.27 -1.73 16 19 C -0.06 -1.11 6.33 -39.36 -0.25 -1.36 16 20 Cl -0.08 -1.22 28.50 -51.86 -1.48 -2.70 16 21 C -0.08 -1.45 9.48 -39.57 -0.38 -1.82 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 23 H 0.03 0.69 7.14 -51.93 -0.37 0.31 16 24 H 0.03 0.58 7.51 -51.93 -0.39 0.19 16 25 H 0.13 2.14 8.06 -52.49 -0.42 1.71 16 26 H 0.13 1.61 6.30 -52.49 -0.33 1.28 16 27 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 28 H 0.06 0.68 7.39 -51.93 -0.38 0.29 16 29 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.80 8.03 -51.93 -0.42 0.38 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.14 2.53 8.06 -52.48 -0.42 2.11 16 LS Contribution 306.39 15.07 4.62 4.62 Total: -1.00 -30.09 306.39 -8.97 -39.07 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -4.41 Total: -1.11 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -3.62 Total: -24.94 kcal Atomic # 7 Polarization: -27.15 SS G_CDS: 0.77 Total: -26.37 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.19 Total: -4.79 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.67 Total: 16.23 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -1.48 Total: -2.70 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.09 -8.97 -39.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260461076.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.323 kcal (2) G-P(sol) polarization free energy of solvation -30.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds