Wall clock time and date at job start Mon Mar 30 2020 06:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 120.00069 * 2 1 4 4 H 1.48501 * 109.46943 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.46813 * 29.99666 * 3 2 1 6 6 H 1.48494 * 109.47254 * 149.99791 * 3 2 1 7 7 C 1.37877 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00276 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99996 * 180.02562 * 7 2 1 10 10 C 1.50705 * 109.47243 * 179.97438 * 9 7 2 11 11 C 1.38274 * 119.93784 * 89.99481 * 10 9 7 12 12 C 1.38157 * 120.07689 * 180.02562 * 11 10 9 13 13 C 1.38708 * 119.95480 * 0.02562 * 12 11 10 14 14 O 1.35922 * 120.05948 * 179.97438 * 13 12 11 15 15 C 1.42901 * 116.99971 * 0.02562 * 14 13 12 16 16 C 1.53001 * 109.47280 * 179.97438 * 15 14 13 17 17 C 1.53000 * 117.50223 * 185.00165 * 16 15 14 18 18 C 1.52997 * 117.49889 * 116.37426 * 16 15 14 19 19 C 1.38816 * 119.88209 * 0.27840 * 13 12 11 20 20 Cl 1.73596 * 120.03982 * 179.70119 * 19 13 12 21 21 C 1.38240 * 119.94155 * 270.02747 * 10 9 7 22 22 H 0.96990 * 120.00189 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47400 * 59.99980 * 9 7 2 24 24 H 1.09002 * 109.47333 * 299.99759 * 9 7 2 25 25 H 1.08000 * 119.96553 * 359.97438 * 11 10 9 26 26 H 1.07995 * 120.02526 * 179.97438 * 12 11 10 27 27 H 1.08999 * 109.47069 * 59.99976 * 15 14 13 28 28 H 1.08991 * 109.47296 * 299.99539 * 15 14 13 29 29 H 1.09002 * 115.55911 * 330.68854 * 16 15 14 30 30 H 1.08990 * 117.49990 * 145.01974 * 17 16 15 31 31 H 1.09004 * 117.49237 * 359.97438 * 17 16 15 32 32 H 1.08999 * 117.49685 * 0.02562 * 18 16 15 33 33 H 1.08999 * 117.52022 * 214.97106 * 18 16 15 34 34 H 1.08007 * 119.98228 * 359.97438 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0140 -2.6148 0.0023 11 6 4.2445 -3.2662 -1.1954 12 6 4.7046 -4.5689 -1.1977 13 6 4.9351 -5.2241 0.0029 14 8 5.3872 -6.5059 0.0031 15 6 5.6043 -7.1175 -1.2700 16 6 6.1093 -8.5478 -1.0694 17 6 6.5140 -9.3357 -2.3169 18 6 5.2228 -9.6875 -1.5753 19 6 4.6971 -4.5706 1.2042 20 17 4.9768 -5.3894 2.7092 21 6 4.2431 -3.2647 1.2007 22 1 -0.4850 0.8399 -0.0004 23 1 3.8746 -0.6799 0.8911 24 1 3.8753 -0.6803 -0.8889 25 1 4.0638 -2.7564 -2.1302 26 1 4.8839 -5.0770 -2.1337 27 1 6.3466 -6.5452 -1.8262 28 1 4.6681 -7.1374 -1.8279 29 1 6.6804 -8.7212 -0.1573 30 1 7.3513 -10.0275 -2.2255 31 1 6.4201 -8.8352 -3.2806 32 1 4.2800 -9.4183 -2.0515 33 1 5.2105 -10.6110 -0.9965 34 1 4.0622 -2.7537 2.1349 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260461076.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:02 Heat of formation + Delta-G solvation = -21.337734 kcal Electronic energy + Delta-G solvation = -17027.627620 eV Core-core repulsion = 14144.467554 eV Total energy + Delta-G solvation = -2883.160067 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.21811 -39.15030 -37.66518 -37.39566 -35.14562 -32.86179 -31.81661 -29.51347 -28.05648 -24.69490 -23.92095 -23.25903 -22.02735 -21.41957 -19.27111 -18.95154 -17.50956 -16.94304 -16.86821 -16.23021 -15.98643 -15.40869 -15.02895 -14.96284 -14.51884 -14.32983 -14.04786 -13.57435 -13.40694 -12.68863 -12.60994 -12.52357 -12.37985 -12.30828 -12.02765 -11.89401 -11.75429 -11.61949 -11.46444 -11.36649 -10.87041 -10.76810 -9.82233 -8.95437 -8.27756 -6.33314 0.20769 0.41035 1.19390 1.39197 1.41685 1.53068 2.05261 2.37492 2.69450 2.88325 3.06904 3.68336 3.86110 3.90124 3.97629 4.05746 4.20212 4.25574 4.40613 4.46868 4.53627 4.57703 4.73595 4.78567 5.00900 5.05829 5.10711 5.16094 5.20418 5.24383 5.29020 5.55521 5.72278 5.83702 6.26694 6.36185 6.73373 7.30373 8.88729 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.027047 B = 0.004270 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.000762 B = 6555.467309 C = 7115.196787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.008 3.992 3 Si 0.950 3.050 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.244 1.244 7 C -0.521 4.521 8 H 0.028 0.972 9 C 0.025 3.975 10 C -0.083 4.083 11 C -0.081 4.081 12 C -0.187 4.187 13 C 0.117 3.883 14 O -0.315 6.315 15 C 0.083 3.917 16 C -0.172 4.172 17 C -0.153 4.153 18 C -0.181 4.181 19 C -0.077 4.077 20 Cl -0.066 7.066 21 C -0.085 4.085 22 H 0.267 0.733 23 H 0.032 0.968 24 H 0.039 0.961 25 H 0.141 0.859 26 H 0.163 0.837 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.255 -15.037 -4.232 21.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.189 4.189 3 Si 0.773 3.227 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.167 1.167 7 C -0.559 4.559 8 H 0.046 0.954 9 C -0.013 4.013 10 C -0.083 4.083 11 C -0.099 4.099 12 C -0.206 4.206 13 C 0.071 3.929 14 O -0.229 6.229 15 C 0.009 3.991 16 C -0.190 4.190 17 C -0.190 4.190 18 C -0.218 4.218 19 C -0.104 4.104 20 Cl -0.037 7.037 21 C -0.104 4.104 22 H 0.076 0.924 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.158 0.842 26 H 0.181 0.819 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.126 0.874 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 15.184 -15.151 -3.939 21.809 hybrid contribution -0.460 0.798 0.241 0.952 sum 14.724 -14.353 -3.698 20.892 Atomic orbital electron populations 1.70058 1.08392 1.28263 1.52309 1.25983 0.95564 1.03407 0.93966 0.85661 0.79546 0.78057 0.79454 1.18736 1.21217 1.16726 1.21182 0.90868 0.92994 1.50832 0.95375 1.18621 0.94162 0.90367 0.98102 1.20038 0.97678 0.97868 0.92730 1.21166 0.96195 0.94216 0.98322 1.21379 1.06125 0.96020 0.97061 1.18575 0.96974 0.84829 0.92502 1.86082 1.80467 1.23087 1.33313 1.22563 1.00919 0.92496 0.83160 1.22066 1.05717 0.90446 1.00764 1.23100 0.98883 1.01877 0.95116 1.23191 0.95526 0.99174 1.03871 1.20201 1.10531 0.93907 0.85767 1.98313 1.95115 1.78972 1.31286 1.20844 0.98173 0.92039 0.99314 0.92397 0.94940 0.94292 0.84167 0.81913 0.90214 0.91213 0.87364 0.86959 0.87434 0.88463 0.87891 0.84957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.09 13.96 21.45 0.30 -58.79 16 2 C 0.01 0.45 5.47 84.65 0.46 0.91 16 3 Si 0.95 42.91 27.47 68.60 1.88 44.80 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 7 C -0.52 -29.60 9.65 25.60 0.25 -29.35 16 8 H 0.03 1.80 7.98 -2.91 -0.02 1.77 16 9 C 0.02 1.13 4.17 29.10 0.12 1.25 16 10 C -0.08 -3.34 5.07 -19.85 -0.10 -3.44 16 11 C -0.08 -2.79 9.69 22.26 0.22 -2.58 16 12 C -0.19 -5.49 9.04 22.36 0.20 -5.29 16 13 C 0.12 3.73 6.68 22.52 0.15 3.88 16 14 O -0.32 -8.91 9.60 -92.67 -0.89 -9.80 16 15 C 0.08 1.66 5.02 71.98 0.36 2.02 16 16 C -0.17 -2.91 6.06 -10.79 -0.07 -2.97 16 17 C -0.15 -1.80 10.25 30.60 0.31 -1.48 16 18 C -0.18 -2.58 10.18 30.60 0.31 -2.27 16 19 C -0.08 -2.71 6.33 22.41 0.14 -2.56 16 20 Cl -0.07 -2.10 28.50 -2.72 -0.08 -2.18 16 21 C -0.08 -3.27 9.48 22.28 0.21 -3.06 16 22 H 0.27 15.46 8.31 -92.72 -0.77 14.69 16 23 H 0.03 1.45 7.14 -2.39 -0.02 1.44 16 24 H 0.04 1.67 7.51 -2.39 -0.02 1.65 16 25 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 26 H 0.16 3.52 6.30 -2.91 -0.02 3.50 16 27 H 0.08 1.36 7.66 -2.39 -0.02 1.34 16 28 H 0.07 1.30 7.39 -2.39 -0.02 1.29 16 29 H 0.11 1.99 8.14 -2.39 -0.02 1.98 16 30 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.10 1.39 8.03 -2.39 -0.02 1.37 16 33 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.13 5.03 8.06 -2.91 -0.02 5.01 16 Total: -1.00 -66.13 306.39 4.83 -61.31 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 1.04 Total: 9.60 kcal Atomic # 6 Polarization: -47.52 SS G_CDS: 2.57 Total: -44.94 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 0.30 Total: -58.79 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -0.89 Total: -9.80 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.88 Total: 44.80 kcal Atomic # 17 Polarization: -2.10 SS G_CDS: -0.08 Total: -2.18 kcal Total: -66.13 4.83 -61.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260461076.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.969 kcal (2) G-P(sol) polarization free energy of solvation -66.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds