Wall clock time and date at job start Mon Mar 30 2020 06:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38192 * 119.96399 * 2 1 4 4 C 1.38665 * 119.96151 * 179.97438 * 3 2 1 5 5 O 1.35922 * 120.06368 * 180.02562 * 4 3 2 6 6 C 1.38858 * 119.87979 * 0.27602 * 4 3 2 7 7 Cl 1.73591 * 120.04068 * 179.70296 * 6 4 3 8 8 C 1.38216 * 119.91926 * 359.42949 * 6 4 3 9 9 C 1.50695 * 119.97970 * 180.27536 * 8 6 4 10 10 C 1.38228 * 119.96099 * 179.97438 * 2 1 3 11 11 C 1.50705 * 119.94195 * 359.97438 * 10 2 1 12 12 C 1.50696 * 115.54888 * 278.29120 * 11 10 2 13 13 H 1.08001 * 120.00077 * 144.66118 * 12 11 10 14 14 C 1.37872 * 120.00281 * 324.65790 * 12 11 10 15 15 N 1.31517 * 120.00043 * 4.90106 * 14 12 11 16 16 Si 1.86799 * 120.00439 * 184.90352 * 14 12 11 17 17 H 1.48508 * 109.47183 * 89.99875 * 16 14 12 18 18 H 1.48497 * 109.47463 * 209.99941 * 16 14 12 19 19 H 1.48503 * 109.47006 * 330.00011 * 16 14 12 20 20 C 1.52995 * 117.49951 * 132.58073 * 11 10 2 21 21 C 1.52995 * 117.49550 * 63.95679 * 11 10 2 22 22 H 1.09002 * 109.46837 * 85.93981 * 1 2 3 23 23 H 1.08993 * 109.47435 * 205.94017 * 1 2 3 24 24 H 1.08998 * 109.47287 * 325.94382 * 1 2 3 25 25 H 1.08004 * 120.02035 * 359.97438 * 3 2 1 26 26 H 0.96705 * 114.00214 * 89.99998 * 5 4 3 27 27 H 1.09009 * 109.47308 * 273.46912 * 9 8 6 28 28 H 1.08997 * 109.47266 * 33.46691 * 9 8 6 29 29 H 1.09000 * 109.47588 * 153.47114 * 9 8 6 30 30 H 0.97004 * 120.00305 * 184.98961 * 15 14 12 31 31 H 1.09000 * 117.50137 * 0.02562 * 20 11 10 32 32 H 1.09002 * 117.50181 * 145.02002 * 20 11 10 33 33 H 1.09003 * 117.49914 * 214.97514 * 21 11 10 34 34 H 1.09001 * 117.50195 * 0.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1972 0.0000 4 6 3.5838 1.1971 0.0005 5 8 4.2648 2.3735 0.0011 6 6 4.2756 -0.0069 -0.0047 7 17 6.0114 -0.0118 -0.0119 8 6 3.5803 -1.2014 0.0014 9 6 4.3296 -2.5088 0.0020 10 6 2.1973 -1.1976 0.0005 11 6 1.4416 -2.5014 0.0017 12 6 0.9466 -2.9645 1.3476 13 1 0.0017 -3.4816 1.4268 14 6 1.6998 -2.7281 2.4779 15 7 2.8020 -2.0153 2.3964 16 14 1.1550 -3.4204 4.1252 17 1 1.7463 -4.7694 4.3152 18 1 1.6120 -2.5216 5.2154 19 1 -0.3263 -3.5206 4.1544 20 6 1.8814 -3.5738 -0.9970 21 6 0.5714 -2.8146 -1.2171 22 1 -0.3633 0.0728 -1.0251 23 1 -0.3634 -0.9241 0.4495 24 1 -0.3634 0.8514 0.5755 25 1 1.6569 2.1324 -0.0004 26 1 4.4615 2.7137 0.8846 27 1 4.5601 -2.7961 -1.0240 28 1 5.2564 -2.3962 0.5646 29 1 3.7145 -3.2801 0.4657 30 1 3.3700 -1.9094 3.1756 31 1 2.7176 -3.3364 -1.6547 32 1 1.8129 -4.6146 -0.6807 33 1 -0.3590 -3.3560 -1.0455 34 1 0.5458 -2.0778 -2.0200 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260461126.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:02 Heat of formation + Delta-G solvation = -6.913386 kcal Electronic energy + Delta-G solvation = -18866.467602 eV Core-core repulsion = 15983.933022 eV Total energy + Delta-G solvation = -2882.534580 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.45569 -37.31703 -35.78395 -34.94149 -32.53055 -32.18319 -29.39599 -26.62297 -25.91498 -25.49391 -21.86581 -21.18832 -19.94154 -19.31937 -17.20319 -16.83974 -15.48351 -14.98628 -14.68144 -14.42408 -13.71669 -13.06566 -12.90832 -12.58791 -12.45913 -12.27656 -11.80853 -11.64602 -11.47907 -11.22198 -11.03075 -10.79388 -10.58513 -10.52403 -10.41896 -10.31116 -10.08169 -9.74953 -9.46265 -9.10272 -8.87096 -8.36058 -7.60131 -7.37613 -5.99019 -4.20584 2.09427 2.24283 2.97228 3.21297 3.30436 3.31551 4.28665 4.41827 4.87845 4.89970 5.40512 5.64546 5.73945 5.98231 6.08678 6.20865 6.27051 6.33165 6.40949 6.48124 6.52034 6.61877 6.66240 6.68502 6.78600 6.87763 7.04239 7.12900 7.22082 7.36006 7.45919 7.65422 7.76793 7.81122 8.20558 8.23946 8.76086 9.39046 10.86572 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018055 B = 0.008997 C = 0.008308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.419092 B = 3111.392608 C = 3369.457256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.069 4.069 3 C -0.153 4.153 4 C 0.083 3.917 5 O -0.496 6.496 6 C -0.074 4.074 7 Cl -0.092 7.092 8 C 0.013 3.987 9 C -0.099 4.099 10 C 0.042 3.958 11 C 0.083 3.917 12 C -0.490 4.490 13 H 0.064 0.936 14 C 0.075 3.925 15 N -0.862 5.862 16 Si 0.891 3.109 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.207 4.207 21 C -0.203 4.203 22 H 0.054 0.946 23 H 0.090 0.910 24 H 0.049 0.951 25 H 0.117 0.883 26 H 0.377 0.623 27 H 0.044 0.956 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.263 0.737 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.907 3.327 -3.152 4.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.069 4.069 3 C -0.172 4.172 4 C 0.038 3.962 5 O -0.305 6.305 6 C -0.101 4.101 7 Cl -0.064 7.064 8 C 0.012 3.988 9 C -0.155 4.155 10 C 0.041 3.959 11 C 0.083 3.917 12 C -0.527 4.527 13 H 0.082 0.918 14 C -0.130 4.130 15 N -0.497 5.497 16 Si 0.719 3.281 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.245 4.245 21 C -0.240 4.240 22 H 0.073 0.927 23 H 0.108 0.892 24 H 0.068 0.932 25 H 0.135 0.865 26 H 0.231 0.769 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.158 3.400 -3.617 5.097 hybrid contribution 0.117 -0.175 1.600 1.614 sum 1.274 3.226 -2.016 4.012 Atomic orbital electron populations 1.20755 0.91591 1.03480 1.00623 1.19460 0.95973 0.91751 0.99738 1.20840 0.92135 0.97937 1.06293 1.17853 0.89534 0.83516 1.05286 1.84804 1.76535 1.36418 1.32735 1.21016 0.82778 0.94442 1.11844 1.98267 1.11943 1.98857 1.97287 1.19074 0.93020 0.92777 0.93954 1.20811 0.99648 0.95799 0.99242 1.18815 0.91044 0.93556 0.92495 1.17666 0.95292 0.88921 0.89838 1.20448 1.06269 1.37229 0.88754 0.91758 1.24985 0.95353 0.93869 0.98758 1.70027 1.13015 1.36454 1.30170 0.86598 0.79041 0.78913 0.83573 1.20593 1.21248 1.19868 1.23245 0.96420 0.98589 1.06216 1.22968 0.94734 1.04071 1.02239 0.92726 0.89171 0.93201 0.86505 0.76861 0.93743 0.92844 0.88535 0.92636 0.91098 0.90112 0.90297 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.99 9.02 36.00 0.32 -1.67 16 2 C -0.07 -1.44 5.87 -104.64 -0.61 -2.05 16 3 C -0.15 -3.02 9.66 -39.44 -0.38 -3.40 16 4 C 0.08 1.65 6.70 -39.19 -0.26 1.39 16 5 O -0.50 -8.64 12.96 -19.50 -0.25 -8.89 16 6 C -0.07 -1.54 6.33 -39.36 -0.25 -1.79 16 7 Cl -0.09 -1.72 26.91 -51.86 -1.40 -3.12 16 8 C 0.01 0.28 4.28 -104.61 -0.45 -0.17 16 9 C -0.10 -2.06 7.11 36.00 0.26 -1.81 16 10 C 0.04 0.93 3.51 -104.60 -0.37 0.56 16 11 C 0.08 1.86 0.23 -156.82 -0.04 1.82 16 12 C -0.49 -12.00 8.21 -34.44 -0.28 -12.28 16 13 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 14 C 0.08 1.86 5.40 -17.82 -0.10 1.76 16 15 N -0.86 -21.68 8.61 55.43 0.48 -21.21 16 16 Si 0.89 19.74 29.54 -169.99 -5.02 14.72 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 C -0.21 -4.25 7.86 -26.73 -0.21 -4.46 16 21 C -0.20 -4.03 8.80 -26.73 -0.24 -4.26 16 22 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 23 H 0.09 1.82 5.94 -51.93 -0.31 1.51 16 24 H 0.05 0.83 8.11 -51.93 -0.42 0.41 16 25 H 0.12 2.02 8.06 -52.48 -0.42 1.59 16 26 H 0.38 5.03 9.06 45.56 0.41 5.44 16 27 H 0.04 0.84 7.33 -51.92 -0.38 0.46 16 28 H 0.05 1.09 7.05 -51.93 -0.37 0.73 16 29 H 0.10 2.20 5.39 -51.93 -0.28 1.92 16 30 H 0.26 6.57 8.32 -40.82 -0.34 6.23 16 31 H 0.07 1.40 6.53 -51.93 -0.34 1.06 16 32 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 33 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 288.48 15.07 4.35 4.35 Total: -1.00 -26.03 288.48 -7.79 -33.82 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -3.34 Total: 6.67 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -2.60 Total: -26.33 kcal Atomic # 7 Polarization: -21.68 SS G_CDS: 0.48 Total: -21.21 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.25 Total: -8.89 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -1.40 Total: -3.12 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.03 -7.79 -33.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260461126.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.902 kcal (2) G-P(sol) polarization free energy of solvation -26.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds