Wall clock time and date at job start Mon Mar 30 2020 06:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38192 * 119.96399 * 2 1 4 4 C 1.38665 * 119.96151 * 179.97438 * 3 2 1 5 5 O 1.35922 * 120.06368 * 180.02562 * 4 3 2 6 6 C 1.38858 * 119.87979 * 0.27602 * 4 3 2 7 7 Cl 1.73591 * 120.04068 * 179.70296 * 6 4 3 8 8 C 1.38216 * 119.91926 * 359.42949 * 6 4 3 9 9 C 1.50695 * 119.97970 * 180.27536 * 8 6 4 10 10 C 1.38228 * 119.96099 * 179.97438 * 2 1 3 11 11 C 1.50705 * 119.94195 * 359.97438 * 10 2 1 12 12 C 1.50696 * 115.54888 * 278.29120 * 11 10 2 13 13 H 1.08001 * 120.00077 * 144.66118 * 12 11 10 14 14 C 1.37872 * 120.00281 * 324.65790 * 12 11 10 15 15 N 1.31517 * 120.00043 * 4.90106 * 14 12 11 16 16 Si 1.86799 * 120.00439 * 184.90352 * 14 12 11 17 17 H 1.48508 * 109.47183 * 89.99875 * 16 14 12 18 18 H 1.48497 * 109.47463 * 209.99941 * 16 14 12 19 19 H 1.48503 * 109.47006 * 330.00011 * 16 14 12 20 20 C 1.52995 * 117.49951 * 132.58073 * 11 10 2 21 21 C 1.52995 * 117.49550 * 63.95679 * 11 10 2 22 22 H 1.09002 * 109.46837 * 85.93981 * 1 2 3 23 23 H 1.08993 * 109.47435 * 205.94017 * 1 2 3 24 24 H 1.08998 * 109.47287 * 325.94382 * 1 2 3 25 25 H 1.08004 * 120.02035 * 359.97438 * 3 2 1 26 26 H 0.96705 * 114.00214 * 89.99998 * 5 4 3 27 27 H 1.09009 * 109.47308 * 273.46912 * 9 8 6 28 28 H 1.08997 * 109.47266 * 33.46691 * 9 8 6 29 29 H 1.09000 * 109.47588 * 153.47114 * 9 8 6 30 30 H 0.97004 * 120.00305 * 184.98961 * 15 14 12 31 31 H 1.09000 * 117.50137 * 0.02562 * 20 11 10 32 32 H 1.09002 * 117.50181 * 145.02002 * 20 11 10 33 33 H 1.09003 * 117.49914 * 214.97514 * 21 11 10 34 34 H 1.09001 * 117.50195 * 0.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1972 0.0000 4 6 3.5838 1.1971 0.0005 5 8 4.2648 2.3735 0.0011 6 6 4.2756 -0.0069 -0.0047 7 17 6.0114 -0.0118 -0.0119 8 6 3.5803 -1.2014 0.0014 9 6 4.3296 -2.5088 0.0020 10 6 2.1973 -1.1976 0.0005 11 6 1.4416 -2.5014 0.0017 12 6 0.9466 -2.9645 1.3476 13 1 0.0017 -3.4816 1.4268 14 6 1.6998 -2.7281 2.4779 15 7 2.8020 -2.0153 2.3964 16 14 1.1550 -3.4204 4.1252 17 1 1.7463 -4.7694 4.3152 18 1 1.6120 -2.5216 5.2154 19 1 -0.3263 -3.5206 4.1544 20 6 1.8814 -3.5738 -0.9970 21 6 0.5714 -2.8146 -1.2171 22 1 -0.3633 0.0728 -1.0251 23 1 -0.3634 -0.9241 0.4495 24 1 -0.3634 0.8514 0.5755 25 1 1.6569 2.1324 -0.0004 26 1 4.4615 2.7137 0.8846 27 1 4.5601 -2.7961 -1.0240 28 1 5.2564 -2.3962 0.5646 29 1 3.7145 -3.2801 0.4657 30 1 3.3700 -1.9094 3.1756 31 1 2.7176 -3.3364 -1.6547 32 1 1.8129 -4.6146 -0.6807 33 1 -0.3590 -3.3560 -1.0455 34 1 0.5458 -2.0778 -2.0200 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260461126.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:02 Heat of formation + Delta-G solvation = -19.871120 kcal Electronic energy + Delta-G solvation = -18867.029492 eV Core-core repulsion = 15983.933022 eV Total energy + Delta-G solvation = -2883.096470 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.00318 -38.82954 -37.28320 -36.48897 -34.18157 -33.92247 -30.91852 -28.24354 -27.45666 -27.26907 -23.43265 -22.79875 -21.49240 -20.98404 -18.66234 -18.55669 -17.03429 -16.59564 -16.46006 -15.95880 -15.34460 -14.67602 -14.49376 -14.10415 -13.94192 -13.86176 -13.34164 -13.26282 -13.09228 -12.88139 -12.73650 -12.52906 -12.28827 -12.10909 -12.00419 -11.84009 -11.61005 -11.33100 -11.09588 -10.83119 -10.55017 -10.09785 -9.18705 -8.95382 -7.80470 -6.08264 0.53616 0.69340 1.42755 1.44435 1.49270 1.54260 2.46809 2.87750 3.10815 3.45058 3.69447 4.14211 4.15801 4.43387 4.56691 4.63681 4.74300 4.80342 4.87678 4.93038 4.96951 5.05335 5.09876 5.12483 5.22514 5.33610 5.49376 5.56293 5.61491 5.72716 5.76361 5.88174 6.20207 6.21191 6.43091 6.87637 6.91715 7.51105 8.98452 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018055 B = 0.008997 C = 0.008308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.419092 B = 3111.392608 C = 3369.457256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.081 4.081 3 C -0.157 4.157 4 C 0.085 3.915 5 O -0.496 6.496 6 C -0.090 4.090 7 Cl -0.079 7.079 8 C -0.004 4.004 9 C -0.088 4.088 10 C 0.020 3.980 11 C 0.064 3.936 12 C -0.500 4.500 13 H 0.055 0.945 14 C 0.041 3.959 15 N -0.872 5.872 16 Si 0.938 3.062 17 H -0.282 1.282 18 H -0.292 1.292 19 H -0.273 1.273 20 C -0.203 4.203 21 C -0.186 4.186 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.141 0.859 26 H 0.398 0.602 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.256 0.744 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.653 4.252 -3.591 5.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.082 4.082 3 C -0.176 4.176 4 C 0.040 3.960 5 O -0.307 6.307 6 C -0.117 4.117 7 Cl -0.051 7.051 8 C -0.005 4.005 9 C -0.144 4.144 10 C 0.019 3.981 11 C 0.063 3.937 12 C -0.537 4.537 13 H 0.073 0.927 14 C -0.162 4.162 15 N -0.507 5.507 16 Si 0.765 3.235 17 H -0.208 1.208 18 H -0.218 1.218 19 H -0.198 1.198 20 C -0.240 4.240 21 C -0.223 4.223 22 H 0.093 0.907 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.159 0.841 26 H 0.254 0.746 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.901 4.326 -4.052 5.996 hybrid contribution 0.221 -0.418 1.716 1.780 sum 1.122 3.908 -2.336 4.689 Atomic orbital electron populations 1.20723 0.90188 1.03055 1.01967 1.19807 0.97234 0.91810 0.99330 1.21103 0.92238 0.98551 1.05670 1.17960 0.89857 0.83932 1.04228 1.84746 1.76196 1.35327 1.34472 1.21182 0.83708 0.94644 1.12203 1.98261 1.10694 1.98846 1.97255 1.19208 0.93294 0.93303 0.94652 1.20668 0.98923 0.95113 0.99709 1.18913 0.91369 0.93925 0.93872 1.17650 0.96790 0.89675 0.89537 1.20610 1.05867 1.37033 0.90174 0.92731 1.25442 0.95636 0.94406 1.00682 1.70167 1.13418 1.37154 1.29991 0.85878 0.78528 0.78053 0.81026 1.20780 1.21836 1.19820 1.23185 0.97202 0.98007 1.05645 1.22968 0.94450 1.03650 1.01218 0.90716 0.91297 0.91535 0.84083 0.74556 0.92424 0.93080 0.90745 0.93421 0.90470 0.90538 0.89827 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.60 9.02 71.24 0.64 -2.96 16 2 C -0.08 -3.27 5.87 -19.88 -0.12 -3.39 16 3 C -0.16 -5.83 9.66 22.36 0.22 -5.61 16 4 C 0.09 3.24 6.70 22.52 0.15 3.39 16 5 O -0.50 -16.01 12.96 -92.68 -1.20 -17.21 16 6 C -0.09 -3.66 6.33 22.41 0.14 -3.52 16 7 Cl -0.08 -2.85 26.91 -2.72 -0.07 -2.93 16 8 C 0.00 -0.15 4.28 -19.86 -0.09 -0.24 16 9 C -0.09 -3.64 7.11 71.23 0.51 -3.14 16 10 C 0.02 0.88 3.51 -19.85 -0.07 0.81 16 11 C 0.06 2.82 0.23 -53.68 -0.01 2.80 16 12 C -0.50 -24.46 8.21 25.60 0.21 -24.25 16 13 H 0.05 2.70 7.82 -2.91 -0.02 2.68 16 14 C 0.04 2.04 5.40 84.65 0.46 2.49 16 15 N -0.87 -43.96 8.61 21.45 0.18 -43.78 16 16 Si 0.94 40.67 29.54 68.60 2.03 42.69 16 17 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 19 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 20 C -0.20 -8.18 7.86 30.59 0.24 -7.94 16 21 C -0.19 -7.13 8.80 30.59 0.27 -6.86 16 22 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 23 H 0.07 2.71 5.94 -2.39 -0.01 2.70 16 24 H 0.07 2.06 8.11 -2.39 -0.02 2.04 16 25 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 26 H 0.40 9.52 9.06 -74.05 -0.67 8.84 16 27 H 0.06 2.16 7.33 -2.38 -0.02 2.14 16 28 H 0.05 2.08 7.05 -2.39 -0.02 2.06 16 29 H 0.07 3.42 5.39 -2.39 -0.01 3.40 16 30 H 0.26 12.86 8.32 -92.71 -0.77 12.09 16 31 H 0.08 2.98 6.53 -2.39 -0.02 2.97 16 32 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 33 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 34 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -53.54 288.48 3.95 -49.60 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.46 Total: 20.04 kcal Atomic # 6 Polarization: -50.96 SS G_CDS: 2.55 Total: -48.41 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.18 Total: -43.78 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -1.20 Total: -17.21 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.69 kcal Atomic # 17 Polarization: -2.85 SS G_CDS: -0.07 Total: -2.93 kcal Total: -53.54 3.95 -49.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260461126.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.725 kcal (2) G-P(sol) polarization free energy of solvation -53.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds