Wall clock time and date at job start Mon Mar 30 2020 07:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35902 * 116.99734 * 2 1 4 4 C 1.38736 * 120.04717 * 0.02562 * 3 2 1 5 5 C 1.38235 * 119.92711 * 180.02562 * 4 3 2 6 6 Cl 1.73603 * 119.98257 * 179.97438 * 5 4 3 7 7 C 1.38410 * 120.03381 * 359.97438 * 5 4 3 8 8 C 1.50700 * 119.95071 * 180.02562 * 7 5 4 9 9 C 1.38220 * 120.09652 * 0.02944 * 7 5 4 10 10 C 1.50696 * 119.96755 * 179.97438 * 9 7 5 11 11 C 1.50703 * 115.54780 * 66.26313 * 10 9 7 12 12 H 1.08007 * 119.99524 * 219.66020 * 11 10 9 13 13 C 1.37872 * 120.00113 * 39.65268 * 11 10 9 14 14 N 1.31515 * 120.00253 * 8.29141 * 13 11 10 15 15 Si 1.86799 * 119.99885 * 188.55912 * 13 11 10 16 16 H 1.48495 * 109.47084 * 90.00609 * 15 13 11 17 17 H 1.48504 * 109.47042 * 210.00444 * 15 13 11 18 18 H 1.48497 * 109.47583 * 330.00346 * 15 13 11 19 19 C 1.52997 * 117.52174 * 211.96073 * 10 9 7 20 20 C 1.52997 * 117.50202 * 280.59474 * 10 9 7 21 21 C 1.38179 * 120.06600 * 0.24597 * 9 7 5 22 22 H 1.09011 * 109.47007 * 299.99477 * 1 2 3 23 23 H 1.08993 * 109.47740 * 59.99718 * 1 2 3 24 24 H 1.09003 * 109.46743 * 180.02562 * 1 2 3 25 25 H 1.07996 * 120.03422 * 0.04960 * 4 3 2 26 26 H 1.09005 * 109.46876 * 270.01977 * 8 7 5 27 27 H 1.08996 * 109.47395 * 30.02026 * 8 7 5 28 28 H 1.09002 * 109.46894 * 150.02296 * 8 7 5 29 29 H 0.96993 * 120.00349 * 184.97063 * 14 13 11 30 30 H 1.08997 * 117.50389 * 214.97424 * 19 10 9 31 31 H 1.09005 * 117.49925 * 359.97438 * 19 10 9 32 32 H 1.09002 * 117.49520 * 359.96604 * 20 10 9 33 33 H 1.08995 * 117.50562 * 144.99828 * 20 10 9 34 34 H 1.08008 * 120.00849 * 179.70258 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2912 2.3751 0.0005 5 6 1.9213 3.6055 0.0000 6 17 0.9784 5.0631 0.0000 7 6 3.3036 3.6759 -0.0005 8 6 3.9886 5.0182 -0.0005 9 6 4.0567 2.5168 -0.0012 10 6 5.5615 2.5969 -0.0023 11 6 6.1824 3.1779 1.2419 12 1 7.0309 3.8416 1.1626 13 6 5.6673 2.8625 2.4812 14 7 4.7439 1.9327 2.5924 15 14 6.2757 3.7611 4.0017 16 1 5.4367 4.9640 4.2346 17 1 6.1860 2.8597 5.1785 18 1 7.6879 4.1739 3.8010 19 6 6.3281 1.4849 -0.7212 20 6 6.2528 2.8836 -1.3368 21 6 3.4311 1.2848 -0.0064 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 0.2127 2.3200 0.0018 26 1 4.1530 5.3422 -1.0283 27 1 3.3614 5.7462 0.5140 28 1 4.9469 4.9371 0.5126 29 1 4.3298 1.7608 3.4525 30 1 7.2815 1.1736 -0.2943 31 1 5.7440 0.6948 -1.1931 32 1 5.6190 3.0138 -2.2140 33 1 7.1566 3.4924 -1.3150 34 1 4.0205 0.3797 -0.0117 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260467154.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:49 Heat of formation + Delta-G solvation = -13.846950 kcal Electronic energy + Delta-G solvation = -18485.313742 eV Core-core repulsion = 15602.478500 eV Total energy + Delta-G solvation = -2882.835242 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.14107 -39.31612 -37.81472 -36.55297 -34.11790 -32.77646 -31.29481 -28.59188 -27.65710 -26.63643 -24.10227 -23.00522 -22.10917 -20.91918 -19.20485 -17.76874 -17.20107 -16.62197 -16.49619 -16.06664 -15.66741 -15.52662 -14.95962 -14.77401 -14.49860 -13.75489 -13.22799 -13.15894 -13.01109 -12.89161 -12.66058 -12.62115 -12.42395 -12.35531 -12.08761 -11.96515 -11.63225 -11.43427 -11.25330 -11.01887 -10.61430 -10.14346 -9.36038 -8.77330 -8.00863 -6.12259 0.48253 0.65681 1.23147 1.42832 1.46783 1.52747 2.44546 2.48766 2.92190 3.09192 3.69167 3.94756 4.16935 4.25004 4.39295 4.42249 4.47341 4.53697 4.64278 4.71653 4.75325 4.93218 4.98596 5.01363 5.03676 5.16988 5.27888 5.38007 5.56135 5.57170 5.62039 5.75891 6.03535 6.07544 6.39808 6.57749 6.85573 7.47712 8.97093 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.015612 B = 0.008662 C = 0.007789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.025672 B = 3231.645946 C = 3593.923495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.119 3.881 4 C -0.219 4.219 5 C -0.012 4.012 6 Cl -0.070 7.070 7 C -0.117 4.117 8 C -0.110 4.110 9 C 0.066 3.934 10 C 0.056 3.944 11 C -0.496 4.496 12 H 0.061 0.939 13 C 0.037 3.963 14 N -0.883 5.883 15 Si 0.934 3.066 16 H -0.277 1.277 17 H -0.291 1.291 18 H -0.267 1.267 19 C -0.202 4.202 20 C -0.176 4.176 21 C -0.127 4.127 22 H 0.056 0.944 23 H 0.066 0.934 24 H 0.122 0.878 25 H 0.150 0.850 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.256 0.744 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.034 1.134 -5.646 9.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.074 3.926 4 C -0.239 4.239 5 C -0.039 4.039 6 Cl -0.041 7.041 7 C -0.118 4.118 8 C -0.166 4.166 9 C 0.065 3.935 10 C 0.056 3.944 11 C -0.533 4.533 12 H 0.079 0.921 13 C -0.165 4.165 14 N -0.519 5.519 15 Si 0.761 3.239 16 H -0.203 1.203 17 H -0.217 1.217 18 H -0.191 1.191 19 C -0.240 4.240 20 C -0.213 4.213 21 C -0.145 4.145 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.140 0.860 25 H 0.168 0.832 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.116 0.931 -5.493 9.844 hybrid contribution 0.009 0.340 1.156 1.205 sum -8.107 1.270 -4.336 9.281 Atomic orbital electron populations 1.23309 0.76798 1.05434 1.01933 1.86044 1.23287 1.26428 1.89176 1.18747 0.91795 0.84205 0.97835 1.20885 1.00526 0.90063 1.12394 1.20470 0.90945 0.87074 1.05401 1.98286 1.72146 1.36632 1.97013 1.19565 0.91032 0.97048 1.04149 1.20817 1.01848 0.91928 1.02036 1.18769 0.94602 0.90266 0.89870 1.17745 0.86751 0.98618 0.91285 1.20565 1.15352 1.28121 0.89263 0.92062 1.25499 0.95613 0.94633 1.00805 1.70150 1.27054 1.29602 1.25072 0.85908 0.79177 0.78736 0.80103 1.20322 1.21741 1.19096 1.23025 1.02643 0.91816 1.06538 1.22923 1.02686 0.98864 0.96814 1.20144 0.91066 0.98217 1.05117 0.92574 0.91587 0.85982 0.83229 0.91154 0.92282 0.89958 0.93420 0.90716 0.90723 0.89695 0.89298 0.87499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.81 113.37 1.11 1.57 16 2 O -0.33 -11.90 10.50 -92.45 -0.97 -12.87 16 3 C 0.12 4.79 6.69 22.50 0.15 4.94 16 4 C -0.22 -8.01 8.82 22.39 0.20 -7.81 16 5 C -0.01 -0.47 6.31 22.31 0.14 -0.33 16 6 Cl -0.07 -2.24 27.29 -2.72 -0.07 -2.32 16 7 C -0.12 -4.99 5.86 -19.83 -0.12 -5.11 16 8 C -0.11 -4.31 9.19 71.24 0.65 -3.66 16 9 C 0.07 3.02 3.52 -19.88 -0.07 2.95 16 10 C 0.06 2.63 1.13 -53.68 -0.06 2.57 16 11 C -0.50 -25.25 6.87 25.60 0.18 -25.07 16 12 H 0.06 3.09 7.83 -2.91 -0.02 3.07 16 13 C 0.04 1.94 5.28 84.65 0.45 2.39 16 14 N -0.88 -48.36 11.33 21.45 0.24 -48.12 16 15 Si 0.93 42.01 29.55 68.60 2.03 44.04 16 16 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 17 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 19 C -0.20 -8.76 9.42 30.59 0.29 -8.47 16 20 C -0.18 -7.01 9.94 30.59 0.30 -6.71 16 21 C -0.13 -5.75 8.44 22.37 0.19 -5.56 16 22 H 0.06 1.27 7.66 -2.38 -0.02 1.25 16 23 H 0.07 1.34 7.66 -2.39 -0.02 1.32 16 24 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.15 4.46 6.30 -2.91 -0.02 4.44 16 26 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 27 H 0.06 2.16 6.90 -2.39 -0.02 2.14 16 28 H 0.08 3.58 5.31 -2.39 -0.01 3.57 16 29 H 0.26 13.83 8.32 -92.71 -0.77 13.06 16 30 H 0.07 3.27 8.14 -2.39 -0.02 3.26 16 31 H 0.07 3.09 7.16 -2.38 -0.02 3.07 16 32 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 33 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 34 H 0.11 5.08 7.05 -2.91 -0.02 5.06 16 Total: -1.00 -57.16 296.15 5.75 -51.41 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 1.11 Total: 16.15 kcal Atomic # 6 Polarization: -51.71 SS G_CDS: 3.41 Total: -48.30 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.24 Total: -48.12 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -0.97 Total: -12.87 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 17 Polarization: -2.24 SS G_CDS: -0.07 Total: -2.32 kcal Total: -57.16 5.75 -51.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260467154.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.566 kcal (2) G-P(sol) polarization free energy of solvation -57.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds