Wall clock time and date at job start Mon Mar 30 2020 07:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46902 * 2 1 4 4 C 1.50700 * 109.47266 * 239.99993 * 2 1 3 5 5 H 1.08000 * 120.00327 * 239.91924 * 4 2 1 6 6 C 1.37882 * 120.00090 * 59.91151 * 4 2 1 7 7 N 1.31516 * 119.99592 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00206 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47221 * 89.99944 * 8 6 4 10 10 H 1.48500 * 109.47416 * 210.00474 * 8 6 4 11 11 H 1.48506 * 109.47148 * 330.00312 * 8 6 4 12 12 C 1.50699 * 109.46996 * 119.99986 * 2 1 3 13 13 C 1.38376 * 120.11295 * 62.78987 * 12 2 1 14 14 C 1.37732 * 120.00058 * 180.02562 * 13 12 2 15 15 C 1.38884 * 120.79401 * 0.34054 * 14 13 12 16 16 C 1.39335 * 118.87163 * 359.51973 * 15 14 13 17 17 Cl 1.73601 * 119.89057 * 180.28647 * 16 15 14 18 18 C 1.38069 * 120.22137 * 0.28606 * 16 15 14 19 19 O 1.36406 * 111.31947 * 179.08393 * 15 14 13 20 20 C 1.43774 * 109.09523 * 18.73383 * 19 15 14 21 21 C 1.51649 * 132.16678 * 180.33076 * 14 13 12 22 22 H 1.08999 * 109.47153 * 299.99926 * 1 2 3 23 23 H 1.09000 * 109.47197 * 59.99996 * 1 2 3 24 24 H 1.09004 * 109.47184 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47083 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.47198 * 300.00004 * 3 2 1 27 27 H 1.08995 * 109.47639 * 60.00098 * 3 2 1 28 28 H 0.96997 * 119.99391 * 179.97438 * 7 6 4 29 29 H 1.08003 * 120.00311 * 0.04372 * 13 12 2 30 30 H 1.08004 * 119.83313 * 180.02562 * 18 16 15 31 31 H 1.09008 * 110.75001 * 214.09288 * 20 19 15 32 32 H 1.08999 * 110.75369 * 90.92808 * 20 19 15 33 33 H 1.09003 * 110.93570 * 46.46259 * 21 14 13 34 34 H 1.08991 * 110.97186 * 282.79384 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6543 -1.5877 -1.1314 6 6 1.6978 -0.2404 -2.4828 7 7 0.9406 0.8282 -2.6034 8 14 2.3199 -1.1214 -4.0080 9 1 1.3423 -2.1641 -4.4106 10 1 2.4832 -0.1428 -5.1129 11 1 3.6288 -1.7577 -3.7128 12 6 2.0323 -0.7104 1.2305 13 6 1.7476 -2.0508 1.4230 14 6 2.2074 -2.6977 2.5487 15 6 2.9522 -2.0189 3.5045 16 6 3.2373 -0.6701 3.3022 17 17 4.1724 0.2021 4.4762 18 6 2.7785 -0.0250 2.1709 19 8 3.2887 -2.8363 4.5434 20 6 3.1556 -4.2058 4.1265 21 6 2.0691 -4.1298 3.0278 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 3.1299 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 0.7056 1.1590 -3.4844 29 1 1.1652 -2.5899 0.6905 30 1 3.0036 1.0206 2.0202 31 1 2.8236 -4.8313 4.9553 32 1 4.0944 -4.5777 3.7161 33 1 2.2806 -4.8324 2.2217 34 1 1.0786 -4.3071 3.4465 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260475869.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:34 Heat of formation + Delta-G solvation = -22.329677 kcal Electronic energy + Delta-G solvation = -18157.037463 eV Core-core repulsion = 15273.834383 eV Total energy + Delta-G solvation = -2883.203081 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.75802 -37.95665 -36.19151 -34.64940 -32.27279 -31.35341 -29.07804 -28.22107 -25.82076 -25.21284 -23.07072 -22.20879 -21.34064 -18.96536 -17.16320 -16.30236 -16.26980 -15.82272 -15.16378 -14.38544 -14.03365 -13.39794 -13.18445 -12.98991 -12.80223 -12.60227 -12.02919 -11.69360 -11.53718 -11.31781 -11.24525 -11.06808 -10.91158 -10.76286 -10.57969 -10.49993 -10.28359 -10.05212 -9.64365 -9.49720 -8.88773 -8.40835 -8.25684 -7.47312 -6.04214 -4.14805 1.65414 1.80281 2.56028 3.25073 3.32927 3.36193 3.46697 4.11364 4.38490 4.60459 4.78619 5.06049 5.21787 5.26417 5.49440 5.72390 5.74092 5.83824 5.88839 6.00054 6.27064 6.55376 6.65284 6.71152 6.78336 6.90358 6.94604 7.09265 7.16162 7.31348 7.48832 7.56917 7.69377 7.99088 8.11531 8.35799 8.84954 9.50731 10.96735 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022505 B = 0.006350 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.869666 B = 4408.716802 C = 5064.561966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.100 3.900 3 C -0.136 4.136 4 C -0.503 4.503 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.891 3.109 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.036 4.036 13 C -0.058 4.058 14 C -0.167 4.167 15 C 0.080 3.920 16 C -0.049 4.049 17 Cl -0.085 7.085 18 C -0.094 4.094 19 O -0.302 6.302 20 C 0.052 3.948 21 C -0.106 4.106 22 H 0.011 0.989 23 H 0.088 0.912 24 H 0.028 0.972 25 H 0.030 0.970 26 H 0.088 0.912 27 H 0.014 0.986 28 H 0.261 0.739 29 H 0.131 0.869 30 H 0.142 0.858 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.900 -6.204 9.800 11.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.100 3.900 3 C -0.194 4.194 4 C -0.541 4.541 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.719 3.281 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.200 1.200 12 C -0.037 4.037 13 C -0.076 4.076 14 C -0.168 4.168 15 C 0.035 3.965 16 C -0.076 4.076 17 Cl -0.056 7.056 18 C -0.113 4.113 19 O -0.217 6.217 20 C -0.024 4.024 21 C -0.143 4.143 22 H 0.030 0.970 23 H 0.107 0.893 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.106 0.894 27 H 0.033 0.967 28 H 0.071 0.929 29 H 0.149 0.851 30 H 0.160 0.840 31 H 0.119 0.881 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.982 -5.962 9.986 11.798 hybrid contribution 0.429 -0.565 -0.836 1.096 sum 2.411 -6.527 9.150 11.495 Atomic orbital electron populations 1.21821 0.96714 0.99317 1.00631 1.17225 0.92644 0.92043 0.88134 1.21921 0.98652 0.98100 1.00689 1.21048 1.31393 1.12116 0.89507 0.92467 1.24896 0.94880 0.94921 0.98778 1.69805 1.36513 1.22667 1.23312 0.86599 0.79292 0.79446 0.82730 1.20705 1.21194 1.19955 1.20561 0.94177 0.92988 0.95956 1.20389 0.98171 0.94348 0.94683 1.20651 1.02965 0.95883 0.97314 1.19036 0.97786 0.90820 0.88872 1.20102 1.03791 0.89484 0.94216 1.98316 1.72295 1.76489 1.58525 1.21007 0.98104 1.00959 0.91211 1.86897 1.85429 1.16078 1.33283 1.23749 0.98720 0.82130 0.97774 1.21736 0.99998 0.94123 0.98439 0.97030 0.89289 0.95319 0.95084 0.89366 0.96746 0.92903 0.85067 0.84036 0.88092 0.90911 0.89167 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.09 37.16 0.30 -2.59 16 2 C 0.10 2.30 0.58 -156.82 -0.09 2.21 16 3 C -0.14 -3.09 6.91 37.16 0.26 -2.84 16 4 C -0.50 -12.76 7.63 -34.44 -0.26 -13.03 16 5 H 0.06 1.47 7.53 -52.49 -0.40 1.07 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -23.20 9.35 55.43 0.52 -22.68 16 8 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 C -0.04 -0.76 4.72 -104.57 -0.49 -1.25 16 13 C -0.06 -1.11 8.64 -39.72 -0.34 -1.45 16 14 C -0.17 -2.85 6.27 -104.10 -0.65 -3.50 16 15 C 0.08 1.43 6.83 -38.93 -0.27 1.16 16 16 C -0.05 -0.90 6.34 -39.24 -0.25 -1.15 16 17 Cl -0.08 -1.41 28.94 -51.86 -1.50 -2.91 16 18 C -0.09 -1.84 8.74 -39.64 -0.35 -2.19 16 19 O -0.30 -4.89 11.11 -21.04 -0.23 -5.12 16 20 C 0.05 0.61 8.00 38.05 0.30 0.91 16 21 C -0.11 -1.33 7.12 -26.52 -0.19 -1.52 16 22 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 23 H 0.09 2.21 6.06 -51.93 -0.31 1.89 16 24 H 0.03 0.62 7.57 -51.93 -0.39 0.22 16 25 H 0.03 0.68 7.65 -51.93 -0.40 0.29 16 26 H 0.09 2.20 6.08 -51.93 -0.32 1.88 16 27 H 0.01 0.28 7.39 -51.93 -0.38 -0.10 16 28 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 29 H 0.13 2.47 7.70 -52.48 -0.40 2.07 16 30 H 0.14 2.67 5.90 -52.48 -0.31 2.36 16 31 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 290.17 15.07 4.37 4.37 Total: -1.00 -26.81 290.17 -8.15 -34.96 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -4.16 Total: -0.27 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: -2.12 Total: -23.60 kcal Atomic # 7 Polarization: -23.20 SS G_CDS: 0.52 Total: -22.68 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.23 Total: -5.12 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -1.50 Total: -2.91 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -26.81 -8.15 -34.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260475869.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.630 kcal (2) G-P(sol) polarization free energy of solvation -26.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds