Wall clock time and date at job start Mon Mar 30 2020 07:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46902 * 2 1 4 4 C 1.50700 * 109.47266 * 239.99993 * 2 1 3 5 5 H 1.08000 * 120.00327 * 239.91924 * 4 2 1 6 6 C 1.37882 * 120.00090 * 59.91151 * 4 2 1 7 7 N 1.31516 * 119.99592 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00206 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47221 * 89.99944 * 8 6 4 10 10 H 1.48500 * 109.47416 * 210.00474 * 8 6 4 11 11 H 1.48506 * 109.47148 * 330.00312 * 8 6 4 12 12 C 1.50699 * 109.46996 * 119.99986 * 2 1 3 13 13 C 1.38376 * 120.11295 * 62.78987 * 12 2 1 14 14 C 1.37732 * 120.00058 * 180.02562 * 13 12 2 15 15 C 1.38884 * 120.79401 * 0.34054 * 14 13 12 16 16 C 1.39335 * 118.87163 * 359.51973 * 15 14 13 17 17 Cl 1.73601 * 119.89057 * 180.28647 * 16 15 14 18 18 C 1.38069 * 120.22137 * 0.28606 * 16 15 14 19 19 O 1.36406 * 111.31947 * 179.08393 * 15 14 13 20 20 C 1.43774 * 109.09523 * 18.73383 * 19 15 14 21 21 C 1.51649 * 132.16678 * 180.33076 * 14 13 12 22 22 H 1.08999 * 109.47153 * 299.99926 * 1 2 3 23 23 H 1.09000 * 109.47197 * 59.99996 * 1 2 3 24 24 H 1.09004 * 109.47184 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47083 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.47198 * 300.00004 * 3 2 1 27 27 H 1.08995 * 109.47639 * 60.00098 * 3 2 1 28 28 H 0.96997 * 119.99391 * 179.97438 * 7 6 4 29 29 H 1.08003 * 120.00311 * 0.04372 * 13 12 2 30 30 H 1.08004 * 119.83313 * 180.02562 * 18 16 15 31 31 H 1.09008 * 110.75001 * 214.09288 * 20 19 15 32 32 H 1.08999 * 110.75369 * 90.92808 * 20 19 15 33 33 H 1.09003 * 110.93570 * 46.46259 * 21 14 13 34 34 H 1.08991 * 110.97186 * 282.79384 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6543 -1.5877 -1.1314 6 6 1.6978 -0.2404 -2.4828 7 7 0.9406 0.8282 -2.6034 8 14 2.3199 -1.1214 -4.0080 9 1 1.3423 -2.1641 -4.4106 10 1 2.4832 -0.1428 -5.1129 11 1 3.6288 -1.7577 -3.7128 12 6 2.0323 -0.7104 1.2305 13 6 1.7476 -2.0508 1.4230 14 6 2.2074 -2.6977 2.5487 15 6 2.9522 -2.0189 3.5045 16 6 3.2373 -0.6701 3.3022 17 17 4.1724 0.2021 4.4762 18 6 2.7785 -0.0250 2.1709 19 8 3.2887 -2.8363 4.5434 20 6 3.1556 -4.2058 4.1265 21 6 2.0691 -4.1298 3.0278 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 3.1299 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 0.7056 1.1590 -3.4844 29 1 1.1652 -2.5899 0.6905 30 1 3.0036 1.0206 2.0202 31 1 2.8236 -4.8313 4.9553 32 1 4.0944 -4.5777 3.7161 33 1 2.2806 -4.8324 2.2217 34 1 1.0786 -4.3071 3.4465 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260475869.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:30 Heat of formation + Delta-G solvation = -34.918823 kcal Electronic energy + Delta-G solvation = -18157.583369 eV Core-core repulsion = 15273.834383 eV Total energy + Delta-G solvation = -2883.748987 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 3.71 seconds Orbital eigenvalues (eV) -42.01998 -39.43258 -37.58778 -36.28243 -33.59079 -33.07980 -30.37897 -29.68921 -27.57842 -27.16009 -24.26380 -23.68092 -22.67077 -20.61854 -18.46637 -18.04471 -17.53143 -17.04875 -16.91189 -15.99460 -15.48468 -14.90328 -14.76786 -14.31567 -14.07402 -13.88632 -13.61889 -13.33070 -13.04095 -12.89479 -12.70004 -12.67321 -12.46349 -12.34914 -12.19531 -12.12004 -11.87360 -11.58926 -11.34908 -11.22398 -10.71068 -10.35257 -9.63881 -8.89619 -7.98346 -6.14464 0.23196 0.37838 1.17644 1.43585 1.47149 1.54561 2.28386 2.46315 2.71798 3.24950 3.51179 3.71800 4.04657 4.20806 4.26208 4.37518 4.48085 4.59560 4.80447 4.86257 4.90636 4.93250 4.94587 5.08419 5.15820 5.22800 5.35066 5.41677 5.57360 5.63629 5.72512 5.76984 6.11360 6.17570 6.26371 6.45803 6.89631 7.52818 9.00271 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022505 B = 0.006350 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.869666 B = 4408.716802 C = 5064.561966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.094 3.906 3 C -0.127 4.127 4 C -0.513 4.513 5 H 0.048 0.952 6 C 0.026 3.974 7 N -0.903 5.903 8 Si 0.943 3.057 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.275 1.275 12 C -0.059 4.059 13 C -0.067 4.067 14 C -0.166 4.166 15 C 0.080 3.920 16 C -0.060 4.060 17 Cl -0.072 7.072 18 C -0.102 4.102 19 O -0.314 6.314 20 C 0.047 3.953 21 C -0.103 4.103 22 H 0.022 0.978 23 H 0.065 0.935 24 H 0.030 0.970 25 H 0.026 0.974 26 H 0.063 0.937 27 H 0.030 0.970 28 H 0.260 0.740 29 H 0.128 0.872 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.305 -8.066 11.027 13.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.094 3.906 3 C -0.184 4.184 4 C -0.551 4.551 5 H 0.066 0.934 6 C -0.173 4.173 7 N -0.542 5.542 8 Si 0.770 3.230 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.200 1.200 12 C -0.060 4.060 13 C -0.086 4.086 14 C -0.167 4.167 15 C 0.034 3.966 16 C -0.087 4.087 17 Cl -0.043 7.043 18 C -0.120 4.120 19 O -0.229 6.229 20 C -0.027 4.027 21 C -0.139 4.139 22 H 0.041 0.959 23 H 0.084 0.916 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.082 0.918 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.146 0.854 30 H 0.158 0.842 31 H 0.155 0.845 32 H 0.104 0.896 33 H 0.127 0.873 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.389 -7.835 11.222 13.893 hybrid contribution 0.335 -0.038 -1.112 1.162 sum 2.724 -7.873 10.110 13.101 Atomic orbital electron populations 1.21681 0.96813 0.99186 0.99911 1.17175 0.92669 0.92065 0.88683 1.21784 0.98279 0.98189 1.00192 1.21268 1.31115 1.11950 0.90736 0.93352 1.25488 0.95240 0.95578 1.00981 1.69927 1.37227 1.23496 1.23550 0.85785 0.78703 0.78502 0.79988 1.20238 1.21247 1.20033 1.20357 0.95940 0.93947 0.95723 1.20373 0.98703 0.93869 0.95614 1.21053 1.01383 0.98268 0.95972 1.19212 0.97277 0.90826 0.89297 1.20168 1.04036 0.90213 0.94317 1.98312 1.71873 1.76297 1.57802 1.20937 0.98426 1.00979 0.91657 1.86891 1.85145 1.17911 1.32951 1.24143 0.99295 0.80268 0.98998 1.21899 1.01426 0.91380 0.99232 0.95894 0.91650 0.95105 0.95447 0.91801 0.95111 0.93088 0.85401 0.84179 0.84455 0.89628 0.87267 0.87565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.09 71.98 0.58 -4.85 16 2 C 0.09 4.40 0.58 -53.68 -0.03 4.37 16 3 C -0.13 -5.87 6.91 71.98 0.50 -5.37 16 4 C -0.51 -26.33 7.63 25.60 0.20 -26.13 16 5 H 0.05 2.51 7.53 -2.91 -0.02 2.49 16 6 C 0.03 1.37 5.15 84.66 0.44 1.81 16 7 N -0.90 -48.18 9.35 21.45 0.20 -47.98 16 8 Si 0.94 41.78 29.54 68.60 2.03 43.81 16 9 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 10 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 12 C -0.06 -2.46 4.72 -19.83 -0.09 -2.55 16 13 C -0.07 -2.53 8.64 22.18 0.19 -2.34 16 14 C -0.17 -5.31 6.27 -19.53 -0.12 -5.43 16 15 C 0.08 2.68 6.83 22.69 0.16 2.84 16 16 C -0.06 -2.16 6.34 22.49 0.14 -2.02 16 17 Cl -0.07 -2.29 28.94 -2.72 -0.08 -2.37 16 18 C -0.10 -3.94 8.74 22.23 0.19 -3.74 16 19 O -0.31 -9.23 11.11 -98.21 -1.09 -10.32 16 20 C 0.05 0.91 8.00 72.56 0.58 1.49 16 21 C -0.10 -2.19 7.12 30.73 0.22 -1.97 16 22 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.06 3.30 6.06 -2.39 -0.01 3.29 16 24 H 0.03 1.34 7.57 -2.38 -0.02 1.32 16 25 H 0.03 1.22 7.65 -2.39 -0.02 1.21 16 26 H 0.06 3.25 6.08 -2.39 -0.01 3.24 16 27 H 0.03 1.26 7.39 -2.39 -0.02 1.25 16 28 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 29 H 0.13 4.78 7.70 -2.91 -0.02 4.76 16 30 H 0.14 5.31 5.90 -2.91 -0.02 5.29 16 31 H 0.14 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.11 1.92 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -57.17 290.17 5.11 -52.05 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 1.11 Total: 8.71 kcal Atomic # 6 Polarization: -46.85 SS G_CDS: 2.95 Total: -43.90 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.20 Total: -47.98 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -1.09 Total: -10.32 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Atomic # 17 Polarization: -2.29 SS G_CDS: -0.08 Total: -2.37 kcal Total: -57.17 5.11 -52.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260475869.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.136 kcal (2) G-P(sol) polarization free energy of solvation -57.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.71 seconds