Wall clock time and date at job start Mon Mar 30 2020 06:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38198 * 119.96432 * 2 1 4 4 C 1.38661 * 119.95812 * 179.97438 * 3 2 1 5 5 O 1.35928 * 120.05862 * 179.97438 * 4 3 2 6 6 C 1.38860 * 119.88046 * 0.02562 * 4 3 2 7 7 Cl 1.73603 * 120.03485 * 180.02562 * 6 4 3 8 8 C 1.38208 * 119.92335 * 359.75013 * 6 4 3 9 9 C 1.38233 * 119.96159 * 180.02562 * 2 1 3 10 10 C 1.50702 * 119.93767 * 359.97438 * 9 2 1 11 11 H 1.08997 * 109.47292 * 354.50284 * 10 9 2 12 12 C 1.50707 * 109.46769 * 114.49791 * 10 9 2 13 13 H 1.07994 * 120.00065 * 0.02562 * 12 10 9 14 14 C 1.37881 * 119.99660 * 179.97438 * 12 10 9 15 15 N 1.31512 * 120.00091 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99610 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47162 * 359.97438 * 16 14 12 18 18 H 1.48506 * 109.46714 * 239.99946 * 16 14 12 19 19 H 1.48498 * 109.47050 * 120.00313 * 16 14 12 20 20 C 1.52999 * 109.46981 * 234.49578 * 10 9 2 21 21 C 1.52999 * 117.49503 * 128.75051 * 20 10 9 22 22 C 1.53001 * 117.49639 * 60.09531 * 20 10 9 23 23 H 1.08995 * 109.47002 * 264.34582 * 1 2 3 24 24 H 1.09001 * 109.46481 * 24.34394 * 1 2 3 25 25 H 1.08993 * 109.47027 * 144.34052 * 1 2 3 26 26 H 1.08005 * 120.02010 * 0.02562 * 3 2 1 27 27 H 0.96694 * 113.99832 * 90.00150 * 5 4 3 28 28 H 1.07999 * 119.98169 * 180.25068 * 8 6 4 29 29 H 0.97002 * 119.99751 * 0.02562 * 15 14 12 30 30 H 1.08993 * 115.55140 * 274.41579 * 20 10 9 31 31 H 1.09003 * 117.50197 * 0.02562 * 21 20 10 32 32 H 1.08996 * 117.50213 * 145.02028 * 21 20 10 33 33 H 1.09001 * 117.49389 * 214.97806 * 22 20 10 34 34 H 1.08998 * 117.49873 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1973 0.0000 4 6 3.5839 1.1971 0.0005 5 8 4.2648 2.3735 0.0000 6 6 4.2755 -0.0070 0.0005 7 17 6.0115 -0.0118 0.0019 8 6 3.5803 -1.2014 0.0052 9 6 2.1974 -1.1976 -0.0005 10 6 1.4416 -2.5014 -0.0005 11 1 0.3744 -2.3028 0.0984 12 6 1.6989 -3.2311 -1.2938 13 1 2.3454 -2.7947 -2.0407 14 6 1.1098 -4.4565 -1.5229 15 7 0.3237 -4.9887 -0.6127 16 14 1.4293 -5.3613 -3.1256 17 1 2.3425 -4.5556 -3.9753 18 1 0.1446 -5.5707 -3.8404 19 1 2.0542 -6.6768 -2.8353 20 6 1.9110 -3.3630 1.1734 21 6 0.8385 -3.9392 2.1000 22 6 1.7328 -2.7944 2.5826 23 1 -0.3633 -0.1012 1.0226 24 1 -0.3632 0.9363 -0.4236 25 1 -0.3633 -0.8349 -0.5991 26 1 1.6570 2.1325 0.0004 27 1 4.4615 2.7144 0.8832 28 1 4.1173 -2.1385 0.0093 29 1 0.1581 -4.5189 0.2197 30 1 2.7940 -3.9735 0.9849 31 1 -0.2015 -3.7048 1.8731 32 1 1.0162 -4.9285 2.5215 33 1 2.4986 -3.0312 3.3213 34 1 1.2815 -1.8064 2.6733 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260476137.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:33 Heat of formation + Delta-G solvation = -30.954339 kcal Electronic energy + Delta-G solvation = -18207.804383 eV Core-core repulsion = 15324.227309 eV Total energy + Delta-G solvation = -2883.577074 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.11385 -39.13506 -37.50585 -37.38833 -34.68986 -33.32609 -32.15778 -28.70777 -27.39045 -25.26594 -23.64738 -23.28057 -22.17003 -21.00395 -19.07431 -18.84507 -17.40723 -16.98492 -16.38391 -15.97773 -15.62534 -15.22316 -14.82774 -14.47776 -14.37999 -14.31547 -13.66363 -13.50215 -13.33632 -12.74900 -12.69259 -12.41740 -12.26573 -12.04982 -11.98153 -11.90231 -11.75536 -11.43936 -11.32931 -10.83596 -10.50449 -10.27408 -9.68487 -9.19905 -8.40389 -6.21727 0.15867 0.32161 1.15409 1.54382 1.60684 1.77593 2.53564 2.65331 3.08619 3.17533 3.28040 3.84645 3.97783 4.05384 4.20497 4.25948 4.30305 4.47559 4.58197 4.68688 4.74773 4.79302 4.85266 4.99236 5.07746 5.13838 5.22248 5.27881 5.30951 5.38741 5.50640 5.82605 5.87959 6.17687 6.35242 6.78208 6.84209 7.57073 8.98047 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018226 B = 0.006997 C = 0.006417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.930487 B = 4000.879875 C = 4362.070331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.083 4.083 3 C -0.128 4.128 4 C 0.100 3.900 5 O -0.492 6.492 6 C -0.075 4.075 7 Cl -0.067 7.067 8 C -0.093 4.093 9 C -0.042 4.042 10 C 0.094 3.906 11 H 0.026 0.974 12 C -0.604 4.604 13 H 0.033 0.967 14 C -0.015 4.015 15 N -0.940 5.940 16 Si 1.103 2.897 17 H -0.282 1.282 18 H -0.281 1.281 19 H -0.283 1.283 20 C -0.129 4.129 21 C -0.171 4.171 22 C -0.171 4.171 23 H 0.080 0.920 24 H 0.089 0.911 25 H 0.053 0.947 26 H 0.161 0.839 27 H 0.406 0.594 28 H 0.116 0.884 29 H 0.285 0.715 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.904 11.731 5.409 13.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.083 4.083 3 C -0.146 4.146 4 C 0.054 3.946 5 O -0.304 6.304 6 C -0.102 4.102 7 Cl -0.038 7.038 8 C -0.112 4.112 9 C -0.043 4.043 10 C 0.076 3.924 11 H 0.043 0.957 12 C -0.642 4.642 13 H 0.052 0.948 14 C -0.217 4.217 15 N -0.578 5.578 16 Si 0.928 3.072 17 H -0.208 1.208 18 H -0.207 1.207 19 H -0.209 1.209 20 C -0.148 4.148 21 C -0.209 4.209 22 C -0.208 4.208 23 H 0.098 0.902 24 H 0.107 0.893 25 H 0.072 0.928 26 H 0.179 0.821 27 H 0.265 0.735 28 H 0.134 0.866 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.668 10.313 3.986 11.649 hybrid contribution 0.701 0.853 1.192 1.625 sum 4.369 11.166 5.178 13.060 Atomic orbital electron populations 1.20816 0.89863 1.03170 1.02826 1.20012 0.97430 0.91803 0.99068 1.21356 0.92167 0.98790 1.02331 1.18020 0.89867 0.84032 1.02642 1.84801 1.75900 1.34593 1.35084 1.21422 0.84756 0.94783 1.09218 1.98319 1.09498 1.98931 1.97081 1.20709 0.94075 0.96192 1.00245 1.20016 0.92903 0.95728 0.95626 1.17571 0.93894 0.88286 0.92696 0.95664 1.22147 1.32758 1.06712 1.02539 0.94812 1.26721 0.93383 0.96163 1.05425 1.70753 1.35332 1.42100 1.09665 0.83082 0.76467 0.75134 0.72507 1.20773 1.20663 1.20919 1.22398 0.99381 1.02030 0.90989 1.22742 0.95894 0.97616 1.04608 1.23027 1.02735 0.97572 0.97457 0.90185 0.89269 0.92823 0.82126 0.73499 0.86603 0.90078 0.91507 0.90219 0.89750 0.88310 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.31 9.14 71.24 0.65 -2.66 16 2 C -0.08 -2.82 5.88 -19.88 -0.12 -2.94 16 3 C -0.13 -3.68 9.62 22.36 0.22 -3.47 16 4 C 0.10 2.98 6.70 22.52 0.15 3.13 16 5 O -0.49 -11.97 12.97 -92.74 -1.20 -13.17 16 6 C -0.07 -2.53 6.33 22.41 0.14 -2.39 16 7 Cl -0.07 -2.04 28.51 -2.72 -0.08 -2.11 16 8 C -0.09 -3.66 8.75 22.28 0.19 -3.46 16 9 C -0.04 -1.71 4.38 -19.85 -0.09 -1.80 16 10 C 0.09 4.37 1.59 -12.28 -0.02 4.35 16 11 H 0.03 1.24 5.33 -2.39 -0.01 1.23 16 12 C -0.60 -32.67 8.30 25.60 0.21 -32.46 16 13 H 0.03 1.90 7.73 -2.91 -0.02 1.87 16 14 C -0.02 -0.84 5.30 84.66 0.45 -0.39 16 15 N -0.94 -53.88 13.38 21.45 0.29 -53.60 16 16 Si 1.10 50.30 29.90 68.60 2.05 52.35 16 17 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 C -0.13 -5.67 3.62 -10.79 -0.04 -5.71 16 21 C -0.17 -6.90 8.14 30.62 0.25 -6.65 16 22 C -0.17 -6.02 9.87 30.62 0.30 -5.72 16 23 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.09 2.10 8.05 -2.39 -0.02 2.08 16 25 H 0.05 1.94 6.53 -2.39 -0.02 1.92 16 26 H 0.16 3.53 8.06 -2.91 -0.02 3.50 16 27 H 0.41 5.83 9.06 -74.06 -0.67 5.16 16 28 H 0.12 4.86 7.91 -2.91 -0.02 4.83 16 29 H 0.29 15.61 3.55 -92.71 -0.33 15.28 16 30 H 0.07 3.22 8.11 -2.39 -0.02 3.20 16 31 H 0.08 3.31 7.42 -2.39 -0.02 3.30 16 32 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 33 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -62.32 297.99 4.25 -58.07 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.89 Total: 18.62 kcal Atomic # 6 Polarization: -62.47 SS G_CDS: 2.30 Total: -60.17 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 0.29 Total: -53.60 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -1.20 Total: -13.17 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 2.05 Total: 52.35 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -0.08 Total: -2.11 kcal Total: -62.32 4.25 -58.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260476137.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.118 kcal (2) G-P(sol) polarization free energy of solvation -62.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds