Wall clock time and date at job start Mon Mar 30 2020 07:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38194 * 119.96102 * 2 1 4 4 C 1.38660 * 119.95980 * 180.02562 * 3 2 1 5 5 O 1.35919 * 120.06493 * 179.97438 * 4 3 2 6 6 C 1.38857 * 119.87884 * 0.02562 * 4 3 2 7 7 Cl 1.73601 * 120.04185 * 179.97438 * 6 4 3 8 8 C 1.38215 * 119.92486 * 0.02562 * 6 4 3 9 9 C 1.50695 * 119.98216 * 179.72363 * 8 6 4 10 10 H 1.09005 * 109.47258 * 0.02562 * 9 8 6 11 11 C 1.50703 * 109.47178 * 119.99883 * 9 8 6 12 12 H 1.07996 * 119.99805 * 0.02562 * 11 9 8 13 13 C 1.37880 * 120.00093 * 180.02562 * 11 9 8 14 14 N 1.31512 * 120.00006 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 120.00144 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46954 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47370 * 119.99713 * 15 13 11 18 18 H 1.48500 * 109.46857 * 239.99909 * 15 13 11 19 19 C 1.53002 * 109.47238 * 240.00008 * 9 8 6 20 20 C 1.52998 * 117.49653 * 128.62316 * 19 9 8 21 21 C 1.52994 * 117.49788 * 60.00048 * 19 9 8 22 22 C 1.38230 * 119.96055 * 180.02562 * 2 1 3 23 23 H 1.08991 * 109.47339 * 89.99552 * 1 2 3 24 24 H 1.09004 * 109.47273 * 210.00000 * 1 2 3 25 25 H 1.09003 * 109.47417 * 329.99480 * 1 2 3 26 26 H 1.08003 * 120.02458 * 0.05182 * 3 2 1 27 27 H 0.96708 * 114.00086 * 270.02097 * 5 4 3 28 28 H 0.96995 * 120.00614 * 179.97438 * 14 13 11 29 29 H 1.09002 * 115.54790 * 274.32821 * 19 9 8 30 30 H 1.08997 * 117.50022 * 359.97438 * 20 19 9 31 31 H 1.09004 * 117.49969 * 145.02110 * 20 19 9 32 32 H 1.08999 * 117.49802 * 214.98088 * 21 19 9 33 33 H 1.09005 * 117.49824 * 359.97438 * 21 19 9 34 34 H 1.07994 * 119.94328 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1973 0.0000 4 6 3.5838 1.1972 -0.0005 5 8 4.2647 2.3735 -0.0011 6 6 4.2755 -0.0068 -0.0016 7 17 6.0115 -0.0118 -0.0030 8 6 3.5803 -1.2014 -0.0027 9 6 4.3296 -2.5088 -0.0101 10 1 5.4020 -2.3130 -0.0135 11 6 3.9683 -3.3020 1.2192 12 1 3.2658 -2.8997 1.9342 13 6 4.5344 -4.5412 1.4312 14 7 5.3893 -5.0312 0.5604 15 14 4.0859 -5.5247 2.9547 16 1 3.1097 -4.7576 3.7694 17 1 3.4830 -6.8195 2.5484 18 1 5.3090 -5.7785 3.7578 19 6 3.9523 -3.3058 -1.2605 20 6 5.0932 -3.8389 -2.1294 21 6 4.2417 -2.6662 -2.6199 22 6 2.1973 -1.1976 -0.0005 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5139 26 1 1.6569 2.1325 0.0008 27 1 4.4612 2.7139 -0.8847 28 1 5.7879 -5.9028 0.7096 29 1 3.0560 -3.9200 -1.1737 30 1 6.1126 -3.6214 -1.8105 31 1 4.9478 -4.8041 -2.6145 32 1 3.5359 -2.8599 -3.4276 33 1 4.7004 -1.6774 -2.6235 34 1 1.6558 -2.1319 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260478545.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:55 Heat of formation + Delta-G solvation = -29.437044 kcal Electronic energy + Delta-G solvation = -18204.892529 eV Core-core repulsion = 15321.381249 eV Total energy + Delta-G solvation = -2883.511279 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.90958 -38.68023 -37.44650 -37.23152 -34.69935 -33.48851 -31.46507 -28.90613 -27.63177 -25.47463 -23.33331 -22.92339 -21.99984 -20.67795 -18.84308 -18.35139 -17.46545 -16.99931 -16.55730 -16.03122 -15.82950 -14.86674 -14.58741 -14.42820 -14.28721 -13.94924 -13.43787 -13.38216 -12.99697 -12.87301 -12.78043 -12.41984 -12.18918 -12.10963 -11.94974 -11.85881 -11.61139 -11.60119 -11.24361 -10.62528 -10.50674 -10.15208 -9.39908 -9.25650 -8.02397 -6.14376 0.25411 0.44748 1.38980 1.39915 1.43865 1.53075 2.45123 2.71043 3.22041 3.24315 3.39754 3.99866 4.07457 4.25594 4.41298 4.45578 4.49902 4.57882 4.71833 4.88580 4.91351 4.91961 5.12286 5.15405 5.22684 5.32460 5.36209 5.44985 5.51462 5.64563 5.71447 5.82834 5.96540 6.09475 6.37178 6.81484 6.92220 7.50798 9.01761 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.017035 B = 0.007886 C = 0.007159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.301527 B = 3549.575965 C = 3910.261648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.066 4.066 3 C -0.154 4.154 4 C 0.114 3.886 5 O -0.495 6.495 6 C -0.099 4.099 7 Cl -0.077 7.077 8 C -0.024 4.024 9 C 0.100 3.900 10 H 0.028 0.972 11 C -0.526 4.526 12 H 0.047 0.953 13 C 0.026 3.974 14 N -0.893 5.893 15 Si 0.942 3.058 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.286 1.286 19 C -0.094 4.094 20 C -0.141 4.141 21 C -0.191 4.191 22 C -0.122 4.122 23 H 0.087 0.913 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.160 0.840 27 H 0.406 0.594 28 H 0.258 0.742 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.291 10.816 -5.061 13.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.066 4.066 3 C -0.172 4.172 4 C 0.069 3.931 5 O -0.308 6.308 6 C -0.126 4.126 7 Cl -0.048 7.048 8 C -0.025 4.025 9 C 0.081 3.919 10 H 0.046 0.954 11 C -0.564 4.564 12 H 0.065 0.935 13 C -0.175 4.175 14 N -0.531 5.531 15 Si 0.769 3.231 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.213 1.213 19 C -0.113 4.113 20 C -0.178 4.178 21 C -0.228 4.228 22 C -0.140 4.140 23 H 0.106 0.894 24 H 0.087 0.913 25 H 0.104 0.896 26 H 0.178 0.822 27 H 0.265 0.735 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.047 10.613 -4.496 13.509 hybrid contribution 0.648 -1.002 0.434 1.270 sum -6.398 9.611 -4.062 12.240 Atomic orbital electron populations 1.20835 0.88206 1.03786 1.03624 1.20203 0.98043 0.91628 0.96710 1.21303 0.91559 0.99420 1.04914 1.18203 0.90342 0.83597 1.00991 1.84776 1.76241 1.34753 1.35004 1.21506 0.84446 0.94972 1.11641 1.98303 1.10765 1.98624 1.97155 1.20202 0.94644 0.94417 0.93263 1.17488 0.94683 0.87175 0.92507 0.95366 1.21239 1.26305 1.02396 1.06434 0.93516 1.25546 0.95047 0.98406 0.98457 1.70136 1.29156 1.18021 1.35741 0.85755 0.77870 0.78862 0.80639 1.19616 1.20563 1.21261 1.21951 0.98251 1.00924 0.90169 1.22322 0.95859 0.96152 1.03507 1.23020 1.04247 0.96851 0.98676 1.20958 0.92568 0.98524 1.01937 0.89402 0.91309 0.89627 0.82222 0.73546 0.93323 0.91300 0.91737 0.90592 0.88412 0.90448 0.85902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.18 10.01 71.24 0.71 -1.47 16 2 C -0.07 -1.89 5.88 -19.88 -0.12 -2.01 16 3 C -0.15 -4.22 9.64 22.36 0.22 -4.00 16 4 C 0.11 3.66 6.70 22.52 0.15 3.82 16 5 O -0.50 -13.51 12.96 -92.64 -1.20 -14.71 16 6 C -0.10 -3.84 6.33 22.41 0.14 -3.70 16 7 Cl -0.08 -3.05 26.55 -2.72 -0.07 -3.12 16 8 C -0.02 -1.03 4.39 -19.86 -0.09 -1.12 16 9 C 0.10 4.88 2.00 -12.29 -0.02 4.86 16 10 H 0.03 1.53 5.92 -2.38 -0.01 1.51 16 11 C -0.53 -28.40 8.22 25.60 0.21 -28.19 16 12 H 0.05 2.55 7.60 -2.91 -0.02 2.53 16 13 C 0.03 1.43 5.30 84.66 0.45 1.88 16 14 N -0.89 -49.78 11.44 21.45 0.25 -49.53 16 15 Si 0.94 43.48 29.54 68.60 2.03 45.51 16 16 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 19 C -0.09 -4.30 3.86 -10.80 -0.04 -4.34 16 20 C -0.14 -6.22 9.05 30.59 0.28 -5.94 16 21 C -0.19 -7.34 9.87 30.59 0.30 -7.04 16 22 C -0.12 -4.48 8.47 22.28 0.19 -4.29 16 23 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.07 1.41 8.09 -2.38 -0.02 1.39 16 25 H 0.08 1.37 8.08 -2.39 -0.02 1.35 16 26 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 27 H 0.41 7.06 9.06 -74.05 -0.67 6.39 16 28 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 29 H 0.07 3.30 8.11 -2.39 -0.02 3.28 16 30 H 0.06 3.10 8.05 -2.39 -0.02 3.08 16 31 H 0.08 3.20 8.14 -2.38 -0.02 3.18 16 32 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 33 H 0.08 2.96 8.14 -2.38 -0.02 2.94 16 34 H 0.12 4.64 8.05 -2.91 -0.02 4.62 16 Total: -1.00 -62.02 303.43 3.82 -58.20 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.44 Total: 15.21 kcal Atomic # 6 Polarization: -53.93 SS G_CDS: 2.38 Total: -51.55 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.25 Total: -49.53 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -1.20 Total: -14.71 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 17 Polarization: -3.05 SS G_CDS: -0.07 Total: -3.12 kcal Total: -62.02 3.82 -58.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260478545.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.765 kcal (2) G-P(sol) polarization free energy of solvation -62.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds