Wall clock time and date at job start Mon Mar 30 2020 07:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99710 * 2 1 4 4 C 1.50700 * 109.47150 * 180.02562 * 3 2 1 5 5 C 1.38239 * 120.00478 * 0.03937 * 4 3 2 6 6 C 1.38220 * 120.01173 * 179.97438 * 5 4 3 7 7 C 1.38264 * 120.02872 * 0.02562 * 6 5 4 8 8 C 1.50695 * 119.99252 * 179.97438 * 7 6 5 9 9 C 1.50699 * 115.54792 * 234.67217 * 8 7 6 10 10 H 1.07996 * 120.00273 * 268.77659 * 9 8 7 11 11 C 1.37888 * 119.99554 * 88.78443 * 9 8 7 12 12 N 1.31516 * 119.99400 * 169.99019 * 11 9 8 13 13 Si 1.86794 * 120.00137 * 349.98579 * 11 9 8 14 14 H 1.48502 * 109.46926 * 85.13941 * 13 11 9 15 15 H 1.48501 * 109.47353 * 205.14286 * 13 11 9 16 16 H 1.48503 * 109.47025 * 325.14053 * 13 11 9 17 17 C 1.53003 * 117.49904 * 89.00816 * 8 7 6 18 18 C 1.52999 * 117.50212 * 20.34554 * 8 7 6 19 19 C 1.38189 * 120.00952 * 359.97267 * 7 6 5 20 20 C 1.38331 * 120.01119 * 180.02562 * 4 3 2 21 21 Cl 1.73598 * 120.00948 * 0.29145 * 20 4 3 22 22 H 1.09004 * 109.46977 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46951 * 299.99626 * 1 2 3 24 24 H 1.08997 * 109.47319 * 60.00058 * 1 2 3 25 25 H 1.09001 * 109.46957 * 60.00222 * 3 2 1 26 26 H 1.09002 * 109.47233 * 299.99770 * 3 2 1 27 27 H 1.07997 * 119.99223 * 359.96361 * 5 4 3 28 28 H 1.08002 * 119.98467 * 179.97438 * 6 5 4 29 29 H 0.97001 * 119.99525 * 179.97438 * 12 11 9 30 30 H 1.08999 * 117.50264 * 359.97438 * 17 8 7 31 31 H 1.09006 * 117.49563 * 145.02190 * 17 8 7 32 32 H 1.08995 * 117.49945 * 214.97584 * 18 8 7 33 33 H 1.09003 * 117.49936 * 0.02562 * 18 8 7 34 34 H 1.08004 * 120.00577 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.1072 -0.0614 -0.0019 6 6 5.4851 -0.1706 -0.0030 7 6 6.2694 0.9680 -0.0023 8 6 7.7716 0.8480 -0.0030 9 6 8.4824 1.5790 1.1067 10 1 8.8153 2.5955 0.9572 11 6 8.7080 0.9499 2.3128 12 7 9.4943 1.5068 3.2078 13 14 7.8966 -0.6931 2.6754 14 1 8.7261 -1.7894 2.1139 15 1 7.7712 -0.8698 4.1445 16 1 6.5474 -0.7262 2.0559 17 6 8.4734 0.7695 -1.3603 18 6 8.3743 -0.4762 -0.4762 19 6 5.6760 2.2161 -0.0011 20 6 4.2968 2.3261 -0.0002 21 17 3.5507 3.8936 0.0087 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 3.4950 -0.9511 -0.0019 28 1 5.9492 -1.1458 -0.0036 29 1 9.6527 1.0645 4.0565 30 1 7.8487 0.8042 -2.2527 31 1 9.4496 1.2462 -1.4504 32 1 9.2852 -0.8185 0.0148 33 1 7.6843 -1.2606 -0.7875 34 1 6.2888 3.1055 -0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260485148.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:56 Heat of formation + Delta-G solvation = -20.645427 kcal Electronic energy + Delta-G solvation = -17818.484020 eV Core-core repulsion = 14935.353974 eV Total energy + Delta-G solvation = -2883.130046 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.85849 -38.98714 -37.96895 -37.09951 -34.26975 -32.62522 -31.66783 -28.46268 -27.63998 -26.37156 -24.09041 -23.02240 -22.67015 -20.89048 -18.76225 -17.68307 -17.42115 -16.88089 -16.77109 -16.22909 -15.90821 -15.67400 -14.98215 -14.78368 -14.65083 -14.44093 -13.90622 -13.33651 -13.13488 -13.00551 -12.79331 -12.56961 -12.39594 -12.17376 -12.01649 -11.93074 -11.76712 -11.49752 -11.14852 -10.74599 -10.69195 -10.43548 -9.67019 -9.24716 -8.31419 -6.37661 0.22879 0.41172 1.12591 1.36281 1.42483 1.54372 2.38835 2.67666 2.72805 3.04377 3.24464 3.74162 4.01401 4.02912 4.20723 4.36218 4.39746 4.40065 4.40951 4.56964 4.61663 4.63834 4.75887 4.85948 4.89089 4.97479 5.06402 5.15033 5.35712 5.46255 5.48287 5.66437 5.77405 5.96722 6.20419 6.28949 6.69372 7.32055 8.83192 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.020344 B = 0.006612 C = 0.006068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.988592 B = 4233.659887 C = 4613.280753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.114 3.886 4 C -0.106 4.106 5 C -0.087 4.087 6 C -0.126 4.126 7 C -0.021 4.021 8 C 0.003 3.997 9 C -0.484 4.484 10 H 0.034 0.966 11 C 0.028 3.972 12 N -0.945 5.945 13 Si 0.921 3.079 14 H -0.260 1.260 15 H -0.305 1.305 16 H -0.220 1.220 17 C -0.156 4.156 18 C -0.187 4.187 19 C -0.106 4.106 20 C -0.034 4.034 21 Cl -0.068 7.068 22 H 0.101 0.899 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.152 0.848 28 H 0.134 0.866 29 H 0.265 0.735 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.539 -3.759 -8.546 19.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C 0.038 3.962 4 C -0.107 4.107 5 C -0.105 4.105 6 C -0.144 4.144 7 C -0.022 4.022 8 C 0.002 3.998 9 C -0.521 4.521 10 H 0.052 0.948 11 C -0.170 4.170 12 N -0.584 5.584 13 Si 0.745 3.255 14 H -0.185 1.185 15 H -0.233 1.233 16 H -0.143 1.143 17 C -0.193 4.193 18 C -0.224 4.224 19 C -0.125 4.125 20 C -0.061 4.061 21 Cl -0.039 7.039 22 H 0.119 0.881 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.169 0.831 28 H 0.151 0.849 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.125 0.875 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.428 -3.788 -8.383 19.706 hybrid contribution 0.238 0.213 0.827 0.886 sum -17.190 -3.575 -7.556 19.114 Atomic orbital electron populations 1.22968 0.78924 1.04141 1.01056 1.87806 1.21801 1.27289 1.95669 1.21139 0.88093 0.85195 1.01753 1.19588 0.95473 0.91912 1.03725 1.21011 0.93790 0.97409 0.98333 1.21364 0.93873 0.98669 1.00525 1.19655 0.94986 0.92452 0.95077 1.18053 0.87918 0.98595 0.95241 1.20296 1.35372 0.99501 0.96909 0.94754 1.25760 0.94163 1.01456 0.95615 1.70056 1.37453 1.42171 1.08675 0.86170 0.82756 0.80315 0.76292 1.18469 1.23278 1.14260 1.22900 1.01636 1.01224 0.93500 1.23081 1.02815 0.91642 1.04817 1.20741 0.92197 0.98460 1.01058 1.20581 0.92460 0.85945 1.07086 1.98320 1.82174 1.26446 1.96976 0.88087 0.93184 0.92788 0.91219 0.90526 0.83080 0.84856 0.92599 0.88019 0.89978 0.90558 0.87510 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 11.01 113.37 1.25 1.62 16 2 O -0.41 -9.41 9.18 -148.98 -1.37 -10.78 16 3 C 0.11 2.74 5.30 71.24 0.38 3.12 16 4 C -0.11 -3.25 5.88 -19.84 -0.12 -3.37 16 5 C -0.09 -2.74 9.38 22.27 0.21 -2.53 16 6 C -0.13 -4.45 7.36 22.27 0.16 -4.29 16 7 C -0.02 -0.85 4.65 -19.87 -0.09 -0.94 16 8 C 0.00 0.12 1.11 -53.67 -0.06 0.06 16 9 C -0.48 -26.99 9.12 25.60 0.23 -26.76 16 10 H 0.03 2.15 8.06 -2.91 -0.02 2.13 16 11 C 0.03 1.63 5.45 84.66 0.46 2.09 16 12 N -0.94 -58.84 13.96 21.45 0.30 -58.54 16 13 Si 0.92 43.36 25.44 68.60 1.75 45.11 16 14 H -0.26 -11.53 7.09 99.48 0.70 -10.83 16 15 H -0.31 -14.82 7.11 99.48 0.71 -14.11 16 16 H -0.22 -9.42 4.61 99.48 0.46 -8.96 16 17 C -0.16 -5.96 9.94 30.62 0.30 -5.65 16 18 C -0.19 -7.27 7.36 30.62 0.23 -7.05 16 19 C -0.11 -4.17 9.24 22.29 0.21 -3.96 16 20 C -0.03 -1.15 6.31 22.32 0.14 -1.01 16 21 Cl -0.07 -1.96 27.99 -2.72 -0.08 -2.03 16 22 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 23 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.15 4.14 7.01 -2.91 -0.02 4.12 16 28 H 0.13 4.31 6.23 -2.91 -0.02 4.30 16 29 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 30 H 0.10 3.33 8.14 -2.39 -0.02 3.32 16 31 H 0.08 3.25 8.14 -2.38 -0.02 3.23 16 32 H 0.08 3.20 7.56 -2.39 -0.02 3.18 16 33 H 0.11 3.49 6.58 -2.39 -0.02 3.48 16 34 H 0.12 4.95 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -64.44 296.29 4.75 -59.69 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.84 Total: 15.22 kcal Atomic # 6 Polarization: -51.97 SS G_CDS: 3.30 Total: -48.66 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: 0.30 Total: -58.54 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -1.37 Total: -10.78 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.75 Total: 45.11 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.08 Total: -2.03 kcal Total: -64.44 4.75 -59.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260485148.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.048 kcal (2) G-P(sol) polarization free energy of solvation -64.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds