Wall clock time and date at job start Mon Mar 30 2020 07:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35919 * 116.99861 * 2 1 4 4 C 1.38709 * 120.05967 * 269.97290 * 3 2 1 5 5 C 1.50695 * 120.01863 * 0.02562 * 4 3 2 6 6 C 1.38156 * 119.95729 * 180.02562 * 4 3 2 7 7 C 1.38272 * 120.07200 * 359.73273 * 6 4 3 8 8 C 1.38246 * 120.12547 * 0.54334 * 7 6 4 9 9 C 1.50703 * 119.98157 * 179.72783 * 8 7 6 10 10 C 1.50693 * 115.55003 * 114.30829 * 9 8 7 11 11 H 1.08001 * 120.00004 * 118.64179 * 10 9 8 12 12 C 1.37883 * 119.99802 * 298.63611 * 10 9 8 13 13 N 1.31512 * 120.00019 * 353.31902 * 12 10 9 14 14 Si 1.86801 * 119.99657 * 173.31351 * 12 10 9 15 15 H 1.48502 * 109.46956 * 90.00420 * 14 12 10 16 16 H 1.48497 * 109.46730 * 209.99902 * 14 12 10 17 17 H 1.48491 * 109.47345 * 330.00068 * 14 12 10 18 18 C 1.52997 * 117.49486 * 259.97604 * 9 8 7 19 19 C 1.53005 * 117.49500 * 328.63269 * 9 8 7 20 20 C 1.38252 * 120.03802 * 359.45847 * 8 7 6 21 21 Cl 1.73609 * 120.03893 * 180.24970 * 20 8 7 22 22 H 1.09004 * 109.46841 * 300.00095 * 1 2 3 23 23 H 1.08999 * 109.47441 * 59.99778 * 1 2 3 24 24 H 1.09006 * 109.47397 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47350 * 89.99753 * 5 4 3 26 26 H 1.09005 * 109.47346 * 209.99240 * 5 4 3 27 27 H 1.08998 * 109.47706 * 329.99196 * 5 4 3 28 28 H 1.07993 * 119.95827 * 180.02562 * 6 4 3 29 29 H 1.08011 * 119.93756 * 180.27497 * 7 6 4 30 30 H 0.96996 * 120.00013 * 175.03756 * 13 12 10 31 31 H 1.09004 * 117.49820 * 214.99910 * 18 9 8 32 32 H 1.09004 * 117.50622 * 0.02684 * 18 9 8 33 33 H 1.08998 * 117.49914 * 359.97438 * 19 9 8 34 34 H 1.09003 * 117.49081 * 144.99964 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 2.3620 1.8299 -1.2005 5 6 2.0208 1.1601 -2.5066 6 6 2.9896 3.0606 -1.1981 7 6 3.2982 3.6786 -0.0002 8 6 2.9899 3.0622 1.1982 9 6 3.3333 3.7359 2.5018 10 6 2.1576 4.1524 3.3475 11 1 2.0275 3.7342 4.3347 12 6 1.2481 5.0674 2.8610 13 7 1.4746 5.6750 1.7168 14 14 -0.3057 5.4440 3.8270 15 1 -0.0476 6.5698 4.7604 16 1 -1.3935 5.8188 2.8883 17 1 -0.7111 4.2429 4.6003 18 6 4.5953 3.2668 3.2284 19 6 4.5755 4.6287 2.5298 20 6 2.3619 1.8306 1.2014 21 17 1.9689 1.0594 2.7064 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.0230 1.4654 -2.8218 26 1 2.7467 1.4524 -3.2654 27 1 2.0458 0.0781 -2.3776 28 1 3.2352 3.5426 -2.1327 29 1 3.7849 4.6429 -0.0009 30 1 0.8027 6.2638 1.3391 31 1 4.5753 3.2596 4.3182 32 1 5.1776 2.4713 2.7634 33 1 5.1445 4.7285 1.6056 34 1 4.5422 5.5175 3.1601 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260496616.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:08 Heat of formation + Delta-G solvation = -0.469555 kcal Electronic energy + Delta-G solvation = -18517.953048 eV Core-core repulsion = 15635.697894 eV Total energy + Delta-G solvation = -2882.255155 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -39.57059 -37.45183 -35.62488 -35.41253 -32.04087 -31.54756 -29.50003 -27.12229 -25.97288 -25.37695 -22.07046 -21.53419 -20.79222 -19.34504 -17.15189 -16.08650 -15.61459 -15.24687 -15.14350 -14.58584 -14.03061 -13.52732 -13.38901 -13.15609 -12.90138 -12.16740 -12.00319 -11.90653 -11.60776 -11.32964 -11.05104 -10.93801 -10.81179 -10.52351 -10.29674 -10.27477 -9.98473 -9.75884 -9.29826 -9.23477 -8.64661 -8.20722 -7.81744 -7.54249 -6.06576 -4.09585 1.82832 1.99942 3.13243 3.27356 3.34906 3.39850 3.98686 4.39196 4.54370 5.07807 5.28526 5.46192 5.47306 5.55078 5.63522 5.77215 5.85269 5.86662 5.92343 6.03859 6.16192 6.23090 6.31873 6.50892 6.64222 6.68919 6.75274 6.98823 7.02708 7.21002 7.32577 7.44384 7.56784 7.85719 7.98320 8.34832 8.88300 9.52816 11.00868 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.017685 B = 0.008998 C = 0.008390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.864169 B = 3110.979944 C = 3336.599455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.330 6.330 3 C 0.081 3.919 4 C -0.122 4.122 5 C -0.101 4.101 6 C -0.118 4.118 7 C -0.081 4.081 8 C 0.024 3.976 9 C 0.079 3.921 10 C -0.476 4.476 11 H 0.064 0.936 12 C 0.073 3.927 13 N -0.872 5.872 14 Si 0.883 3.117 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.272 1.272 18 C -0.192 4.192 19 C -0.178 4.178 20 C -0.037 4.037 21 Cl -0.061 7.061 22 H 0.048 0.952 23 H 0.041 0.959 24 H 0.087 0.913 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.118 0.882 29 H 0.129 0.871 30 H 0.260 0.740 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.537 -6.922 -5.849 9.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.247 6.247 3 C 0.037 3.963 4 C -0.123 4.123 5 C -0.157 4.157 6 C -0.136 4.136 7 C -0.099 4.099 8 C 0.023 3.977 9 C 0.079 3.921 10 C -0.514 4.514 11 H 0.082 0.918 12 C -0.130 4.130 13 N -0.508 5.508 14 Si 0.710 3.290 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.229 4.229 19 C -0.216 4.216 20 C -0.064 4.064 21 Cl -0.032 7.032 22 H 0.066 0.934 23 H 0.060 0.940 24 H 0.105 0.895 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.136 0.864 29 H 0.147 0.853 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.518 -6.984 -5.812 9.101 hybrid contribution -1.245 0.532 0.531 1.454 sum -0.727 -6.452 -5.280 8.369 Atomic orbital electron populations 1.22911 0.79862 1.02308 1.00757 1.85965 1.19321 1.25074 1.94318 1.18105 1.00347 0.87179 0.90699 1.19794 1.02946 0.95623 0.93940 1.20562 1.00970 1.00563 0.93638 1.20878 1.00184 0.94321 0.98204 1.20979 0.99163 0.99127 0.90662 1.19421 0.92631 0.89591 0.96103 1.17575 0.88300 0.96115 0.90122 1.20313 1.07513 1.22781 1.00754 0.91808 1.24918 0.97901 0.94818 0.95395 1.69987 1.33540 1.28536 1.18704 0.86735 0.83425 0.78752 0.80081 1.20626 1.21218 1.19683 1.22885 1.03938 0.97450 0.98628 1.22881 1.04798 0.93454 1.00481 1.21056 1.04279 0.94957 0.86094 1.98303 1.92614 1.80289 1.31993 0.93357 0.94048 0.89452 0.92153 0.91961 0.91462 0.86370 0.85333 0.93044 0.90100 0.91399 0.91556 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 11.13 101.05 1.12 1.66 16 2 O -0.33 -5.95 8.92 -19.49 -0.17 -6.12 16 3 C 0.08 1.60 5.69 -39.19 -0.22 1.38 16 4 C -0.12 -2.20 5.89 -104.48 -0.62 -2.81 16 5 C -0.10 -1.40 9.79 36.00 0.35 -1.05 16 6 C -0.12 -2.15 9.70 -39.60 -0.38 -2.53 16 7 C -0.08 -1.71 9.01 -39.57 -0.36 -2.06 16 8 C 0.02 0.55 4.55 -104.61 -0.48 0.07 16 9 C 0.08 1.89 0.84 -156.81 -0.13 1.76 16 10 C -0.48 -12.49 7.77 -34.44 -0.27 -12.76 16 11 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 12 C 0.07 1.95 5.36 -17.82 -0.10 1.86 16 13 N -0.87 -23.61 12.68 55.43 0.70 -22.91 16 14 Si 0.88 20.93 29.55 -169.99 -5.02 15.90 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 C -0.19 -4.11 9.94 -26.69 -0.27 -4.37 16 19 C -0.18 -3.96 9.43 -26.69 -0.25 -4.21 16 20 C -0.04 -0.81 6.29 -39.36 -0.25 -1.05 16 21 Cl -0.06 -1.30 26.69 -51.86 -1.38 -2.68 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 27 H 0.07 0.91 7.53 -51.93 -0.39 0.52 16 28 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 29 H 0.13 2.72 7.03 -52.48 -0.37 2.35 16 30 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 31 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 33 H 0.07 1.37 7.14 -51.93 -0.37 1.00 16 34 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 LS Contribution 305.52 15.07 4.60 4.60 Total: -1.00 -27.87 305.52 -7.59 -35.46 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.48 Total: -0.13 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: -1.84 Total: -24.13 kcal Atomic # 7 Polarization: -23.61 SS G_CDS: 0.70 Total: -22.91 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.17 Total: -6.12 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -1.38 Total: -2.68 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.87 -7.59 -35.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260496616.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.994 kcal (2) G-P(sol) polarization free energy of solvation -27.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds