Wall clock time and date at job start Mon Mar 30 2020 07:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35919 * 116.99861 * 2 1 4 4 C 1.38709 * 120.05967 * 269.97290 * 3 2 1 5 5 C 1.50695 * 120.01863 * 0.02562 * 4 3 2 6 6 C 1.38156 * 119.95729 * 180.02562 * 4 3 2 7 7 C 1.38272 * 120.07200 * 359.73273 * 6 4 3 8 8 C 1.38246 * 120.12547 * 0.54334 * 7 6 4 9 9 C 1.50703 * 119.98157 * 179.72783 * 8 7 6 10 10 C 1.50693 * 115.55003 * 114.30829 * 9 8 7 11 11 H 1.08001 * 120.00004 * 118.64179 * 10 9 8 12 12 C 1.37883 * 119.99802 * 298.63611 * 10 9 8 13 13 N 1.31512 * 120.00019 * 353.31902 * 12 10 9 14 14 Si 1.86801 * 119.99657 * 173.31351 * 12 10 9 15 15 H 1.48502 * 109.46956 * 90.00420 * 14 12 10 16 16 H 1.48497 * 109.46730 * 209.99902 * 14 12 10 17 17 H 1.48491 * 109.47345 * 330.00068 * 14 12 10 18 18 C 1.52997 * 117.49486 * 259.97604 * 9 8 7 19 19 C 1.53005 * 117.49500 * 328.63269 * 9 8 7 20 20 C 1.38252 * 120.03802 * 359.45847 * 8 7 6 21 21 Cl 1.73609 * 120.03893 * 180.24970 * 20 8 7 22 22 H 1.09004 * 109.46841 * 300.00095 * 1 2 3 23 23 H 1.08999 * 109.47441 * 59.99778 * 1 2 3 24 24 H 1.09006 * 109.47397 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47350 * 89.99753 * 5 4 3 26 26 H 1.09005 * 109.47346 * 209.99240 * 5 4 3 27 27 H 1.08998 * 109.47706 * 329.99196 * 5 4 3 28 28 H 1.07993 * 119.95827 * 180.02562 * 6 4 3 29 29 H 1.08011 * 119.93756 * 180.27497 * 7 6 4 30 30 H 0.96996 * 120.00013 * 175.03756 * 13 12 10 31 31 H 1.09004 * 117.49820 * 214.99910 * 18 9 8 32 32 H 1.09004 * 117.50622 * 0.02684 * 18 9 8 33 33 H 1.08998 * 117.49914 * 359.97438 * 19 9 8 34 34 H 1.09003 * 117.49081 * 144.99964 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 2.3620 1.8299 -1.2005 5 6 2.0208 1.1601 -2.5066 6 6 2.9896 3.0606 -1.1981 7 6 3.2982 3.6786 -0.0002 8 6 2.9899 3.0622 1.1982 9 6 3.3333 3.7359 2.5018 10 6 2.1576 4.1524 3.3475 11 1 2.0275 3.7342 4.3347 12 6 1.2481 5.0674 2.8610 13 7 1.4746 5.6750 1.7168 14 14 -0.3057 5.4440 3.8270 15 1 -0.0476 6.5698 4.7604 16 1 -1.3935 5.8188 2.8883 17 1 -0.7111 4.2429 4.6003 18 6 4.5953 3.2668 3.2284 19 6 4.5755 4.6287 2.5298 20 6 2.3619 1.8306 1.2014 21 17 1.9689 1.0594 2.7064 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.0230 1.4654 -2.8218 26 1 2.7467 1.4524 -3.2654 27 1 2.0458 0.0781 -2.3776 28 1 3.2352 3.5426 -2.1327 29 1 3.7849 4.6429 -0.0009 30 1 0.8027 6.2638 1.3391 31 1 4.5753 3.2596 4.3182 32 1 5.1776 2.4713 2.7634 33 1 5.1445 4.7285 1.6056 34 1 4.5422 5.5175 3.1601 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260496616.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:07 Heat of formation + Delta-G solvation = -13.619838 kcal Electronic energy + Delta-G solvation = -18518.523287 eV Core-core repulsion = 15635.697894 eV Total energy + Delta-G solvation = -2882.825394 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.03993 -39.00905 -37.17634 -37.04026 -34.02682 -32.95476 -30.96793 -28.47611 -27.56662 -27.00894 -23.64341 -23.08174 -22.46043 -21.02623 -18.86157 -17.65751 -17.13722 -16.77285 -16.57207 -16.47169 -15.69618 -15.04349 -14.82433 -14.58119 -14.25028 -13.72165 -13.50289 -13.36148 -12.96740 -12.89257 -12.84640 -12.71835 -12.41019 -12.20238 -12.01739 -11.86466 -11.52852 -11.47991 -11.08091 -10.81578 -10.47883 -10.07654 -9.34583 -9.11310 -8.05928 -6.12881 0.31442 0.49453 1.37367 1.41099 1.49414 1.53858 2.43724 2.55546 3.07869 3.15383 3.58740 3.94508 4.17029 4.30246 4.37548 4.48142 4.50969 4.55667 4.58745 4.73235 4.75772 4.82044 4.89902 4.96789 4.98240 5.11918 5.23875 5.35503 5.56406 5.58188 5.64503 5.75849 5.87933 5.98311 6.42233 6.57570 6.85869 7.49989 8.99407 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.017685 B = 0.008998 C = 0.008390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.864169 B = 3110.979944 C = 3336.599455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.336 6.336 3 C 0.076 3.924 4 C -0.119 4.119 5 C -0.097 4.097 6 C -0.111 4.111 7 C -0.097 4.097 8 C 0.000 4.000 9 C 0.060 3.940 10 C -0.484 4.484 11 H 0.049 0.951 12 C 0.036 3.964 13 N -0.890 5.890 14 Si 0.928 3.072 15 H -0.277 1.277 16 H -0.284 1.284 17 H -0.275 1.275 18 C -0.178 4.178 19 C -0.176 4.176 20 C -0.062 4.062 21 Cl -0.069 7.069 22 H 0.029 0.971 23 H 0.054 0.946 24 H 0.121 0.879 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.153 0.847 29 H 0.120 0.880 30 H 0.258 0.742 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.165 -7.790 -7.623 10.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.253 6.253 3 C 0.032 3.968 4 C -0.120 4.120 5 C -0.153 4.153 6 C -0.129 4.129 7 C -0.116 4.116 8 C -0.001 4.001 9 C 0.060 3.940 10 C -0.521 4.521 11 H 0.067 0.933 12 C -0.166 4.166 13 N -0.527 5.527 14 Si 0.755 3.245 15 H -0.203 1.203 16 H -0.210 1.210 17 H -0.200 1.200 18 C -0.215 4.215 19 C -0.213 4.213 20 C -0.089 4.089 21 Cl -0.040 7.040 22 H 0.048 0.952 23 H 0.073 0.927 24 H 0.139 0.861 25 H 0.093 0.907 26 H 0.105 0.895 27 H 0.090 0.910 28 H 0.170 0.830 29 H 0.138 0.862 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.147 -7.857 -7.578 10.917 hybrid contribution -1.129 0.737 1.056 1.712 sum -0.982 -7.120 -6.522 9.706 Atomic orbital electron populations 1.23135 0.78086 1.04499 1.00483 1.85941 1.20922 1.24180 1.94295 1.18323 1.00255 0.87581 0.90653 1.20271 1.01303 0.95316 0.95094 1.20640 1.02431 1.00437 0.91818 1.21228 0.98821 0.94326 0.98498 1.21020 1.00111 0.99076 0.91372 1.19391 0.94311 0.90394 0.96051 1.17597 0.88049 0.97321 0.91076 1.20442 1.08585 1.22554 1.00558 0.93297 1.25421 0.99922 0.95004 0.96209 1.70066 1.33958 1.29079 1.19560 0.86021 0.81040 0.78355 0.79099 1.20301 1.21009 1.19960 1.22868 1.02864 0.97259 0.98546 1.22812 1.04411 0.93183 1.00921 1.21301 1.05463 0.95415 0.86683 1.98283 1.92749 1.80320 1.32672 0.95218 0.92709 0.86105 0.90720 0.89509 0.91029 0.82961 0.86196 0.93309 0.90131 0.90123 0.90194 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.13 113.37 1.26 2.14 16 2 O -0.34 -11.47 8.92 -92.64 -0.83 -12.30 16 3 C 0.08 2.91 5.69 22.52 0.13 3.03 16 4 C -0.12 -3.95 5.89 -19.77 -0.12 -4.07 16 5 C -0.10 -2.29 9.79 71.23 0.70 -1.60 16 6 C -0.11 -3.78 9.70 22.26 0.22 -3.57 16 7 C -0.10 -4.04 9.01 22.28 0.20 -3.84 16 8 C 0.00 -0.01 4.55 -19.86 -0.09 -0.10 16 9 C 0.06 2.88 0.84 -53.67 -0.05 2.84 16 10 C -0.48 -25.76 7.77 25.60 0.20 -25.56 16 11 H 0.05 2.67 7.82 -2.91 -0.02 2.65 16 12 C 0.04 1.92 5.36 84.66 0.45 2.37 16 13 N -0.89 -48.50 12.68 21.45 0.27 -48.22 16 14 Si 0.93 43.22 29.55 68.60 2.03 45.25 16 15 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 16 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 17 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 18 C -0.18 -7.64 9.94 30.62 0.30 -7.34 16 19 C -0.18 -7.84 9.43 30.62 0.29 -7.55 16 20 C -0.06 -2.69 6.29 22.41 0.14 -2.55 16 21 Cl -0.07 -2.96 26.69 -2.72 -0.07 -3.03 16 22 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.12 2.46 8.14 -2.38 -0.02 2.44 16 25 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.09 1.66 8.09 -2.38 -0.02 1.64 16 27 H 0.07 1.66 7.53 -2.39 -0.02 1.64 16 28 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 29 H 0.12 5.06 7.03 -2.90 -0.02 5.04 16 30 H 0.26 13.62 8.32 -92.71 -0.77 12.85 16 31 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 32 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 33 H 0.08 3.29 7.14 -2.39 -0.02 3.27 16 34 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -59.44 305.52 6.13 -53.31 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 1.09 Total: 10.78 kcal Atomic # 6 Polarization: -49.42 SS G_CDS: 3.64 Total: -45.78 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.27 Total: -48.22 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -0.83 Total: -12.30 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 17 Polarization: -2.96 SS G_CDS: -0.07 Total: -3.03 kcal Total: -59.44 6.13 -53.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260496616.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.689 kcal (2) G-P(sol) polarization free energy of solvation -59.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds