Wall clock time and date at job start Mon Mar 30 2020 07:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76196 * 102.99912 * 2 1 4 4 C 1.39180 * 120.08238 * 276.00415 * 3 2 1 5 5 F 1.35099 * 120.06426 * 0.02562 * 4 3 2 6 6 C 1.38222 * 119.88288 * 180.31949 * 4 3 2 7 7 C 1.38355 * 120.05190 * 359.69820 * 6 4 3 8 8 C 1.38243 * 120.17083 * 0.02562 * 7 6 4 9 9 C 1.38172 * 120.11848 * 0.02562 * 8 7 6 10 10 C 1.50708 * 120.02853 * 179.97438 * 9 8 7 11 11 H 1.08995 * 109.47161 * 174.60178 * 10 9 8 12 12 C 1.50704 * 109.46882 * 294.59902 * 10 9 8 13 13 H 1.08001 * 119.99682 * 0.02562 * 12 10 9 14 14 C 1.37875 * 119.99656 * 179.97438 * 12 10 9 15 15 N 1.31507 * 120.00421 * 359.73223 * 14 12 10 16 16 Si 1.86799 * 119.99583 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47361 * 269.72628 * 16 14 12 18 18 H 1.48499 * 109.47473 * 29.73221 * 16 14 12 19 19 H 1.48499 * 109.46966 * 149.72919 * 16 14 12 20 20 C 1.52997 * 109.46953 * 54.59922 * 10 9 8 21 21 C 1.53003 * 117.49732 * 122.31478 * 20 10 9 22 22 C 1.53000 * 117.50201 * 53.65095 * 20 10 9 23 23 H 1.09004 * 109.46699 * 174.77400 * 1 2 3 24 24 H 1.08993 * 109.47195 * 294.77371 * 1 2 3 25 25 H 1.08993 * 109.47191 * 54.77879 * 1 2 3 26 26 H 1.08000 * 119.97590 * 179.72268 * 6 4 3 27 27 H 1.07995 * 119.91544 * 179.97438 * 7 6 4 28 28 H 1.08004 * 119.94304 * 179.97438 * 8 7 6 29 29 H 0.97004 * 120.00012 * 0.27033 * 15 14 12 30 30 H 1.09009 * 115.54922 * 267.97926 * 20 10 9 31 31 H 1.08996 * 117.50099 * 359.97438 * 21 20 10 32 32 H 1.08999 * 117.49738 * 145.01839 * 21 20 10 33 33 H 1.08994 * 117.50188 * 214.97847 * 22 20 10 34 34 H 1.09000 * 117.49862 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 2.2445 2.4249 -1.1977 5 9 1.9733 1.7973 -2.3630 6 6 2.5624 3.7701 -1.1936 7 6 2.8400 4.4128 -0.0003 8 6 2.8011 3.7129 1.1912 9 6 2.4852 2.3678 1.1952 10 6 2.4439 1.6066 2.4953 11 1 2.0864 0.5935 2.3119 12 6 3.8279 1.5512 3.0890 13 1 4.6546 2.0205 2.5764 14 6 4.0386 0.9021 4.2871 15 7 3.0309 0.3361 4.9144 16 14 5.7542 0.8328 5.0226 17 1 6.4540 -0.3820 4.5330 18 1 6.5164 2.0408 4.6162 19 1 5.6563 0.7844 6.5036 20 6 1.4988 2.3125 3.4697 21 6 0.3244 1.5044 4.0252 22 6 0.0758 2.6030 2.9885 23 1 -0.3633 -1.0235 -0.0936 24 1 -0.3633 0.4306 0.9330 25 1 -0.3633 0.5926 -0.8395 26 1 2.5937 4.3199 -2.1227 27 1 3.0885 5.4638 0.0003 28 1 3.0188 4.2182 2.1206 29 1 2.1400 0.3717 4.5322 30 1 1.9652 3.0425 4.1314 31 1 0.2247 0.4701 3.6961 32 1 0.0178 1.7030 5.0521 33 1 -0.3941 3.5238 3.3338 34 1 -0.1870 2.2916 1.9775 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260499654.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:52 Heat of formation + Delta-G solvation = -3.691224 kcal Electronic energy + Delta-G solvation = -18355.320944 eV Core-core repulsion = 15487.342583 eV Total energy + Delta-G solvation = -2867.978361 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.084 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -48.61084 -38.97890 -36.70808 -32.90824 -31.35288 -30.21604 -28.54697 -27.00500 -23.45118 -22.56251 -21.98173 -21.46160 -19.34539 -17.40780 -16.90050 -16.27835 -15.95967 -15.34794 -14.76987 -14.68342 -13.82184 -13.67976 -13.59237 -13.40217 -13.12104 -12.78930 -12.47852 -12.29359 -11.80990 -11.46045 -11.23700 -10.89089 -10.83253 -10.52510 -10.18782 -10.09466 -9.92912 -9.64352 -9.21775 -8.72976 -8.36133 -8.34131 -8.04003 -7.09195 -6.29005 -4.06405 1.22610 1.66255 2.16038 3.03068 3.45307 3.47012 3.62633 4.01202 4.48297 4.55839 4.67404 5.07730 5.29826 5.37273 5.39369 5.42353 5.59467 5.63231 5.68846 5.83487 5.91911 5.93472 6.11493 6.23435 6.31930 6.49770 6.54357 6.67564 6.75404 6.80121 6.92626 7.11821 7.28435 7.63842 8.13036 8.44570 8.91370 9.66057 11.09649 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018484 B = 0.007973 C = 0.007451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.432157 B = 3510.953798 C = 3756.915498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.121 6.121 3 C -0.173 4.173 4 C 0.133 3.867 5 F -0.135 7.135 6 C -0.190 4.190 7 C -0.073 4.073 8 C -0.127 4.127 9 C 0.055 3.945 10 C 0.075 3.925 11 H 0.062 0.938 12 C -0.592 4.592 13 H 0.050 0.950 14 C 0.029 3.971 15 N -0.909 5.909 16 Si 1.066 2.934 17 H -0.288 1.288 18 H -0.290 1.290 19 H -0.285 1.285 20 C -0.105 4.105 21 C -0.170 4.170 22 C -0.210 4.210 23 H 0.099 0.901 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.133 0.867 29 H 0.284 0.716 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.742 5.138 -8.100 10.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.111 5.889 3 C -0.285 4.285 4 C 0.110 3.890 5 F -0.114 7.114 6 C -0.210 4.210 7 C -0.091 4.091 8 C -0.147 4.147 9 C 0.053 3.947 10 C 0.057 3.943 11 H 0.080 0.920 12 C -0.629 4.629 13 H 0.068 0.932 14 C -0.178 4.178 15 N -0.545 5.545 16 Si 0.895 3.105 17 H -0.215 1.215 18 H -0.216 1.216 19 H -0.211 1.211 20 C -0.124 4.124 21 C -0.207 4.207 22 C -0.247 4.247 23 H 0.118 0.882 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.147 0.853 27 H 0.146 0.854 28 H 0.151 0.849 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.248 3.583 -6.853 8.387 hybrid contribution -1.686 1.698 -1.560 2.856 sum -4.934 5.280 -8.413 11.090 Atomic orbital electron populations 1.23605 0.96615 1.05903 1.04895 1.85444 1.04725 1.01884 1.96849 1.21687 1.14140 0.98420 0.94267 1.17783 0.99515 0.90858 0.80817 1.91475 1.91117 1.82699 1.46091 1.20866 1.07757 0.92750 0.99643 1.21119 0.96528 0.99706 0.91786 1.21178 1.01018 0.94269 0.98212 1.20593 0.86064 0.93112 0.94947 1.18120 0.96300 0.94502 0.85426 0.91990 1.21745 0.91893 1.40277 1.09023 0.93164 1.25646 1.04925 0.93073 0.94114 1.70681 1.02188 1.40758 1.40869 0.83590 0.74507 0.76226 0.76227 1.21458 1.21579 1.21086 1.22758 0.87595 1.01095 1.00912 1.22803 1.04575 0.96010 0.97303 1.23020 1.03145 0.99979 0.98535 0.88199 0.90332 0.91083 0.85305 0.85448 0.84890 0.90274 0.88802 0.89512 0.89885 0.90307 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 10.72 101.05 1.08 -1.08 16 2 S -0.12 -2.35 19.86 -107.50 -2.13 -4.48 16 3 C -0.17 -3.44 5.70 -39.01 -0.22 -3.67 16 4 C 0.13 2.38 7.28 -39.24 -0.29 2.10 16 5 F -0.14 -2.37 16.76 2.25 0.04 -2.33 16 6 C -0.19 -2.94 10.02 -39.54 -0.40 -3.33 16 7 C -0.07 -1.12 10.04 -39.54 -0.40 -1.51 16 8 C -0.13 -2.34 8.96 -39.60 -0.35 -2.69 16 9 C 0.06 1.15 4.10 -104.42 -0.43 0.73 16 10 C 0.08 1.76 1.74 -92.92 -0.16 1.60 16 11 H 0.06 1.56 5.65 -51.91 -0.29 1.27 16 12 C -0.59 -15.72 8.27 -34.44 -0.28 -16.00 16 13 H 0.05 1.36 7.72 -52.49 -0.41 0.96 16 14 C 0.03 0.78 5.31 -17.82 -0.09 0.69 16 15 N -0.91 -25.85 13.37 55.43 0.74 -25.11 16 16 Si 1.07 24.61 29.90 -169.99 -5.08 19.53 16 17 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 C -0.10 -2.26 3.54 -90.62 -0.32 -2.58 16 21 C -0.17 -3.38 8.27 -26.69 -0.22 -3.60 16 22 C -0.21 -3.81 9.76 -26.69 -0.26 -4.08 16 23 H 0.10 1.29 8.14 -51.92 -0.42 0.87 16 24 H 0.08 1.22 7.17 -51.93 -0.37 0.85 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 27 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 28 H 0.13 2.42 7.92 -52.48 -0.42 2.00 16 29 H 0.28 7.74 4.18 -40.82 -0.17 7.57 16 30 H 0.09 2.16 8.06 -51.92 -0.42 1.74 16 31 H 0.09 1.77 7.81 -51.93 -0.41 1.37 16 32 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.38 6.99 -51.93 -0.36 1.02 16 LS Contribution 299.10 15.07 4.51 4.51 Total: -1.00 -28.65 299.10 -8.45 -37.11 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -4.18 Total: 4.21 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: -2.34 Total: -33.43 kcal Atomic # 7 Polarization: -25.85 SS G_CDS: 0.74 Total: -25.11 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.33 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.08 Total: 19.53 kcal Atomic # 16 Polarization: -2.35 SS G_CDS: -2.13 Total: -4.48 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.65 -8.45 -37.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260499654.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.414 kcal (2) G-P(sol) polarization free energy of solvation -28.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds